Wall clock time and date at job start Mon Mar 30 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35366 * 117.00335 * 2 1 4 4 C 1.36095 * 125.57939 * 180.02562 * 3 2 1 5 5 C 1.39911 * 107.17465 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67946 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.03284 * 179.97438 * 6 5 4 8 8 O 1.21770 * 119.99747 * 353.22817 * 7 6 5 9 9 N 1.34775 * 119.99815 * 173.22872 * 7 6 5 10 10 C 1.46493 * 120.00192 * 3.35792 * 9 7 6 11 11 C 1.46506 * 119.99612 * 183.35509 * 9 7 6 12 12 C 1.53005 * 109.46515 * 90.00005 * 11 9 7 13 13 N 1.46506 * 109.46515 * 180.02562 * 12 11 9 14 14 C 1.36937 * 119.99662 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00125 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46943 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47331 * 119.99761 * 18 16 14 21 21 H 1.48497 * 109.47252 * 240.00197 * 18 16 14 22 22 O 1.34012 * 125.57928 * 359.97438 * 3 2 1 23 23 H 1.08993 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46679 * 300.00457 * 1 2 3 25 25 H 1.08997 * 109.46719 * 59.99824 * 1 2 3 26 26 H 1.07997 * 126.41447 * 0.26129 * 4 3 2 27 27 H 1.07999 * 126.66251 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47356 * 84.01441 * 10 9 7 29 29 H 1.09003 * 109.47167 * 204.01570 * 10 9 7 30 30 H 1.09003 * 109.47350 * 324.01132 * 10 9 7 31 31 H 1.08997 * 109.47193 * 209.99470 * 11 9 7 32 32 H 1.08997 * 109.47549 * 330.00397 * 11 9 7 33 33 H 1.09000 * 109.47456 * 299.99694 * 12 11 9 34 34 H 1.09002 * 109.47351 * 59.99988 * 12 11 9 35 35 H 0.96996 * 120.00418 * 359.97438 * 13 12 11 36 36 H 0.97001 * 119.99681 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2061 0.0000 4 6 3.3894 1.4090 -0.0005 5 6 3.5986 2.7924 -0.0009 6 6 2.3523 3.3809 -0.0012 7 6 2.0796 4.8166 -0.0012 8 8 2.9948 5.6101 0.1236 9 7 0.8152 5.2623 -0.1391 10 6 -0.2937 4.3081 -0.2152 11 6 0.5498 6.7013 -0.2129 12 6 0.5971 7.1542 -1.6736 13 7 0.3323 8.5932 -1.7474 14 6 0.3227 9.2263 -2.9616 15 1 0.5108 8.6648 -3.8649 16 6 0.0713 10.5896 -3.0316 17 7 -0.1584 11.2738 -1.9309 18 14 0.0589 11.4533 -4.6879 19 1 0.3437 10.4682 -5.7620 20 1 -1.2747 12.0648 -4.9174 21 1 1.0985 12.5136 -4.7011 22 8 1.4266 2.3957 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.1529 0.6453 -0.0049 27 1 4.5516 3.3005 -0.0009 28 1 -0.5985 4.0241 0.7920 29 1 -1.1349 4.7691 -0.7329 30 1 0.0271 3.4210 -0.7615 31 1 -0.4368 6.9104 0.2005 32 1 1.3052 7.2399 0.3591 33 1 1.5837 6.9451 -2.0871 34 1 -0.1583 6.6155 -2.2458 35 1 0.1630 9.0975 -0.9362 36 1 -0.3345 12.2264 -1.9799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714772353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:31 Heat of formation + Delta-G solvation = -31.055916 kcal Electronic energy + Delta-G solvation = -20114.260848 eV Core-core repulsion = 16794.951477 eV Total energy + Delta-G solvation = -3319.309371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.97844 -39.63152 -38.73949 -36.04915 -34.39611 -33.36523 -31.50651 -29.93159 -28.35950 -27.48781 -26.34625 -24.07258 -22.46023 -22.19870 -21.29186 -19.92241 -18.79395 -17.47778 -17.32292 -17.15084 -16.08130 -15.71243 -15.55251 -14.89882 -14.40211 -14.29500 -13.56435 -13.46370 -13.38529 -13.24312 -13.19112 -12.97384 -12.77295 -12.56898 -12.04482 -11.89340 -11.28919 -11.00556 -10.88499 -10.69038 -10.21827 -10.17404 -10.04323 -9.72958 -8.86936 -8.65335 -8.23904 -6.92520 -5.75156 -3.04513 0.92975 1.96540 2.16909 2.78253 3.08697 3.22463 3.45274 3.50911 3.53299 4.45542 4.61600 4.63076 4.64436 4.67945 4.96556 5.10701 5.21956 5.34541 5.41781 5.49157 5.60807 5.65168 5.69652 5.81304 6.00498 6.09507 6.11029 6.23593 6.53263 6.72703 6.85214 6.88963 7.38215 7.72176 8.11475 8.43245 9.54357 10.09935 10.45282 11.47821 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035288 B = 0.003469 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.278855 B = 8069.425212 C = 8277.607205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.201 3.799 4 C -0.239 4.239 5 C -0.086 4.086 6 C -0.092 4.092 7 C 0.600 3.400 8 O -0.514 6.514 9 N -0.603 5.603 10 C 0.077 3.923 11 C 0.107 3.893 12 C 0.142 3.858 13 N -0.730 5.730 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 O -0.182 6.182 23 H 0.109 0.891 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.162 0.838 27 H 0.167 0.833 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.384 0.616 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -24.435 6.346 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.178 6.178 3 C 0.105 3.895 4 C -0.259 4.259 5 C -0.106 4.106 6 C -0.142 4.142 7 C 0.388 3.612 8 O -0.391 6.391 9 N -0.335 5.335 10 C -0.066 4.066 11 C -0.015 4.015 12 C 0.013 3.987 13 N -0.375 5.375 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 O -0.083 6.083 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.179 0.821 27 H 0.185 0.815 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.218 0.782 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.563 -24.098 6.233 24.897 hybrid contribution -0.400 0.520 -0.676 0.942 sum 0.163 -23.578 5.558 24.225 Atomic orbital electron populations 1.23180 0.76676 1.04933 1.02749 1.86397 1.23091 1.19038 1.89268 1.20924 0.89754 0.78608 1.00237 1.20766 0.92093 0.96869 1.16153 1.21991 0.97900 0.92483 0.98242 1.22056 0.86942 0.87343 1.17832 1.16486 0.83276 0.83911 0.77494 1.90938 1.43956 1.53689 1.50523 1.47679 1.05990 1.08125 1.71713 1.21974 0.89918 0.92886 1.01850 1.21808 1.02427 0.77807 0.99416 1.20924 0.98057 0.87050 0.92633 1.42212 1.85931 1.02210 1.07163 1.19257 1.40500 0.91251 0.85899 0.91115 1.24755 1.02653 0.96441 0.97156 1.69675 1.55220 1.07471 1.25807 0.86083 0.77165 0.79553 0.83204 1.20544 1.21846 1.21783 1.84245 1.37120 1.14061 1.72894 0.87238 0.91772 0.91708 0.82070 0.81498 0.92579 0.90064 0.90602 0.90071 0.89237 0.95820 0.96340 0.78209 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.33 10.55 -41.02 -0.43 -2.76 16 3 C 0.20 2.12 7.86 29.96 0.24 2.36 16 4 C -0.24 -2.47 10.89 -39.73 -0.43 -2.90 16 5 C -0.09 -1.03 10.67 -39.11 -0.42 -1.45 16 6 C -0.09 -1.25 6.79 -36.57 -0.25 -1.50 16 7 C 0.60 9.89 7.63 -13.09 -0.10 9.79 16 8 O -0.51 -10.22 16.44 5.13 0.08 -10.13 16 9 N -0.60 -9.17 2.87 -183.32 -0.53 -9.69 16 10 C 0.08 0.85 9.62 59.84 0.58 1.43 16 11 C 0.11 1.88 5.52 -4.04 -0.02 1.86 16 12 C 0.14 3.05 6.58 -4.04 -0.03 3.02 16 13 N -0.73 -19.25 5.60 -59.90 -0.34 -19.58 16 14 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 15 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 18 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 O -0.18 -2.09 6.76 -19.26 -0.13 -2.22 16 23 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 30 H 0.08 0.80 5.40 -51.93 -0.28 0.51 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.87 16 32 H 0.09 1.72 7.38 -51.93 -0.38 1.33 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -34.34 315.59 -5.22 -39.56 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.74 Total: 3.98 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.40 Total: 6.25 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.14 Total: -57.25 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.48 Total: -15.11 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.34 -5.22 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714772353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.509 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds