Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.35831 * 126.45824 * 2 1 4 4 H 0.97000 * 124.92206 * 359.97438 * 3 2 1 5 5 N 1.28464 * 110.16675 * 180.02562 * 3 2 1 6 6 C 1.31931 * 110.20873 * 359.97438 * 5 3 2 7 7 C 1.47522 * 126.46253 * 179.97438 * 6 5 3 8 8 O 1.21590 * 120.00479 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99615 * 359.75276 * 7 6 5 10 10 C 1.46499 * 119.99905 * 180.27229 * 9 7 6 11 11 C 1.52999 * 109.47437 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47437 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99737 * 90.00376 * 12 11 10 14 14 C 1.36938 * 119.99947 * 270.00586 * 12 11 10 15 15 H 1.07995 * 120.00380 * 23.04190 * 14 12 11 16 16 C 1.38810 * 119.99572 * 203.04467 * 14 12 11 17 17 N 1.31617 * 120.00362 * 12.93059 * 16 14 12 18 18 Si 1.86802 * 119.99965 * 192.92521 * 16 14 12 19 19 H 1.48500 * 109.46807 * 90.00365 * 18 16 14 20 20 H 1.48494 * 109.47334 * 209.99913 * 18 16 14 21 21 H 1.48498 * 109.47045 * 330.00272 * 18 16 14 22 22 C 1.35780 * 126.45847 * 180.34668 * 2 1 3 23 23 O 1.36084 * 127.26854 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.46829 * 89.97339 * 1 2 3 25 25 H 1.08995 * 109.47260 * 209.97445 * 1 2 3 26 26 H 1.08996 * 109.46776 * 329.97771 * 1 2 3 27 27 H 0.96998 * 120.00510 * 0.27452 * 9 7 6 28 28 H 1.08995 * 109.47578 * 300.00286 * 10 9 7 29 29 H 1.09003 * 109.46918 * 60.00197 * 10 9 7 30 30 H 1.08995 * 109.47264 * 300.00838 * 11 10 9 31 31 H 1.09003 * 109.46613 * 60.00369 * 11 10 9 32 32 H 1.09001 * 109.46931 * 95.12216 * 13 12 11 33 33 H 1.09000 * 109.46846 * 215.12272 * 13 12 11 34 34 H 1.08996 * 109.47279 * 335.12418 * 13 12 11 35 35 H 0.97001 * 120.00367 * 179.97438 * 17 16 14 36 36 H 0.96710 * 114.00094 * 270.16296 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5473 0.7321 -0.0005 6 6 3.6374 -0.5841 -0.0004 7 6 4.8810 -1.3777 -0.0014 8 8 4.8271 -2.5925 -0.0016 9 7 6.0769 -0.7563 -0.0076 10 6 7.3119 -1.5444 -0.0147 11 6 8.5178 -0.6028 -0.0215 12 7 9.7528 -1.3908 -0.0292 13 6 10.3627 -1.7843 -1.3017 14 6 10.3369 -1.7597 1.1532 15 1 9.7447 -1.8130 2.0546 16 6 11.6904 -2.0650 1.1929 17 7 12.4640 -1.7610 0.1724 18 14 12.4142 -2.9073 2.6950 19 1 12.3410 -4.3801 2.5199 20 1 13.8324 -2.4980 2.8568 21 1 11.6445 -2.5134 3.9023 22 6 2.3140 -1.0920 -0.0066 23 8 1.9326 -2.3983 -0.0150 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 6.1200 0.2127 -0.0075 28 1 7.3467 -2.1733 0.8748 29 1 7.3369 -2.1726 -0.9051 30 1 8.4828 0.0259 -0.9112 31 1 8.4930 0.0258 0.8687 32 1 11.1318 -1.0618 -1.5747 33 1 10.8120 -2.7721 -1.1992 34 1 9.5980 -1.8118 -2.0780 35 1 13.4099 -1.9740 0.2003 36 1 1.8197 -2.7808 0.8660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663166534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = -12.038719 kcal Electronic energy + Delta-G solvation = -19855.367035 eV Core-core repulsion = 16569.175063 eV Total energy + Delta-G solvation = -3286.191972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.74320 -40.45778 -38.23763 -37.81365 -35.72897 -33.78857 -33.17651 -32.06703 -29.84608 -27.93602 -27.75818 -25.96547 -24.16294 -22.42701 -22.31942 -21.13593 -19.29208 -18.78826 -18.18749 -17.96365 -17.16927 -17.02202 -16.52523 -16.26464 -15.43034 -15.23353 -15.18977 -15.02276 -14.66355 -14.28604 -14.16043 -13.72499 -13.30070 -13.05836 -12.80528 -12.72666 -12.67888 -12.48427 -12.18492 -11.97382 -11.80407 -11.57456 -11.14815 -10.66545 -10.50517 -10.06127 -9.74730 -8.84713 -7.84882 -5.35742 0.38044 0.85359 1.46377 1.48962 1.57018 1.75398 2.11598 2.24125 2.52285 3.10699 3.28953 3.65578 3.69740 3.80576 3.99454 4.20935 4.25411 4.45429 4.64842 4.76697 4.81267 4.83783 4.97591 5.02932 5.10164 5.21252 5.29192 5.43428 5.62017 5.68952 6.00243 6.30580 6.44196 6.74184 6.80583 7.11967 7.15245 7.82170 8.25697 9.18446 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.003346 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.021821 B = 8365.072161 C = 8541.022534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 N -0.350 5.350 4 H 0.470 0.530 5 N -0.247 5.247 6 C -0.058 4.058 7 C 0.592 3.408 8 O -0.569 6.569 9 N -0.700 5.700 10 C 0.115 3.885 11 C 0.148 3.852 12 N -0.616 5.616 13 C 0.173 3.827 14 C -0.269 4.269 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.267 1.267 22 C 0.014 3.986 23 O -0.468 6.468 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.415 0.585 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.030 0.970 35 H 0.250 0.750 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.533 8.815 0.361 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.071 5.071 4 H 0.320 0.680 5 N -0.086 5.086 6 C -0.218 4.218 7 C 0.377 3.623 8 O -0.447 6.447 9 N -0.351 5.351 10 C -0.011 4.011 11 C 0.021 3.979 12 N -0.339 5.339 13 C 0.028 3.972 14 C -0.399 4.399 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.583 5.583 18 Si 0.798 3.202 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.192 1.192 22 C -0.041 4.041 23 O -0.275 6.275 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.252 0.748 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -25.665 8.880 -0.276 27.159 hybrid contribution 0.459 -0.661 1.059 1.330 sum -25.206 8.219 0.783 26.523 Atomic orbital electron populations 1.20492 0.82632 1.05686 1.04735 1.22024 0.96962 0.86024 1.06388 1.43204 1.01801 1.10395 1.51737 0.68024 1.73544 1.03376 1.13005 1.18688 1.22196 0.95054 0.90895 1.13612 1.17231 0.82563 0.86311 0.76153 1.90785 1.87341 1.14609 1.51931 1.45731 1.04702 1.11268 1.73449 1.21957 0.83349 0.95372 1.00444 1.20923 0.84097 0.91862 1.01036 1.44022 1.25168 1.61644 1.03060 1.20610 0.93943 0.97583 0.85045 1.19528 0.91507 1.40159 0.88720 0.91145 1.25807 0.96391 1.01896 1.00506 1.70225 1.04562 1.50734 1.32747 0.85223 0.77240 0.78143 0.79575 1.21485 1.21805 1.19209 1.18135 0.89058 0.86025 1.10930 1.84858 1.88601 1.19617 1.34452 0.89112 0.88969 0.87876 0.74816 0.93671 0.93409 0.91809 0.92236 0.96934 0.96642 0.95108 0.94119 0.74353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.44 71.24 0.74 0.33 16 2 C 0.01 0.19 7.27 41.37 0.30 0.49 16 3 N -0.35 -4.64 6.87 -47.26 -0.32 -4.96 16 4 H 0.47 1.85 8.96 -219.99 -1.97 -0.12 16 5 N -0.25 -5.44 11.91 -48.09 -0.57 -6.02 16 6 C -0.06 -1.63 7.13 42.45 0.30 -1.33 16 7 C 0.59 21.00 7.82 86.69 0.68 21.67 16 8 O -0.57 -24.49 16.53 -1.91 -0.03 -24.52 16 9 N -0.70 -22.99 5.55 -466.29 -2.59 -25.58 16 10 C 0.12 4.50 6.00 86.38 0.52 5.02 16 11 C 0.15 6.01 5.76 86.38 0.50 6.50 16 12 N -0.62 -31.74 2.92 -726.95 -2.12 -33.87 16 13 C 0.17 8.84 8.98 127.77 1.15 9.98 16 14 C -0.27 -15.15 9.65 84.03 0.81 -14.34 16 15 H 0.07 3.86 7.86 -2.91 -0.02 3.84 16 16 C -0.05 -2.90 5.10 84.86 0.43 -2.47 16 17 N -0.94 -56.25 10.71 21.65 0.23 -56.02 16 18 Si 0.97 46.05 29.57 68.60 2.03 48.08 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 C 0.01 0.34 7.28 22.57 0.16 0.51 16 23 O -0.47 -11.43 13.20 -92.42 -1.22 -12.65 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.42 11.40 8.19 -92.71 -0.76 10.64 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.06 2.34 8.04 -2.39 -0.02 2.33 16 32 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 33 H 0.01 0.83 7.34 -2.39 -0.02 0.81 16 34 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 35 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.40 6.49 9.07 -74.05 -0.67 5.82 16 Total: -1.00 -79.16 315.93 -1.27 -80.43 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -2.27 Total: 8.73 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 5.60 Total: 26.39 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.38 Total: -126.45 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.25 Total: -37.17 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.16 -1.27 -80.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.388 kcal (2) G-P(sol) polarization free energy of solvation -79.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds