Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47520 * 300.00643 * 3 2 1 6 6 H 1.48501 * 109.47007 * 60.00682 * 3 2 1 7 7 C 1.38810 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47007 * 34.99166 * 10 9 7 12 12 C 1.53003 * 109.46609 * 274.99832 * 10 9 7 13 13 O 1.42902 * 109.46730 * 294.99729 * 12 10 9 14 14 C 1.52996 * 109.47012 * 154.99714 * 10 9 7 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 C 1.50701 * 109.47355 * 180.02562 * 18 16 15 20 20 C 1.39867 * 125.89457 * 124.99912 * 19 18 16 21 21 C 1.35314 * 107.91704 * 180.02562 * 20 19 18 22 22 N 1.34942 * 107.74746 * 359.97438 * 21 20 19 23 23 H 0.97001 * 126.04006 * 180.02562 * 22 21 20 24 24 N 1.30833 * 125.89741 * 304.69610 * 19 18 16 25 25 H 0.97001 * 119.99765 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99675 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47566 * 55.00059 * 12 10 9 28 28 H 1.08998 * 109.46886 * 175.00317 * 12 10 9 29 29 H 0.96705 * 113.99732 * 180.02562 * 13 12 10 30 30 H 1.09004 * 109.47066 * 184.99751 * 14 10 9 31 31 H 1.08994 * 109.46974 * 64.99899 * 14 10 9 32 32 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 33 33 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 34 34 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 35 35 H 1.08000 * 126.04304 * 0.02562 * 20 19 18 36 36 H 1.08001 * 126.12942 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2123 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9688 -3.5505 0.5888 12 6 2.4218 -4.0356 -1.4376 13 8 1.2275 -4.2885 -2.1803 14 6 1.1809 -4.7521 0.6091 15 7 0.7344 -4.3355 1.9408 16 6 -0.0595 -5.1450 2.6693 17 8 -0.4002 -6.2207 2.2245 18 6 -0.5239 -4.7138 4.0366 19 6 -1.3919 -5.7906 4.6351 20 6 -1.1942 -6.4090 5.8739 21 6 -2.1822 -7.3171 6.0483 22 7 -2.9771 -7.2743 4.9587 23 1 -3.7669 -7.8166 4.8068 24 7 -2.4636 -6.3044 4.0881 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 0.0002 27 1 2.9714 -3.2165 -1.9013 28 1 3.0423 -4.9317 -1.4312 29 1 1.3826 -4.5352 -3.1025 30 1 1.7558 -5.6746 0.6908 31 1 0.3133 -4.9200 -0.0290 32 1 1.0066 -3.4750 2.2964 33 1 0.3412 -4.5465 4.6781 34 1 -1.0968 -3.7904 3.9512 35 1 -0.3944 -6.1990 6.5686 36 1 -2.3114 -7.9608 6.9058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700788511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = -31.220883 kcal Electronic energy + Delta-G solvation = -20060.540236 eV Core-core repulsion = 16773.516462 eV Total energy + Delta-G solvation = -3287.023773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05490 -40.47250 -38.56690 -36.36296 -35.11331 -33.92247 -33.04836 -30.79004 -30.41200 -29.28420 -26.35523 -25.54886 -22.61823 -21.64951 -21.58741 -20.38713 -19.36775 -18.95517 -18.15167 -17.88651 -17.19635 -16.54096 -16.28205 -15.68797 -15.34757 -15.25649 -14.94545 -14.68718 -14.33885 -14.31854 -14.11879 -13.84219 -13.47508 -13.05588 -12.90679 -12.68199 -12.63104 -12.17976 -11.83307 -11.70261 -11.51021 -11.03057 -10.82907 -10.71002 -10.31234 -9.92366 -9.56981 -8.97881 -7.87070 -5.16539 1.07798 1.52237 1.53373 1.62506 1.75546 1.81524 2.11787 2.50239 2.61044 3.45569 3.63404 3.69428 3.92940 3.98047 4.07651 4.17276 4.40849 4.47619 4.57124 4.60530 4.63864 4.80895 4.91716 4.92141 5.02057 5.15712 5.26905 5.56529 5.61496 5.73428 6.31541 6.57366 6.69476 6.83278 7.07352 7.37111 7.39658 8.11947 8.37673 9.36044 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.004329 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.928140 B = 6465.964121 C = 7364.507962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.303 1.303 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.723 5.723 10 C 0.162 3.838 11 H 0.083 0.917 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.132 3.868 15 N -0.711 5.711 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.058 4.058 19 C 0.069 3.931 20 C -0.285 4.285 21 C 0.068 3.932 22 N -0.478 5.478 23 H 0.448 0.552 24 N -0.324 5.324 25 H 0.248 0.752 26 H 0.372 0.628 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.385 0.615 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.412 0.588 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.172 0.828 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -13.521 11.640 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.231 1.231 6 H -0.223 1.223 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.053 3.947 11 H 0.101 0.899 12 C -0.018 4.018 13 O -0.392 6.392 14 C 0.007 3.993 15 N -0.363 5.363 16 C 0.297 3.703 17 O -0.460 6.460 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.314 4.314 21 C -0.079 4.079 22 N -0.188 5.188 23 H 0.294 0.706 24 N -0.149 5.149 25 H 0.057 0.943 26 H 0.203 0.797 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.190 0.810 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.824 -14.002 10.907 17.768 hybrid contribution 0.258 1.053 -0.306 1.127 sum 1.082 -12.949 10.600 16.769 Atomic orbital electron populations 1.69865 1.06730 1.25666 1.59581 1.25486 0.96100 1.00841 1.03964 0.85137 0.78441 0.80295 0.76203 1.18705 1.23128 1.22251 1.19670 0.91539 0.84774 1.40647 0.89910 1.42501 1.05361 1.00240 1.88135 1.20853 0.95168 0.85278 0.93426 0.89928 1.22907 0.86478 0.98574 0.93807 1.86539 1.33010 1.92061 1.27573 1.21298 0.98082 0.97027 0.82882 1.45936 1.50794 1.21965 1.17627 1.20916 0.77616 0.84055 0.87760 1.90670 1.57537 1.24482 1.73337 1.20129 1.00363 0.96733 0.92702 1.21937 0.94567 0.98269 0.95006 1.21792 1.05979 1.04314 0.99337 1.23303 0.91678 0.99967 0.92978 1.46455 1.25668 1.32041 1.14622 0.70632 1.77363 1.14554 1.06352 1.16588 0.94344 0.79665 0.94414 0.91711 0.76754 0.90788 0.93915 0.75128 0.83426 0.86730 0.81032 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -12.12 9.93 84.03 0.83 -11.28 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.72 -34.44 4.51 -322.93 -1.46 -35.89 16 10 C 0.16 6.02 2.84 44.99 0.13 6.15 16 11 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 12 C 0.06 2.11 6.86 71.98 0.49 2.60 16 13 O -0.59 -21.05 12.64 -148.98 -1.88 -22.94 16 14 C 0.13 4.81 5.12 86.38 0.44 5.25 16 15 N -0.71 -24.58 5.39 -463.07 -2.49 -27.07 16 16 C 0.51 18.05 7.82 87.66 0.69 18.74 16 17 O -0.58 -25.22 15.57 -3.04 -0.05 -25.26 16 18 C -0.06 -1.57 6.28 29.10 0.18 -1.39 16 19 C 0.07 2.02 6.01 43.10 0.26 2.28 16 20 C -0.29 -6.04 10.72 21.99 0.24 -5.81 16 21 C 0.07 1.14 11.99 83.54 1.00 2.14 16 22 N -0.48 -10.66 7.36 -57.59 -0.42 -11.08 16 23 H 0.45 6.93 8.96 -213.33 -1.91 5.02 16 24 N -0.32 -10.74 12.06 -47.39 -0.57 -11.31 16 25 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.37 20.27 7.80 -92.71 -0.72 19.55 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.38 9.78 9.12 -74.05 -0.68 9.11 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.04 1.84 7.39 -2.39 -0.02 1.82 16 32 H 0.41 13.75 8.14 -92.71 -0.75 13.00 16 33 H 0.15 2.77 8.12 -2.39 -0.02 2.75 16 34 H 0.11 3.01 8.14 -2.39 -0.02 3.00 16 35 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -79.96 316.95 -2.76 -82.71 By element: Atomic # 1 Polarization: 50.01 SS G_CDS: -2.92 Total: 47.09 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 4.73 Total: 15.21 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -4.66 Total: -143.34 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.93 Total: -48.20 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -79.96 -2.76 -82.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700788511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.493 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds