Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00060 * 2 1 4 4 H 1.07997 * 119.99929 * 200.35814 * 3 2 1 5 5 C 1.38816 * 119.99878 * 20.36278 * 3 2 1 6 6 N 1.31614 * 120.00106 * 14.98645 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 194.98612 * 5 3 2 8 8 H 1.48498 * 109.46969 * 84.99910 * 7 5 3 9 9 H 1.48494 * 109.46982 * 205.00312 * 7 5 3 10 10 H 1.48502 * 109.47185 * 325.00331 * 7 5 3 11 11 C 1.46502 * 119.99928 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47266 * 270.00292 * 11 2 1 13 13 N 1.46502 * 109.47266 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99857 * 179.97438 * 13 12 11 15 15 O 1.21278 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47474 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47291 * 180.02562 * 17 16 14 19 19 C 1.34599 * 126.43721 * 125.00343 * 18 17 16 20 20 N 1.31070 * 106.67912 * 180.02562 * 19 18 17 21 21 N 1.28842 * 107.98958 * 359.97438 * 20 19 18 22 22 N 1.28738 * 109.39874 * 359.73921 * 21 20 19 23 23 H 1.08994 * 109.47527 * 275.09426 * 1 2 3 24 24 H 1.08996 * 109.46969 * 35.09458 * 1 2 3 25 25 H 1.08998 * 109.46882 * 155.09581 * 1 2 3 26 26 H 0.96997 * 120.00075 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47145 * 150.00445 * 11 2 1 28 28 H 1.08992 * 109.47352 * 30.00046 * 11 2 1 29 29 H 1.08996 * 109.47343 * 59.99882 * 12 11 2 30 30 H 1.09006 * 109.46841 * 300.00246 * 12 11 2 31 31 H 0.96996 * 119.99565 * 0.02562 * 13 12 11 32 32 H 1.09004 * 109.47418 * 300.01404 * 16 14 13 33 33 H 1.09003 * 109.46486 * 60.00326 * 16 14 13 34 34 H 1.08998 * 109.47589 * 300.00390 * 17 16 14 35 35 H 1.09009 * 109.47011 * 60.00497 * 17 16 14 36 36 H 1.07999 * 126.66261 * 0.03366 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3254 5 6 1.5206 2.3505 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2824 4.0127 0.0357 8 1 1.8683 4.4460 -1.3229 9 1 1.8223 5.0099 1.0351 10 1 3.7624 3.9033 0.0907 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 7 3.1844 -2.9789 1.4438 14 6 3.5216 -3.5618 2.6113 15 8 3.2187 -3.0360 3.6613 16 6 4.2740 -4.8675 2.6119 17 6 4.5291 -5.3085 4.0545 18 7 5.2611 -6.5776 4.0551 19 6 6.4289 -6.8265 4.6762 20 7 6.7311 -8.0764 4.4222 21 7 5.7973 -8.5695 3.6841 22 7 4.9045 -7.6682 3.4651 23 1 -0.3634 0.0912 1.0235 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3633 -0.9321 -0.4327 26 1 -0.0522 3.0974 1.3765 27 1 3.1499 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5129 29 1 1.5000 -1.8400 1.9571 30 1 3.0415 -0.9499 1.9568 31 1 3.4269 -3.3992 0.6040 32 1 3.6841 -5.6271 2.0989 33 1 5.2262 -4.7383 2.0974 34 1 5.1189 -4.5491 4.5678 35 1 3.5766 -5.4379 4.5687 36 1 7.0051 -6.1315 5.2689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663305113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = 105.320287 kcal Electronic energy + Delta-G solvation = -19494.110998 eV Core-core repulsion = 16245.300845 eV Total energy + Delta-G solvation = -3248.810153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.46460 -39.78518 -36.54925 -36.03342 -34.31920 -32.82136 -31.97824 -31.27084 -28.39823 -26.13425 -25.83834 -24.12411 -23.45626 -22.44816 -20.80845 -20.22810 -18.32131 -17.40862 -16.90952 -16.62786 -16.10749 -15.97898 -15.71170 -14.79354 -14.57082 -13.93914 -13.72139 -13.43679 -13.28584 -12.93156 -12.58070 -12.39728 -12.37417 -11.89254 -11.47324 -11.32501 -11.18499 -10.98006 -10.92457 -10.67383 -10.65058 -10.39489 -10.07414 -10.05491 -9.85920 -8.85650 -8.63715 -6.93726 -5.82566 -3.28207 0.93670 1.60549 1.95787 2.55631 3.19848 3.33672 3.39775 3.40834 3.84284 3.93038 4.15117 4.42111 4.46034 4.59500 4.84289 4.97538 5.13850 5.22040 5.31432 5.42213 5.52655 5.74691 5.80260 5.83547 6.15904 6.48850 6.58124 6.62952 6.81891 7.27600 7.53903 7.62710 7.72262 8.19077 8.28393 8.29854 9.12014 9.74791 10.21801 11.22456 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.002853 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.771410 B = 9811.518505 C =10040.371171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.596 5.596 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.143 3.857 12 C 0.092 3.908 13 N -0.719 5.719 14 C 0.514 3.486 15 O -0.544 6.544 16 C -0.158 4.158 17 C 0.130 3.870 18 N -0.307 5.307 19 C 0.162 3.838 20 N -0.310 5.310 21 N -0.079 5.079 22 N -0.092 5.092 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.000 1.000 26 H 0.254 0.746 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.398 0.602 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 -14.106 3.542 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.369 5.369 14 C 0.297 3.703 15 O -0.422 6.422 16 C -0.199 4.199 17 C 0.009 3.991 18 N -0.109 5.109 19 C -0.137 4.137 20 N -0.159 5.159 21 N -0.073 5.073 22 N -0.079 5.079 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.231 0.769 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.146 -14.799 3.764 17.307 hybrid contribution 0.522 1.841 -0.016 1.913 sum 8.668 -12.958 3.748 16.034 Atomic orbital electron populations 1.20860 0.82089 0.95769 0.99691 1.43960 1.02104 1.00353 1.85399 1.19212 0.97197 0.84791 1.38037 0.91124 1.25019 0.97812 0.98589 0.98116 1.70081 1.18712 1.27102 1.38914 0.86237 0.78653 0.83738 0.77667 1.21339 1.21664 1.20504 1.20998 0.96457 0.88995 0.92065 1.22634 0.95774 0.82436 1.02454 1.46190 1.57660 1.25308 1.07744 1.20060 0.79969 0.85580 0.84641 1.90759 1.55125 1.65160 1.31130 1.21919 1.03395 0.97749 0.96808 1.22049 0.99200 0.78767 0.99109 1.48870 1.17080 1.11946 1.33014 1.27797 0.88616 0.96647 1.00637 1.75014 1.21213 1.06151 1.13510 1.78655 0.96867 1.20430 1.11352 1.78882 1.22050 0.90373 1.16555 0.95071 0.93533 0.98175 0.93542 0.93266 0.93874 0.91961 0.91103 0.76880 0.87033 0.87950 0.85735 0.86511 0.74843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 9.02 59.85 0.54 4.34 16 2 N -0.60 -14.25 2.93 -181.13 -0.53 -14.78 16 3 C -0.26 -6.95 9.68 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 6 N -0.90 -25.77 10.67 55.49 0.59 -25.18 16 7 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 8 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.14 2.62 5.82 -4.04 -0.02 2.60 16 12 C 0.09 1.62 6.00 -4.04 -0.02 1.60 16 13 N -0.72 -8.93 5.56 -60.29 -0.33 -9.26 16 14 C 0.51 6.15 7.83 -10.99 -0.09 6.07 16 15 O -0.54 -8.78 15.98 5.56 0.09 -8.70 16 16 C -0.16 -1.16 5.84 -27.89 -0.16 -1.32 16 17 C 0.13 0.86 5.77 -4.04 -0.02 0.84 16 18 N -0.31 -2.50 3.44 -62.55 -0.22 -2.72 16 19 C 0.16 1.17 12.79 -90.39 -1.16 0.01 16 20 N -0.31 -3.47 12.36 29.59 0.37 -3.11 16 21 N -0.08 -1.01 13.43 60.35 0.81 -0.20 16 22 N -0.09 -1.04 13.08 60.35 0.79 -0.25 16 23 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 24 H 0.05 1.19 7.21 -51.93 -0.37 0.81 16 25 H 0.00 -0.01 7.84 -51.93 -0.41 -0.41 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 28 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.40 3.63 8.47 -40.82 -0.35 3.29 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.12 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.12 0.83 8.10 -51.92 -0.42 0.41 16 36 H 0.24 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -34.26 315.89 -4.71 -38.97 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.84 Total: -2.85 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.17 Total: 7.05 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 1.48 Total: -55.49 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.26 -4.71 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663305113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.289 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds