Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47533 * 2 1 4 4 C 1.46498 * 120.00058 * 270.00070 * 3 2 1 5 5 C 1.50700 * 109.46902 * 269.99934 * 4 3 2 6 6 H 1.08002 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99728 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00249 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47044 * 59.99269 * 9 7 5 11 11 H 1.48501 * 109.46982 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46563 * 299.99651 * 9 7 5 13 13 C 1.34780 * 119.99771 * 89.99954 * 3 2 1 14 14 O 1.21609 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.47395 * 119.99949 * 359.97438 * 13 3 2 16 16 C 1.37360 * 128.56547 * 90.14016 * 15 13 3 17 17 C 1.50701 * 126.83087 * 359.97438 * 16 15 13 18 18 O 1.33493 * 106.34237 * 180.25775 * 16 15 13 19 19 N 1.20661 * 113.15824 * 359.73602 * 18 16 15 20 20 C 1.30013 * 112.29570 * 0.02562 * 19 18 16 21 21 C 1.50706 * 127.33065 * 179.97438 * 20 19 18 22 22 O 1.42906 * 109.46702 * 90.02568 * 21 20 19 23 23 H 1.09001 * 109.47111 * 59.99539 * 1 2 3 24 24 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47102 * 300.00041 * 1 2 3 26 26 H 1.09002 * 109.47102 * 239.99958 * 2 1 3 27 27 H 1.09008 * 109.46752 * 120.00415 * 2 1 3 28 28 H 1.08996 * 109.46855 * 29.99684 * 4 3 2 29 29 H 1.08996 * 109.46877 * 150.00090 * 4 3 2 30 30 H 0.96994 * 120.00475 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47532 * 180.28960 * 17 16 15 32 32 H 1.08997 * 109.47625 * 300.29359 * 17 16 15 33 33 H 1.09008 * 109.46890 * 60.28908 * 17 16 15 34 34 H 1.09000 * 109.47318 * 210.02147 * 21 20 19 35 35 H 1.09000 * 109.47161 * 330.02777 * 21 20 19 36 36 H 0.96698 * 113.99410 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8348 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6175 9 14 5.9135 2.0961 -3.4170 10 1 6.1402 0.6394 -3.5953 11 1 6.1611 2.7962 -4.7030 12 1 6.8414 2.6184 -2.3818 13 6 2.2431 2.0165 1.1673 14 8 2.6481 3.1631 1.1673 15 6 1.9968 1.3218 2.4437 16 6 2.8669 0.5619 3.1868 17 6 4.3059 0.2567 2.8596 18 8 2.1825 0.1423 4.2534 19 7 1.0415 0.5346 4.2695 20 6 0.7592 1.2731 3.2374 21 6 -0.5573 1.9338 2.9190 22 8 -0.5868 3.2402 3.4975 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0957 3.1409 -1.1383 30 1 3.6756 3.5169 -4.4434 31 1 4.7298 -0.3755 3.6398 32 1 4.3588 -0.2624 1.9027 33 1 4.8702 1.1875 2.7997 34 1 -0.6724 2.0125 1.8380 35 1 -1.3720 1.3366 3.3287 36 1 -1.4068 3.7252 3.3320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349784247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -50.256903 kcal Electronic energy + Delta-G solvation = -21275.379157 eV Core-core repulsion = 17955.237169 eV Total energy + Delta-G solvation = -3320.141988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.03025 -40.72064 -38.13890 -37.05567 -35.24834 -34.63173 -34.45266 -31.70624 -29.71690 -28.87403 -28.25749 -26.01598 -24.67361 -23.68394 -21.45424 -20.38564 -19.20311 -18.66778 -18.47889 -18.33953 -17.51333 -17.29492 -16.33970 -16.15536 -15.63597 -15.57270 -14.86262 -14.63840 -14.49886 -14.19280 -14.07209 -13.69982 -13.60688 -13.32134 -13.22466 -13.03982 -12.66873 -12.55433 -12.38866 -12.16535 -11.97811 -11.74722 -11.37969 -11.20211 -11.02419 -10.62758 -10.38950 -9.57176 -8.21302 -6.35743 0.22527 0.63266 1.38990 1.43503 1.45073 1.51577 1.73843 2.24857 2.42819 2.79958 3.09554 3.13914 3.56018 3.70056 3.91746 3.96748 4.08703 4.20310 4.33901 4.39183 4.48886 4.54635 4.62947 4.72187 4.86276 4.90321 5.01067 5.05889 5.19537 5.30536 5.54615 5.79658 6.04915 6.58012 6.70826 6.72297 7.04191 7.18385 7.37236 8.86307 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.006075 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.998191 B = 4607.905650 C = 5043.988134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.583 5.583 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.588 3.412 14 O -0.581 6.581 15 C -0.249 4.249 16 C 0.026 3.974 17 C -0.079 4.079 18 O 0.110 5.890 19 N -0.349 5.349 20 C 0.042 3.958 21 C 0.153 3.847 22 O -0.586 6.586 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.030 0.970 29 H -0.001 1.001 30 H 0.267 0.733 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.572 -10.388 11.360 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.313 5.313 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.375 3.625 14 O -0.462 6.462 15 C -0.257 4.257 16 C -0.037 4.037 17 C -0.136 4.136 18 O 0.045 5.955 19 N -0.054 5.054 20 C -0.120 4.120 21 C 0.075 3.925 22 O -0.395 6.395 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.517 -10.287 12.404 17.033 hybrid contribution 0.396 1.006 -1.481 1.834 sum -5.121 -9.281 10.924 15.221 Atomic orbital electron populations 1.22264 0.94569 1.03746 1.01882 1.21691 0.95539 0.81270 1.03486 1.48185 1.62460 1.14943 1.05667 1.18829 0.95939 0.91524 0.79505 1.21673 0.97611 1.32308 1.06675 0.92179 1.25843 1.02350 0.94381 0.96390 1.70036 1.37880 1.34079 1.14810 0.85480 0.79016 0.79122 0.77306 1.18221 1.20702 1.20150 1.17204 0.77515 0.84896 0.82917 1.90767 1.47980 1.19799 1.87651 1.21892 0.95696 1.07869 1.00216 1.25061 0.97711 0.94846 0.86126 1.20676 0.83014 1.04751 1.05160 1.84499 1.16352 1.56274 1.38375 1.73521 0.96787 1.14997 1.20088 1.24620 0.97203 0.99205 0.90997 1.20405 0.89896 0.84138 0.98093 1.86495 1.45933 1.28494 1.78599 0.93015 0.88618 0.92739 0.89660 0.90001 0.95176 0.98317 0.92399 0.85508 0.87933 0.89342 0.90770 0.88142 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 10.24 71.98 0.74 -3.48 16 2 C 0.10 3.19 5.95 86.38 0.51 3.70 16 3 N -0.58 -24.69 2.46 -830.08 -2.04 -26.73 16 4 C 0.26 13.84 5.16 85.63 0.44 14.28 16 5 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 6 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 9 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.59 26.00 7.49 86.65 0.65 26.65 16 14 O -0.58 -32.02 16.69 -4.06 -0.07 -32.09 16 15 C -0.25 -8.75 4.47 -18.75 -0.08 -8.84 16 16 C 0.03 0.73 7.25 25.48 0.18 0.92 16 17 C -0.08 -1.69 10.33 71.24 0.74 -0.95 16 18 O 0.11 3.02 11.06 76.98 0.85 3.87 16 19 N -0.35 -10.51 12.01 -44.79 -0.54 -11.04 16 20 C 0.04 1.32 6.75 45.16 0.30 1.62 16 21 C 0.15 3.97 7.01 71.24 0.50 4.47 16 22 O -0.59 -16.34 13.64 -148.98 -2.03 -18.37 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.34 4.94 -2.39 -0.01 1.33 16 26 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 27 H 0.08 2.21 6.66 -2.38 -0.02 2.20 16 28 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 29 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.07 1.92 6.36 -2.39 -0.02 1.90 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 6.50 9.12 -74.06 -0.68 5.83 16 Total: -1.00 -77.66 315.10 3.61 -74.05 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.44 Total: 10.32 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.69 Total: 9.31 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.29 Total: -92.55 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.25 Total: -46.59 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.66 3.61 -74.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349784247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.792 kcal (2) G-P(sol) polarization free energy of solvation -77.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds