Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 H 1.08993 * 109.47037 * 55.00335 * 3 2 1 5 5 C 1.50697 * 109.46969 * 175.00682 * 3 2 1 6 6 O 1.21283 * 120.00521 * 119.72525 * 5 3 2 7 7 N 1.34784 * 119.99774 * 299.99631 * 5 3 2 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 3 9 9 H 1.09002 * 109.47048 * 324.99733 * 8 7 5 10 10 C 1.52995 * 109.47258 * 85.00288 * 8 7 5 11 11 C 1.50700 * 109.46791 * 205.00137 * 8 7 5 12 12 H 1.08003 * 120.00276 * 359.97438 * 11 8 7 13 13 C 1.37882 * 120.00054 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99842 * 179.97438 * 13 11 8 15 15 Si 1.86794 * 119.99712 * 359.97438 * 13 11 8 16 16 H 1.48502 * 109.47135 * 90.00428 * 15 13 11 17 17 H 1.48504 * 109.47203 * 210.00188 * 15 13 11 18 18 H 1.48496 * 109.47403 * 330.00435 * 15 13 11 19 19 N 1.46507 * 109.46806 * 295.00252 * 3 2 1 20 20 C 1.46757 * 124.34575 * 119.72952 * 19 3 2 21 21 C 1.54661 * 105.38031 * 162.84839 * 20 19 3 22 22 C 1.54625 * 101.68482 * 25.76727 * 21 20 19 23 23 C 1.34417 * 124.35184 * 300.02027 * 19 3 2 24 24 O 1.21282 * 124.94110 * 0.39158 * 23 19 3 25 25 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46346 * 299.99874 * 1 2 3 27 27 H 1.08992 * 109.47274 * 59.99752 * 1 2 3 28 28 H 1.09004 * 109.46761 * 240.00339 * 2 1 3 29 29 H 1.08992 * 109.47274 * 120.00248 * 2 1 3 30 30 H 0.97005 * 119.99846 * 359.72750 * 7 5 3 31 31 H 1.09003 * 109.47025 * 299.99449 * 10 8 7 32 32 H 1.09002 * 109.47544 * 59.99749 * 10 8 7 33 33 H 1.09007 * 109.47281 * 179.97438 * 10 8 7 34 34 H 0.96997 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.08992 * 110.24895 * 281.98137 * 20 19 3 36 36 H 1.09007 * 110.24758 * 43.98073 * 20 19 3 37 37 H 1.08994 * 111.19555 * 267.59157 * 21 20 19 38 38 H 1.09006 * 110.82017 * 143.77294 * 21 20 19 39 39 H 1.09003 * 110.48429 * 216.30703 * 22 21 20 40 40 H 1.09001 * 110.48894 * 93.66186 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 8 4.2219 1.9390 -0.7503 7 7 4.1299 0.8910 1.2030 8 6 5.5902 0.8874 1.3204 9 1 6.0338 0.7648 0.3323 10 6 6.0562 2.2119 1.9280 11 6 6.0198 -0.2515 2.2088 12 1 5.2792 -0.9069 2.6429 13 6 7.3584 -0.4564 2.4684 14 7 7.7332 -1.4500 3.2441 15 14 8.6393 0.6775 1.7181 16 1 8.8906 1.8169 2.6367 17 1 9.9021 -0.0744 1.5052 18 1 8.1437 1.1914 0.4161 19 7 1.6524 2.0975 -1.2519 20 6 0.8029 3.2914 -1.3331 21 6 1.0295 3.8602 -2.7534 22 6 1.4529 2.5942 -3.5338 23 6 2.0245 1.6788 -2.4738 24 8 2.7180 0.7086 -2.6943 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.5861 0.4953 1.9020 31 1 5.7455 3.0357 1.2854 32 1 5.6126 2.3346 2.9161 33 1 7.1428 2.2091 2.0158 34 1 8.6749 -1.5943 3.4263 35 1 -0.2436 3.0199 -1.1951 36 1 1.1060 4.0218 -0.5828 37 1 1.8251 4.6051 -2.7573 38 1 0.1059 4.2760 -3.1562 39 1 2.2126 2.8398 -4.2759 40 1 0.5879 2.1327 -4.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095404167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -68.885081 kcal Electronic energy + Delta-G solvation = -21594.902279 eV Core-core repulsion = 18409.785608 eV Total energy + Delta-G solvation = -3185.116672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63505 -38.64115 -36.20141 -35.04064 -34.69429 -32.30905 -30.98571 -29.95889 -27.57011 -26.87743 -25.13931 -22.32462 -21.95431 -21.60433 -19.77368 -18.87836 -17.36910 -16.83570 -16.46719 -16.04998 -15.30551 -14.84739 -14.57167 -14.20037 -13.96020 -13.60063 -13.49664 -13.19827 -12.98268 -12.92729 -12.61166 -12.47472 -12.17772 -11.82765 -11.75866 -11.63664 -11.32442 -11.13226 -11.06016 -10.94883 -10.78004 -10.15290 -9.68524 -9.46068 -9.28146 -9.19160 -8.71942 -8.44836 -8.08946 -6.17542 -4.19398 2.78007 3.03510 3.24491 3.27179 3.38322 3.44410 4.01480 4.35384 4.36528 4.38900 4.68976 4.91939 4.94722 5.03968 5.17520 5.18833 5.29640 5.31873 5.40167 5.55069 5.56884 5.70547 5.72848 5.85930 5.94176 6.06116 6.28670 6.33765 6.39212 6.58577 6.61101 6.89383 7.22763 7.28148 7.35158 7.57026 8.18400 8.42889 8.57332 8.79942 8.99777 9.43884 10.94741 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.005331 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.001300 B = 5251.386992 C = 5663.791539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.143 3.857 4 H 0.108 0.892 5 C 0.494 3.506 6 O -0.536 6.536 7 N -0.700 5.700 8 C 0.238 3.762 9 H 0.048 0.952 10 C -0.159 4.159 11 C -0.532 4.532 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.893 5.893 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.262 1.262 19 N -0.605 5.605 20 C 0.106 3.894 21 C -0.130 4.130 22 C -0.154 4.154 23 C 0.524 3.476 24 O -0.512 6.512 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.393 0.607 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 10.179 -7.325 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.036 3.964 4 H 0.125 0.875 5 C 0.277 3.723 6 O -0.413 6.413 7 N -0.350 5.350 8 C 0.134 3.866 9 H 0.065 0.935 10 C -0.218 4.218 11 C -0.570 4.570 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.530 5.530 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.221 1.221 18 H -0.187 1.187 19 N -0.340 5.340 20 C -0.018 4.018 21 C -0.168 4.168 22 C -0.194 4.194 23 C 0.311 3.689 24 O -0.386 6.386 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.227 0.773 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.097 9.872 -7.926 21.274 hybrid contribution 0.570 0.456 0.229 0.765 sum -16.527 10.327 -7.697 20.953 Atomic orbital electron populations 1.21703 0.95067 1.01820 1.01460 1.21903 0.96477 0.94487 1.04773 1.20919 0.93411 0.95289 0.86803 0.87466 1.20638 0.89713 0.79292 0.82682 1.90661 1.64877 1.45873 1.39850 1.46120 1.09434 1.58021 1.21377 1.19077 0.76142 0.93536 0.97811 0.93452 1.22440 1.00106 0.98785 1.00432 1.21037 0.93694 1.12351 1.29954 0.90191 1.24819 0.98241 0.95154 0.94301 1.69866 1.16885 1.29805 1.36473 0.86881 0.80756 0.80170 0.80716 1.20359 1.22141 1.18700 1.47886 1.51072 1.29613 1.05476 1.22090 0.94393 0.86931 0.98347 1.22595 1.02803 0.97244 0.94145 1.22304 1.02860 0.96074 0.98204 1.20671 0.79194 0.85037 0.83965 1.90734 1.36357 1.28106 1.83408 0.92396 0.92737 0.92927 0.89684 0.89904 0.77318 0.94735 0.92858 0.93505 0.92328 0.91158 0.90618 0.89941 0.89454 0.88271 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.80 37.16 0.36 -1.08 16 2 C -0.14 -1.87 5.30 -26.73 -0.14 -2.01 16 3 C 0.14 2.06 2.67 -69.08 -0.18 1.87 16 4 H 0.11 1.19 8.07 -51.93 -0.42 0.78 16 5 C 0.49 9.84 6.82 -10.98 -0.07 9.77 16 6 O -0.54 -12.96 14.54 -9.26 -0.13 -13.09 16 7 N -0.70 -14.39 4.93 -54.93 -0.27 -14.66 16 8 C 0.24 5.90 2.15 -69.09 -0.15 5.76 16 9 H 0.05 1.33 6.64 -51.93 -0.34 0.99 16 10 C -0.16 -3.66 8.96 37.15 0.33 -3.33 16 11 C -0.53 -14.76 9.31 -34.44 -0.32 -15.08 16 12 H 0.08 2.31 7.98 -52.48 -0.42 1.89 16 13 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 14 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 15 Si 0.88 22.48 24.37 -169.99 -4.14 18.34 16 16 H -0.28 -6.74 6.87 56.52 0.39 -6.36 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.26 -6.73 6.53 56.52 0.37 -6.36 16 19 N -0.61 -8.20 2.08 -166.06 -0.35 -8.54 16 20 C 0.11 0.92 7.31 -3.03 -0.02 0.90 16 21 C -0.13 -1.00 7.19 -25.00 -0.18 -1.18 16 22 C -0.15 -1.61 6.86 -26.75 -0.18 -1.80 16 23 C 0.52 8.34 6.68 -10.86 -0.07 8.27 16 24 O -0.51 -10.79 15.34 -9.26 -0.14 -10.93 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 28 H 0.08 1.44 6.62 -51.93 -0.34 1.09 16 29 H 0.08 1.08 7.43 -51.93 -0.39 0.70 16 30 H 0.39 6.98 7.91 -40.82 -0.32 6.66 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -36.26 319.62 -6.39 -42.65 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.22 Total: 3.35 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.73 Total: 4.24 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.16 Total: -49.37 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.28 Total: -24.02 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.26 -6.39 -42.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095404167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.233 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds