Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00060 * 2 1 4 4 H 1.07997 * 119.99929 * 200.35814 * 3 2 1 5 5 C 1.38816 * 119.99878 * 20.36278 * 3 2 1 6 6 N 1.31614 * 120.00106 * 14.98645 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 194.98612 * 5 3 2 8 8 H 1.48498 * 109.46969 * 84.99910 * 7 5 3 9 9 H 1.48494 * 109.46982 * 205.00312 * 7 5 3 10 10 H 1.48502 * 109.47185 * 325.00331 * 7 5 3 11 11 C 1.46502 * 119.99928 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47266 * 270.00292 * 11 2 1 13 13 N 1.46502 * 109.47266 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99857 * 179.97438 * 13 12 11 15 15 O 1.21278 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47474 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47291 * 180.02562 * 17 16 14 19 19 C 1.34599 * 126.43721 * 125.00343 * 18 17 16 20 20 N 1.31070 * 106.67912 * 180.02562 * 19 18 17 21 21 N 1.28842 * 107.98958 * 359.97438 * 20 19 18 22 22 N 1.28738 * 109.39874 * 359.73921 * 21 20 19 23 23 H 1.08994 * 109.47527 * 275.09426 * 1 2 3 24 24 H 1.08996 * 109.46969 * 35.09458 * 1 2 3 25 25 H 1.08998 * 109.46882 * 155.09581 * 1 2 3 26 26 H 0.96997 * 120.00075 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47145 * 150.00445 * 11 2 1 28 28 H 1.08992 * 109.47352 * 30.00046 * 11 2 1 29 29 H 1.08996 * 109.47343 * 59.99882 * 12 11 2 30 30 H 1.09006 * 109.46841 * 300.00246 * 12 11 2 31 31 H 0.96996 * 119.99565 * 0.02562 * 13 12 11 32 32 H 1.09004 * 109.47418 * 300.01404 * 16 14 13 33 33 H 1.09003 * 109.46486 * 60.00326 * 16 14 13 34 34 H 1.08998 * 109.47589 * 300.00390 * 17 16 14 35 35 H 1.09009 * 109.47011 * 60.00497 * 17 16 14 36 36 H 1.07999 * 126.66261 * 0.03366 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3254 5 6 1.5206 2.3505 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2824 4.0127 0.0357 8 1 1.8683 4.4460 -1.3229 9 1 1.8223 5.0099 1.0351 10 1 3.7624 3.9033 0.0907 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 7 3.1844 -2.9789 1.4438 14 6 3.5216 -3.5618 2.6113 15 8 3.2187 -3.0360 3.6613 16 6 4.2740 -4.8675 2.6119 17 6 4.5291 -5.3085 4.0545 18 7 5.2611 -6.5776 4.0551 19 6 6.4289 -6.8265 4.6762 20 7 6.7311 -8.0764 4.4222 21 7 5.7973 -8.5695 3.6841 22 7 4.9045 -7.6682 3.4651 23 1 -0.3634 0.0912 1.0235 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3633 -0.9321 -0.4327 26 1 -0.0522 3.0974 1.3765 27 1 3.1499 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5129 29 1 1.5000 -1.8400 1.9571 30 1 3.0415 -0.9499 1.9568 31 1 3.4269 -3.3992 0.6040 32 1 3.6841 -5.6271 2.0989 33 1 5.2262 -4.7383 2.0974 34 1 5.1189 -4.5491 4.5678 35 1 3.5766 -5.4379 4.5687 36 1 7.0051 -6.1315 5.2689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663305113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = 79.944355 kcal Electronic energy + Delta-G solvation = -19495.211381 eV Core-core repulsion = 16245.300845 eV Total energy + Delta-G solvation = -3249.910536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.16878 -40.83503 -37.93101 -37.03528 -35.72050 -33.56220 -33.33662 -32.50453 -29.84136 -27.94061 -26.89342 -24.96220 -24.74635 -23.33111 -22.37719 -21.33514 -19.06037 -18.74720 -18.10370 -17.57380 -17.00591 -16.90411 -16.75512 -16.55331 -15.80793 -15.32035 -14.99252 -14.78888 -14.29446 -14.13212 -14.00479 -13.63526 -13.20067 -13.10613 -12.80444 -12.64522 -12.52586 -12.45567 -12.19719 -12.09404 -11.99743 -11.86132 -11.77035 -11.35889 -11.04571 -10.65916 -10.08188 -8.89205 -7.85467 -5.32872 0.28226 0.99644 1.23393 1.47552 1.48723 1.56787 1.58362 2.20232 2.52741 3.25425 3.29536 3.47832 3.55983 3.68809 3.88631 3.91415 4.25071 4.27674 4.34259 4.38724 4.49314 4.66434 4.67373 4.81609 4.83791 5.07613 5.16499 5.24895 5.31680 5.46183 5.62890 5.71433 6.29643 6.54896 7.11682 7.24084 7.57132 7.83636 8.25194 9.18225 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.002853 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.771410 B = 9811.518505 C =10040.371171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.615 5.615 3 C -0.265 4.265 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.144 3.856 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.516 3.484 15 O -0.587 6.587 16 C -0.141 4.141 17 C 0.130 3.870 18 N -0.302 5.302 19 C 0.182 3.818 20 N -0.345 5.345 21 N -0.112 5.112 22 N -0.109 5.109 23 H 0.001 0.999 24 H 0.019 0.981 25 H 0.037 0.963 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.418 0.582 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 -14.835 3.007 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.338 5.338 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.017 3.983 12 C -0.012 4.012 13 N -0.361 5.361 14 C 0.302 3.698 15 O -0.468 6.468 16 C -0.182 4.182 17 C 0.010 3.990 18 N -0.104 5.104 19 C -0.116 4.116 20 N -0.193 5.193 21 N -0.106 5.106 22 N -0.097 5.097 23 H 0.019 0.981 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.255 0.745 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 10.011 -15.591 3.191 18.801 hybrid contribution -0.011 2.005 0.169 2.012 sum 10.000 -13.586 3.360 17.200 Atomic orbital electron populations 1.20608 0.82522 0.96437 0.97648 1.44202 1.02343 1.01725 1.85570 1.19586 0.97428 0.85974 1.36543 0.90452 1.25795 0.98592 1.01928 0.98748 1.70252 1.20284 1.27277 1.40693 0.85253 0.78397 0.79606 0.77009 1.21061 1.22548 1.19204 1.21153 0.97132 0.87442 0.92546 1.21923 0.94408 0.83881 1.01007 1.45894 1.57228 1.23710 1.09306 1.20760 0.79103 0.86493 0.83434 1.90752 1.56709 1.66634 1.32660 1.21801 1.03843 0.94693 0.97838 1.22167 0.99565 0.78534 0.98781 1.48924 1.17345 1.11530 1.32625 1.28686 0.87807 0.96022 0.99040 1.74947 1.21722 1.08185 1.14444 1.78637 0.97762 1.21565 1.12680 1.78816 1.22245 0.91176 1.17427 0.98112 0.96237 0.94446 0.94296 0.91658 0.90840 0.94652 0.94731 0.74500 0.86040 0.85449 0.83366 0.87023 0.69984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.24 9.02 127.77 1.15 9.39 16 2 N -0.62 -29.11 2.93 -726.96 -2.13 -31.24 16 3 C -0.27 -13.93 9.68 84.03 0.81 -13.12 16 4 H 0.08 3.87 7.86 -2.91 -0.02 3.85 16 5 C -0.06 -3.04 5.06 84.86 0.43 -2.61 16 6 N -0.94 -55.01 10.67 21.65 0.23 -54.78 16 7 Si 0.97 44.03 29.58 68.60 2.03 46.06 16 8 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 C 0.14 4.98 5.82 86.38 0.50 5.49 16 12 C 0.11 3.95 6.00 86.38 0.52 4.46 16 13 N -0.71 -16.06 5.56 -463.06 -2.57 -18.63 16 14 C 0.52 11.27 7.83 87.66 0.69 11.96 16 15 O -0.59 -18.42 15.98 -3.02 -0.05 -18.47 16 16 C -0.14 -1.61 5.84 29.85 0.17 -1.44 16 17 C 0.13 1.34 5.77 86.38 0.50 1.84 16 18 N -0.30 -4.10 3.44 -351.82 -1.21 -5.31 16 19 C 0.18 2.07 12.79 180.27 2.31 4.38 16 20 N -0.34 -7.17 12.36 -60.30 -0.75 -7.91 16 21 N -0.11 -2.79 13.43 37.01 0.50 -2.29 16 22 N -0.11 -2.29 13.08 37.02 0.48 -1.81 16 23 H 0.00 0.03 7.40 -2.39 -0.02 0.01 16 24 H 0.02 0.99 7.21 -2.39 -0.02 0.98 16 25 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 26 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 28 H 0.07 2.12 7.86 -2.39 -0.02 2.10 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.42 6.19 8.47 -92.71 -0.79 5.41 16 32 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.15 0.88 8.04 -2.39 -0.02 0.86 16 35 H 0.11 1.34 8.10 -2.38 -0.02 1.33 16 36 H 0.28 -0.19 8.06 -2.91 -0.02 -0.21 16 Total: -1.00 -77.63 315.89 3.93 -73.70 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 0.31 Total: 0.33 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 7.08 Total: 20.34 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -5.44 Total: -121.96 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.63 3.93 -73.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663305113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.648 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds