Wall clock time and date at job start Mon Mar 30 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48502 * 109.47190 * 240.00477 * 3 2 1 5 5 H 1.48500 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46807 * 120.00258 * 3 2 1 7 7 C 1.38812 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99752 * 173.16852 * 9 7 2 11 11 C 1.52997 * 115.54721 * 294.62684 * 10 9 7 12 12 N 1.46495 * 109.47451 * 279.55745 * 11 10 9 13 13 C 1.34776 * 120.00408 * 176.03528 * 12 11 10 14 14 O 1.21286 * 119.99835 * 0.27707 * 13 12 11 15 15 C 1.50703 * 120.00420 * 179.97438 * 13 12 11 16 16 H 1.08998 * 110.48254 * 42.70225 * 15 13 12 17 17 C 1.54098 * 110.54802 * 280.00411 * 15 13 12 18 18 N 1.47057 * 103.85992 * 241.40132 * 17 15 13 19 19 C 1.33949 * 109.17747 * 0.02562 * 18 17 15 20 20 O 1.21596 * 123.04018 * 179.97438 * 19 18 17 21 21 N 1.33943 * 113.91833 * 359.97438 * 19 18 17 22 22 C 1.53000 * 117.51990 * 80.33100 * 10 9 7 23 23 C 1.52995 * 117.49571 * 148.95937 * 10 9 7 24 24 H 0.97000 * 120.00146 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99565 * 353.16153 * 9 7 2 26 26 H 1.09004 * 109.47037 * 159.56033 * 11 10 9 27 27 H 1.08996 * 109.47086 * 39.56263 * 11 10 9 28 28 H 0.97006 * 120.00035 * 356.03759 * 12 11 10 29 29 H 1.09003 * 110.55108 * 359.97438 * 17 15 13 30 30 H 1.09003 * 110.55064 * 122.81006 * 17 15 13 31 31 H 0.97003 * 125.41139 * 179.97438 * 18 17 15 32 32 H 0.97002 * 125.41288 * 180.02562 * 21 19 18 33 33 H 1.08999 * 117.49849 * 214.96746 * 22 10 9 34 34 H 1.09005 * 117.49867 * 359.97438 * 22 10 9 35 35 H 1.09000 * 117.50165 * 359.97367 * 23 10 9 36 36 H 1.09004 * 117.49429 * 144.99667 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0503 -3.6522 -0.1531 11 6 2.7444 -3.8574 -1.5011 12 7 1.7632 -4.3054 -2.4924 13 6 2.1326 -4.4745 -3.7775 14 8 3.2785 -4.2605 -4.1123 15 6 1.1234 -4.9360 -4.7971 16 1 0.1747 -4.4180 -4.6564 17 6 0.9248 -6.4616 -4.7095 18 7 1.3438 -6.9480 -6.0326 19 6 1.7265 -5.9067 -6.7832 20 8 2.1225 -6.0238 -7.9269 21 7 1.6335 -4.7247 -6.1600 22 6 2.7340 -4.2282 1.0885 23 6 1.4682 -4.8873 0.5371 24 1 -0.4850 0.8400 0.0004 25 1 0.3607 -2.3910 0.0981 26 1 3.5253 -4.6106 -1.3967 27 1 3.1880 -2.9170 -1.8282 28 1 0.8477 -4.4805 -2.2238 29 1 1.5565 -6.8855 -3.9288 30 1 -0.1229 -6.7013 -4.5279 31 1 1.3437 -7.8756 -6.3163 32 1 1.8656 -3.8657 -6.5464 33 1 3.6783 -4.7535 0.9450 34 1 2.6450 -3.6665 2.0184 35 1 0.5462 -4.7593 1.1042 36 1 1.5797 -5.8461 0.0308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670845885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:02 Heat of formation + Delta-G solvation = -40.296631 kcal Electronic energy + Delta-G solvation = -20405.039154 eV Core-core repulsion = 17117.621827 eV Total energy + Delta-G solvation = -3287.417327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32282 -40.40970 -38.94198 -37.33453 -35.33498 -34.80185 -34.00016 -31.61542 -30.64129 -27.69632 -25.91854 -24.64923 -23.19622 -22.82009 -21.47913 -20.70122 -19.19677 -18.98618 -18.56470 -17.43071 -17.14514 -16.75744 -16.59585 -16.18050 -15.75804 -15.55470 -15.15023 -15.03661 -14.89344 -14.59795 -13.96764 -13.77158 -13.53341 -13.09719 -12.90435 -12.83461 -12.27614 -12.19527 -11.81495 -11.73666 -11.59067 -11.38404 -10.90811 -10.69492 -10.49940 -10.03199 -9.82311 -8.99167 -7.95783 -5.23248 1.43706 1.46737 1.48013 1.53225 1.74621 1.96306 2.23977 2.53411 3.03071 3.13530 3.33529 3.40551 3.65982 3.71882 3.89968 4.02674 4.24487 4.35686 4.39376 4.67156 4.72203 4.83522 4.89384 4.98061 5.10692 5.26031 5.42493 5.49868 5.56690 5.88484 6.21048 6.28568 6.28906 6.60636 7.23388 7.35145 7.51380 8.09729 8.32704 9.26066 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021539 B = 0.004655 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.646487 B = 6013.314590 C = 6756.348125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.958 3.042 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.066 0.934 9 N -0.697 5.697 10 C 0.098 3.902 11 C 0.159 3.841 12 N -0.692 5.692 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.105 3.895 16 H 0.152 0.848 17 C 0.109 3.891 18 N -0.727 5.727 19 C 0.696 3.304 20 O -0.640 6.640 21 N -0.717 5.717 22 C -0.191 4.191 23 C -0.146 4.146 24 H 0.251 0.749 25 H 0.379 0.621 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.416 0.584 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.442 0.558 32 H 0.432 0.568 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 -16.403 -3.300 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.788 3.212 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.084 0.916 9 N -0.336 5.336 10 C 0.006 3.994 11 C 0.033 3.967 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.005 4.005 16 H 0.169 0.831 17 C -0.016 4.016 18 N -0.390 5.390 19 C 0.394 3.606 20 O -0.522 6.522 21 N -0.377 5.377 22 C -0.231 4.231 23 C -0.183 4.183 24 H 0.060 0.940 25 H 0.212 0.788 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.253 0.747 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.286 0.714 32 H 0.273 0.727 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.617 -16.156 -4.069 16.739 hybrid contribution 0.072 1.592 0.076 1.595 sum -1.546 -14.565 -3.992 15.181 Atomic orbital electron populations 1.69748 1.06074 1.25967 1.59279 1.25341 0.96205 1.00278 1.03762 0.85455 0.77451 0.80442 0.77873 1.21321 1.22093 1.20607 1.19342 0.91072 0.84998 1.40900 0.91581 1.41785 1.05788 0.99657 1.86331 1.20354 1.01052 0.87086 0.90946 1.20970 0.90631 0.98149 0.86979 1.45748 1.14872 1.66413 1.07240 1.21328 0.89251 0.77543 0.83736 1.90729 1.22265 1.52748 1.80465 1.22144 0.97353 0.99653 0.81323 0.83072 1.22596 1.05232 0.88107 0.85641 1.45009 1.70334 1.08916 1.14721 1.16160 0.77933 0.82481 0.84019 1.90946 1.56256 1.86033 1.19014 1.44918 1.70639 1.08641 1.13538 1.23380 0.97391 1.04132 0.98225 1.23183 0.97238 0.95533 1.02366 0.94042 0.78760 0.90911 0.94669 0.74685 0.88366 0.83820 0.71443 0.72686 0.87697 0.90587 0.88811 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.97 13.07 21.65 0.28 -54.69 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.23 -11.99 9.56 84.03 0.80 -11.18 16 8 H 0.07 3.43 7.83 -2.91 -0.02 3.41 16 9 N -0.70 -30.74 5.49 -303.35 -1.66 -32.41 16 10 C 0.10 3.19 2.16 3.60 0.01 3.20 16 11 C 0.16 5.01 5.72 86.38 0.49 5.51 16 12 N -0.69 -16.86 5.52 -463.07 -2.55 -19.41 16 13 C 0.50 12.91 6.95 87.66 0.61 13.52 16 14 O -0.58 -21.39 16.56 -3.05 -0.05 -21.44 16 15 C 0.11 1.80 4.17 44.51 0.19 1.99 16 16 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 17 C 0.11 1.11 7.70 86.64 0.67 1.78 16 18 N -0.73 -11.91 6.37 -477.33 -3.04 -14.96 16 19 C 0.70 18.56 8.92 179.57 1.60 20.16 16 20 O -0.64 -23.27 18.05 -4.02 -0.07 -23.34 16 21 N -0.72 -17.01 5.60 -460.35 -2.58 -19.59 16 22 C -0.19 -5.49 10.10 30.59 0.31 -5.18 16 23 C -0.15 -3.40 10.07 30.59 0.31 -3.10 16 24 H 0.25 14.14 8.31 -92.71 -0.77 13.36 16 25 H 0.38 17.79 8.05 -92.71 -0.75 17.05 16 26 H 0.07 2.08 7.94 -2.38 -0.02 2.06 16 27 H 0.03 1.43 7.79 -2.39 -0.02 1.41 16 28 H 0.42 7.73 8.41 -92.70 -0.78 6.95 16 29 H 0.10 0.88 7.72 -2.39 -0.02 0.86 16 30 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.44 5.31 8.96 -92.71 -0.83 4.48 16 32 H 0.43 10.56 8.96 -92.71 -0.83 9.73 16 33 H 0.10 2.55 8.08 -2.39 -0.02 2.53 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.49 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.13 2.04 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -78.31 315.16 -4.23 -82.54 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -2.03 Total: 32.49 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 5.45 Total: 23.74 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -9.56 Total: -141.05 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.12 Total: -44.78 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.31 -4.23 -82.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670845885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.248 kcal (2) G-P(sol) polarization free energy of solvation -78.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds