Wall clock time and date at job start Mon Mar 30 2020 01:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35366 * 117.00335 * 2 1 4 4 C 1.36095 * 125.57939 * 180.02562 * 3 2 1 5 5 C 1.39911 * 107.17465 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67946 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.03284 * 179.97438 * 6 5 4 8 8 O 1.21770 * 119.99747 * 353.22817 * 7 6 5 9 9 N 1.34775 * 119.99815 * 173.22872 * 7 6 5 10 10 C 1.46493 * 120.00192 * 3.35792 * 9 7 6 11 11 C 1.46506 * 119.99612 * 183.35509 * 9 7 6 12 12 C 1.53005 * 109.46515 * 90.00005 * 11 9 7 13 13 N 1.46506 * 109.46515 * 180.02562 * 12 11 9 14 14 C 1.36937 * 119.99662 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00125 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46943 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47331 * 119.99761 * 18 16 14 21 21 H 1.48497 * 109.47252 * 240.00197 * 18 16 14 22 22 O 1.34012 * 125.57928 * 359.97438 * 3 2 1 23 23 H 1.08993 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46679 * 300.00457 * 1 2 3 25 25 H 1.08997 * 109.46719 * 59.99824 * 1 2 3 26 26 H 1.07997 * 126.41447 * 0.26129 * 4 3 2 27 27 H 1.07999 * 126.66251 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47356 * 84.01441 * 10 9 7 29 29 H 1.09003 * 109.47167 * 204.01570 * 10 9 7 30 30 H 1.09003 * 109.47350 * 324.01132 * 10 9 7 31 31 H 1.08997 * 109.47193 * 209.99470 * 11 9 7 32 32 H 1.08997 * 109.47549 * 330.00397 * 11 9 7 33 33 H 1.09000 * 109.47456 * 299.99694 * 12 11 9 34 34 H 1.09002 * 109.47351 * 59.99988 * 12 11 9 35 35 H 0.96996 * 120.00418 * 359.97438 * 13 12 11 36 36 H 0.97001 * 119.99681 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2061 0.0000 4 6 3.3894 1.4090 -0.0005 5 6 3.5986 2.7924 -0.0009 6 6 2.3523 3.3809 -0.0012 7 6 2.0796 4.8166 -0.0012 8 8 2.9948 5.6101 0.1236 9 7 0.8152 5.2623 -0.1391 10 6 -0.2937 4.3081 -0.2152 11 6 0.5498 6.7013 -0.2129 12 6 0.5971 7.1542 -1.6736 13 7 0.3323 8.5932 -1.7474 14 6 0.3227 9.2263 -2.9616 15 1 0.5108 8.6648 -3.8649 16 6 0.0713 10.5896 -3.0316 17 7 -0.1584 11.2738 -1.9309 18 14 0.0589 11.4533 -4.6879 19 1 0.3437 10.4682 -5.7620 20 1 -1.2747 12.0648 -4.9174 21 1 1.0985 12.5136 -4.7011 22 8 1.4266 2.3957 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.1529 0.6453 -0.0049 27 1 4.5516 3.3005 -0.0009 28 1 -0.5985 4.0241 0.7920 29 1 -1.1349 4.7691 -0.7329 30 1 0.0271 3.4210 -0.7615 31 1 -0.4368 6.9104 0.2005 32 1 1.3052 7.2399 0.3591 33 1 1.5837 6.9451 -2.0871 34 1 -0.1583 6.6155 -2.2458 35 1 0.1630 9.0975 -0.9362 36 1 -0.3345 12.2264 -1.9799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714772353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:30 Heat of formation + Delta-G solvation = -54.953340 kcal Electronic energy + Delta-G solvation = -20115.297118 eV Core-core repulsion = 16794.951477 eV Total energy + Delta-G solvation = -3320.345641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.86091 -40.84104 -39.47642 -37.52428 -36.18383 -34.27904 -33.45664 -31.08652 -29.69568 -28.24507 -27.50083 -25.82045 -23.93602 -23.06757 -22.67945 -21.02519 -19.63394 -19.24546 -18.51061 -18.18782 -17.40093 -16.85045 -16.42262 -16.28124 -15.71833 -15.69718 -15.16237 -15.03987 -14.70102 -14.40959 -14.21938 -14.06409 -13.99552 -13.11018 -13.06883 -12.98794 -12.89368 -12.73713 -12.46203 -12.36356 -12.09599 -11.89096 -11.43719 -11.10699 -11.00352 -9.90735 -9.13987 -9.08225 -7.98836 -5.29903 -0.06637 1.07813 1.29693 1.46342 1.48374 1.58340 1.78760 2.04820 2.23691 2.55228 3.34539 3.49277 3.74755 4.00004 4.09204 4.16883 4.23804 4.26262 4.30740 4.34631 4.51621 4.53916 4.60703 4.70882 4.84523 4.85442 4.95076 5.03836 5.23555 5.30690 5.43239 5.50443 6.08542 6.20919 6.22714 6.88815 7.29082 7.99558 8.25728 9.24682 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035288 B = 0.003469 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.278855 B = 8069.425212 C = 8277.607205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.266 6.266 3 C 0.213 3.787 4 C -0.243 4.243 5 C -0.078 4.078 6 C -0.121 4.121 7 C 0.596 3.404 8 O -0.563 6.563 9 N -0.603 5.603 10 C 0.074 3.926 11 C 0.122 3.878 12 C 0.148 3.852 13 N -0.742 5.742 14 C -0.251 4.251 15 H 0.073 0.927 16 C -0.072 4.072 17 N -0.967 5.967 18 Si 0.978 3.022 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.292 1.292 22 O -0.178 6.178 23 H 0.138 0.862 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.186 0.814 27 H 0.171 0.829 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.001 0.999 34 H 0.031 0.969 35 H 0.377 0.623 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -26.670 5.815 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.179 6.179 3 C 0.115 3.885 4 C -0.262 4.262 5 C -0.099 4.099 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.444 6.444 9 N -0.334 5.334 10 C -0.068 4.068 11 C -0.001 4.001 12 C 0.020 3.980 13 N -0.386 5.386 14 C -0.383 4.383 15 H 0.091 0.909 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.807 3.193 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.219 1.219 22 O -0.079 6.079 23 H 0.156 0.844 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.204 0.796 27 H 0.189 0.811 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.019 0.981 34 H 0.049 0.951 35 H 0.209 0.791 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.293 -26.402 5.696 27.011 hybrid contribution -0.176 1.012 -0.490 1.138 sum -0.469 -25.391 5.206 25.923 Atomic orbital electron populations 1.23533 0.74658 1.07052 1.03273 1.86431 1.25127 1.17712 1.88676 1.21206 0.90137 0.78781 0.98336 1.21051 0.92806 0.96474 1.15903 1.22232 0.97660 0.93465 0.96512 1.21477 0.87809 0.86481 1.21354 1.16838 0.82977 0.84966 0.76604 1.90897 1.45317 1.55299 1.52910 1.47735 1.06885 1.07585 1.71164 1.22214 0.88759 0.92272 1.03515 1.21468 1.02848 0.79379 0.96410 1.20959 0.96836 0.84774 0.95418 1.42381 1.85907 1.04099 1.06212 1.19625 1.39933 0.91852 0.86888 0.90880 1.25628 1.02799 0.97175 1.00883 1.69825 1.56362 1.07566 1.27967 0.85010 0.76971 0.78226 0.79134 1.19160 1.21371 1.21925 1.84193 1.36602 1.14051 1.73057 0.84448 0.91152 0.91279 0.79625 0.81116 0.90474 0.89054 0.89729 0.87909 0.91375 0.98060 0.95088 0.79098 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.74 113.37 1.22 1.28 16 2 O -0.27 -3.90 10.55 -64.35 -0.68 -4.58 16 3 C 0.21 3.98 7.86 67.32 0.53 4.51 16 4 C -0.24 -4.51 10.89 22.18 0.24 -4.27 16 5 C -0.08 -1.81 10.67 22.58 0.24 -1.57 16 6 C -0.12 -3.24 6.79 24.22 0.16 -3.07 16 7 C 0.60 19.93 7.63 86.29 0.66 20.59 16 8 O -0.56 -23.39 16.44 -4.57 -0.08 -23.47 16 9 N -0.60 -18.12 2.87 -852.09 -2.45 -20.57 16 10 C 0.07 1.50 9.62 127.77 1.23 2.73 16 11 C 0.12 4.31 5.52 86.38 0.48 4.79 16 12 C 0.15 6.42 6.58 86.38 0.57 6.99 16 13 N -0.74 -39.74 5.60 -343.42 -1.92 -41.66 16 14 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 15 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 18 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 O -0.18 -3.77 6.76 13.52 0.09 -3.68 16 23 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 30 H 0.08 1.60 5.40 -2.39 -0.01 1.58 16 31 H 0.10 3.18 8.07 -2.39 -0.02 3.16 16 32 H 0.07 2.72 7.38 -2.39 -0.02 2.70 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.38 20.99 7.67 -92.71 -0.71 20.28 16 36 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -74.53 315.59 4.29 -70.24 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.38 Total: 20.17 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.63 Total: 14.39 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.09 Total: -122.08 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.66 Total: -31.72 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.53 4.29 -70.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714772353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.289 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds