Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.35831 * 126.45824 * 2 1 4 4 H 0.97000 * 124.92206 * 359.97438 * 3 2 1 5 5 N 1.28464 * 110.16675 * 180.02562 * 3 2 1 6 6 C 1.31931 * 110.20873 * 359.97438 * 5 3 2 7 7 C 1.47522 * 126.46253 * 179.97438 * 6 5 3 8 8 O 1.21590 * 120.00479 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99615 * 359.75276 * 7 6 5 10 10 C 1.46499 * 119.99905 * 180.27229 * 9 7 6 11 11 C 1.52999 * 109.47437 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47437 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99737 * 90.00376 * 12 11 10 14 14 C 1.36938 * 119.99947 * 270.00586 * 12 11 10 15 15 H 1.07995 * 120.00380 * 23.04190 * 14 12 11 16 16 C 1.38810 * 119.99572 * 203.04467 * 14 12 11 17 17 N 1.31617 * 120.00362 * 12.93059 * 16 14 12 18 18 Si 1.86802 * 119.99965 * 192.92521 * 16 14 12 19 19 H 1.48500 * 109.46807 * 90.00365 * 18 16 14 20 20 H 1.48494 * 109.47334 * 209.99913 * 18 16 14 21 21 H 1.48498 * 109.47045 * 330.00272 * 18 16 14 22 22 C 1.35780 * 126.45847 * 180.34668 * 2 1 3 23 23 O 1.36084 * 127.26854 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.46829 * 89.97339 * 1 2 3 25 25 H 1.08995 * 109.47260 * 209.97445 * 1 2 3 26 26 H 1.08996 * 109.46776 * 329.97771 * 1 2 3 27 27 H 0.96998 * 120.00510 * 0.27452 * 9 7 6 28 28 H 1.08995 * 109.47578 * 300.00286 * 10 9 7 29 29 H 1.09003 * 109.46918 * 60.00197 * 10 9 7 30 30 H 1.08995 * 109.47264 * 300.00838 * 11 10 9 31 31 H 1.09003 * 109.46613 * 60.00369 * 11 10 9 32 32 H 1.09001 * 109.46931 * 95.12216 * 13 12 11 33 33 H 1.09000 * 109.46846 * 215.12272 * 13 12 11 34 34 H 1.08996 * 109.47279 * 335.12418 * 13 12 11 35 35 H 0.97001 * 120.00367 * 179.97438 * 17 16 14 36 36 H 0.96710 * 114.00094 * 270.16296 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5473 0.7321 -0.0005 6 6 3.6374 -0.5841 -0.0004 7 6 4.8810 -1.3777 -0.0014 8 8 4.8271 -2.5925 -0.0016 9 7 6.0769 -0.7563 -0.0076 10 6 7.3119 -1.5444 -0.0147 11 6 8.5178 -0.6028 -0.0215 12 7 9.7528 -1.3908 -0.0292 13 6 10.3627 -1.7843 -1.3017 14 6 10.3369 -1.7597 1.1532 15 1 9.7447 -1.8130 2.0546 16 6 11.6904 -2.0650 1.1929 17 7 12.4640 -1.7610 0.1724 18 14 12.4142 -2.9073 2.6950 19 1 12.3410 -4.3801 2.5199 20 1 13.8324 -2.4980 2.8568 21 1 11.6445 -2.5134 3.9023 22 6 2.3140 -1.0920 -0.0066 23 8 1.9326 -2.3983 -0.0150 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 6.1200 0.2127 -0.0075 28 1 7.3467 -2.1733 0.8748 29 1 7.3369 -2.1726 -0.9051 30 1 8.4828 0.0259 -0.9112 31 1 8.4930 0.0258 0.8687 32 1 11.1318 -1.0618 -1.5747 33 1 10.8120 -2.7721 -1.1992 34 1 9.5980 -1.8118 -2.0780 35 1 13.4099 -1.9740 0.2003 36 1 1.8197 -2.7808 0.8660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = 18.070676 kcal Electronic energy + Delta-G solvation = -19854.061394 eV Core-core repulsion = 16569.175063 eV Total energy + Delta-G solvation = -3284.886331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.89350 -39.05096 -37.33394 -35.97410 -34.09020 -32.93488 -31.45156 -31.01877 -28.18475 -27.11239 -25.82590 -24.51698 -22.60741 -21.53344 -20.59909 -19.80287 -18.45441 -17.35934 -16.95144 -16.54513 -16.10958 -15.54243 -14.82164 -14.65354 -14.37615 -14.06509 -13.66906 -13.62602 -13.33356 -13.13849 -12.92645 -12.40948 -12.27821 -11.87429 -11.13003 -10.85311 -10.83152 -10.56052 -10.54762 -10.30193 -9.95700 -9.89589 -9.77458 -9.55875 -8.96002 -8.61808 -8.52273 -6.75669 -5.70271 -3.18360 1.38370 1.68842 2.46540 3.35298 3.42244 3.48259 3.49657 3.50124 4.08481 4.33617 4.43654 4.54435 4.77977 5.06856 5.23774 5.37992 5.43507 5.46001 5.68504 5.85951 5.89661 5.99930 6.32406 6.62197 6.65709 6.71085 6.81856 6.95528 7.41117 7.46556 7.54187 7.75416 7.84034 7.87915 8.40755 8.48903 9.25246 9.87660 10.36051 11.34570 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.003346 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.021821 B = 8365.072161 C = 8541.022534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.015 4.015 3 N -0.376 5.376 4 H 0.449 0.551 5 N -0.244 5.244 6 C -0.022 4.022 7 C 0.594 3.406 8 O -0.527 6.527 9 N -0.709 5.709 10 C 0.095 3.905 11 C 0.144 3.856 12 N -0.597 5.597 13 C 0.160 3.840 14 C -0.259 4.259 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.907 5.907 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.045 3.955 23 O -0.451 6.451 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.402 0.598 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.253 0.747 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.055 7.267 -0.199 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.093 5.093 4 H 0.294 0.706 5 N -0.081 5.081 6 C -0.184 4.184 7 C 0.376 3.624 8 O -0.401 6.401 9 N -0.360 5.360 10 C -0.031 4.031 11 C 0.015 3.985 12 N -0.320 5.320 13 C 0.016 3.984 14 C -0.388 4.388 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.552 5.552 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.010 4.010 23 O -0.257 6.257 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.236 0.764 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.063 0.937 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -23.144 7.270 -0.847 24.274 hybrid contribution -0.150 -0.269 1.251 1.289 sum -23.293 7.001 0.404 24.326 Atomic orbital electron populations 1.20276 0.86016 1.03797 1.03520 1.21552 0.95383 0.87488 1.09663 1.43043 1.02874 1.09201 1.54196 0.70559 1.73632 1.01585 1.14278 1.18613 1.22588 0.95735 0.89902 1.10217 1.16811 0.81624 0.86497 0.77423 1.90823 1.86590 1.12669 1.49995 1.45948 1.05665 1.10874 1.73558 1.22476 0.82435 0.95967 1.02233 1.20838 0.85872 0.92049 0.99728 1.43788 1.23819 1.60770 1.03632 1.20843 0.93635 0.99790 0.84135 1.19216 0.91196 1.40542 0.87854 0.91278 1.25030 0.95906 1.00936 0.97664 1.70074 1.04612 1.49545 1.30941 0.86224 0.78186 0.79561 0.82387 1.21403 1.21760 1.20439 1.17818 0.89089 0.85131 1.09005 1.84911 1.88706 1.19106 1.32938 0.90185 0.89550 0.91027 0.76357 0.91343 0.92006 0.94003 0.92868 0.94872 0.93930 0.98202 0.93719 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.44 36.01 0.38 0.01 16 2 C -0.01 -0.13 7.27 -81.70 -0.59 -0.72 16 3 N -0.38 -3.07 6.87 33.71 0.23 -2.84 16 4 H 0.45 1.78 8.96 -190.44 -1.71 0.07 16 5 N -0.24 -2.92 11.91 33.45 0.40 -2.52 16 6 C -0.02 -0.32 7.13 -82.69 -0.59 -0.91 16 7 C 0.59 10.41 7.82 -12.48 -0.10 10.31 16 8 O -0.53 -10.99 16.53 3.10 0.05 -10.94 16 9 N -0.71 -11.73 5.55 -61.35 -0.34 -12.07 16 10 C 0.09 1.84 6.00 -4.04 -0.02 1.81 16 11 C 0.14 2.97 5.76 -4.04 -0.02 2.94 16 12 N -0.60 -15.35 2.92 -181.12 -0.53 -15.88 16 13 C 0.16 4.06 8.98 59.85 0.54 4.59 16 14 C -0.26 -7.24 9.65 -15.06 -0.15 -7.39 16 15 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 16 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 17 N -0.91 -26.82 10.71 55.49 0.59 -26.22 16 18 Si 0.91 22.24 29.57 -169.99 -5.03 17.22 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.05 0.57 7.28 -39.12 -0.28 0.29 16 23 O -0.45 -5.59 13.20 -22.19 -0.29 -5.88 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.40 5.72 8.19 -40.82 -0.33 5.39 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 32 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 33 H 0.04 1.15 7.34 -51.93 -0.38 0.77 16 34 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.39 3.14 9.07 45.56 0.41 3.56 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -35.97 315.93 -6.39 -42.36 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.31 Total: 1.08 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.93 Total: 10.93 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.35 Total: -59.54 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.24 Total: -16.82 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.97 -6.39 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.432 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds