Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47533 * 2 1 4 4 C 1.46498 * 120.00058 * 270.00070 * 3 2 1 5 5 C 1.50700 * 109.46902 * 269.99934 * 4 3 2 6 6 H 1.08002 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99728 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00249 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47044 * 59.99269 * 9 7 5 11 11 H 1.48501 * 109.46982 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46563 * 299.99651 * 9 7 5 13 13 C 1.34780 * 119.99771 * 89.99954 * 3 2 1 14 14 O 1.21609 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.47395 * 119.99949 * 359.97438 * 13 3 2 16 16 C 1.37360 * 128.56547 * 90.14016 * 15 13 3 17 17 C 1.50701 * 126.83087 * 359.97438 * 16 15 13 18 18 O 1.33493 * 106.34237 * 180.25775 * 16 15 13 19 19 N 1.20661 * 113.15824 * 359.73602 * 18 16 15 20 20 C 1.30013 * 112.29570 * 0.02562 * 19 18 16 21 21 C 1.50706 * 127.33065 * 179.97438 * 20 19 18 22 22 O 1.42906 * 109.46702 * 90.02568 * 21 20 19 23 23 H 1.09001 * 109.47111 * 59.99539 * 1 2 3 24 24 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47102 * 300.00041 * 1 2 3 26 26 H 1.09002 * 109.47102 * 239.99958 * 2 1 3 27 27 H 1.09008 * 109.46752 * 120.00415 * 2 1 3 28 28 H 1.08996 * 109.46855 * 29.99684 * 4 3 2 29 29 H 1.08996 * 109.46877 * 150.00090 * 4 3 2 30 30 H 0.96994 * 120.00475 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47532 * 180.28960 * 17 16 15 32 32 H 1.08997 * 109.47625 * 300.29359 * 17 16 15 33 33 H 1.09008 * 109.46890 * 60.28908 * 17 16 15 34 34 H 1.09000 * 109.47318 * 210.02147 * 21 20 19 35 35 H 1.09000 * 109.47161 * 330.02777 * 21 20 19 36 36 H 0.96698 * 113.99410 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8348 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6175 9 14 5.9135 2.0961 -3.4170 10 1 6.1402 0.6394 -3.5953 11 1 6.1611 2.7962 -4.7030 12 1 6.8414 2.6184 -2.3818 13 6 2.2431 2.0165 1.1673 14 8 2.6481 3.1631 1.1673 15 6 1.9968 1.3218 2.4437 16 6 2.8669 0.5619 3.1868 17 6 4.3059 0.2567 2.8596 18 8 2.1825 0.1423 4.2534 19 7 1.0415 0.5346 4.2695 20 6 0.7592 1.2731 3.2374 21 6 -0.5573 1.9338 2.9190 22 8 -0.5868 3.2402 3.4975 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0957 3.1409 -1.1383 30 1 3.6756 3.5169 -4.4434 31 1 4.7298 -0.3755 3.6398 32 1 4.3588 -0.2624 1.9027 33 1 4.8702 1.1875 2.7997 34 1 -0.6724 2.0125 1.8380 35 1 -1.3720 1.3366 3.3287 36 1 -1.4068 3.7252 3.3320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349784247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -23.928598 kcal Electronic energy + Delta-G solvation = -21274.237476 eV Core-core repulsion = 17955.237169 eV Total energy + Delta-G solvation = -3319.000307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.78171 -39.02669 -37.05629 -35.34512 -33.80202 -33.30673 -32.72047 -30.20224 -28.21124 -27.62329 -26.83726 -24.39668 -23.09923 -22.15984 -20.20979 -18.89167 -18.01882 -17.28057 -17.06613 -16.49591 -16.07217 -15.60538 -14.94185 -14.53571 -14.29136 -14.14160 -13.52411 -13.29353 -13.17752 -13.02833 -12.64568 -12.29860 -12.10942 -12.03064 -11.71105 -11.30213 -11.15889 -10.97548 -10.79442 -10.62129 -10.21164 -10.14985 -10.09531 -9.72771 -9.37015 -9.03180 -8.47779 -7.78247 -6.09218 -4.14487 1.45684 1.90840 2.95583 3.10240 3.28613 3.33696 3.36207 3.72789 4.02341 4.31250 4.40767 4.67122 4.92173 5.05714 5.09132 5.24750 5.27531 5.30954 5.45839 5.49435 5.58399 5.65038 5.72767 5.83195 5.96331 6.05050 6.15315 6.40568 6.98222 7.36006 7.44413 7.47323 7.86234 8.16318 8.26707 8.27747 8.80510 8.96388 9.50663 10.98990 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.006075 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.998191 B = 4607.905650 C = 5043.988134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.585 5.585 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.584 3.416 14 O -0.521 6.521 15 C -0.213 4.213 16 C 0.001 3.999 17 C -0.076 4.076 18 O 0.099 5.901 19 N -0.344 5.344 20 C 0.044 3.956 21 C 0.156 3.844 22 O -0.560 6.560 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -8.138 10.425 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.316 5.316 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.368 3.632 14 O -0.397 6.397 15 C -0.221 4.221 16 C -0.061 4.061 17 C -0.134 4.134 18 O 0.034 5.966 19 N -0.049 5.049 20 C -0.118 4.118 21 C 0.078 3.922 22 O -0.365 6.365 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.902 -7.983 11.455 15.159 hybrid contribution 0.567 0.313 -1.227 1.387 sum -5.335 -7.670 10.228 13.853 Atomic orbital electron populations 1.22315 0.96860 1.01651 1.02271 1.21392 0.93627 0.84044 1.02544 1.48228 1.62884 1.13322 1.07176 1.19341 0.96552 0.93669 0.77616 1.21367 0.96771 1.32238 1.06430 0.92397 1.24926 0.97886 0.94821 0.96336 1.69909 1.35784 1.33198 1.14354 0.86558 0.84700 0.78268 0.77908 1.20211 1.21149 1.20116 1.16837 0.78978 0.85624 0.81769 1.90812 1.45177 1.17058 1.86612 1.22267 0.93537 1.05415 1.00841 1.24591 0.97119 0.97055 0.87385 1.20459 0.85101 1.04359 1.03432 1.84491 1.16594 1.56700 1.38852 1.73534 0.96359 1.14691 1.20294 1.24240 0.96673 0.99333 0.91524 1.20235 0.90109 0.83945 0.97941 1.86564 1.43767 1.27837 1.78374 0.91767 0.92030 0.93152 0.89567 0.92105 0.94659 0.93731 0.92575 0.89546 0.88466 0.88467 0.90598 0.91452 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.74 5.95 -4.04 -0.02 1.72 16 3 N -0.58 -12.19 2.46 -176.34 -0.43 -12.62 16 4 C 0.25 6.25 5.16 -5.19 -0.03 6.23 16 5 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.58 12.64 7.49 -12.53 -0.09 12.54 16 14 O -0.52 -13.69 16.69 5.27 0.09 -13.60 16 15 C -0.21 -3.82 4.47 -102.90 -0.46 -4.28 16 16 C 0.00 0.02 7.25 -34.63 -0.25 -0.23 16 17 C -0.08 -0.91 10.33 36.01 0.37 -0.53 16 18 O 0.10 1.49 11.06 18.65 0.21 1.70 16 19 N -0.34 -5.55 12.01 34.78 0.42 -5.14 16 20 C 0.04 0.73 6.75 -79.76 -0.54 0.19 16 21 C 0.16 2.14 7.01 36.01 0.25 2.39 16 22 O -0.56 -8.03 13.64 -35.23 -0.48 -8.51 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.66 4.94 -51.93 -0.26 0.40 16 26 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 27 H 0.06 0.89 6.66 -51.92 -0.35 0.54 16 28 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.08 1.01 6.36 -51.93 -0.33 0.68 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 3.25 9.12 45.56 0.42 3.67 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -34.87 315.10 -4.37 -39.24 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.82 Total: 0.28 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.81 Total: 2.91 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.72 Total: -42.97 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.19 Total: -20.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.87 -4.37 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349784247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.307 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds