Wall clock time and date at job start Mon Mar 30 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 H 1.08993 * 109.47037 * 55.00335 * 3 2 1 5 5 C 1.50697 * 109.46969 * 175.00682 * 3 2 1 6 6 O 1.21283 * 120.00521 * 119.72525 * 5 3 2 7 7 N 1.34784 * 119.99774 * 299.99631 * 5 3 2 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 3 9 9 H 1.09002 * 109.47048 * 324.99733 * 8 7 5 10 10 C 1.52995 * 109.47258 * 85.00288 * 8 7 5 11 11 C 1.50700 * 109.46791 * 205.00137 * 8 7 5 12 12 H 1.08003 * 120.00276 * 359.97438 * 11 8 7 13 13 C 1.37882 * 120.00054 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99842 * 179.97438 * 13 11 8 15 15 Si 1.86794 * 119.99712 * 359.97438 * 13 11 8 16 16 H 1.48502 * 109.47135 * 90.00428 * 15 13 11 17 17 H 1.48504 * 109.47203 * 210.00188 * 15 13 11 18 18 H 1.48496 * 109.47403 * 330.00435 * 15 13 11 19 19 N 1.46507 * 109.46806 * 295.00252 * 3 2 1 20 20 C 1.46757 * 124.34575 * 119.72952 * 19 3 2 21 21 C 1.54661 * 105.38031 * 162.84839 * 20 19 3 22 22 C 1.54625 * 101.68482 * 25.76727 * 21 20 19 23 23 C 1.34417 * 124.35184 * 300.02027 * 19 3 2 24 24 O 1.21282 * 124.94110 * 0.39158 * 23 19 3 25 25 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46346 * 299.99874 * 1 2 3 27 27 H 1.08992 * 109.47274 * 59.99752 * 1 2 3 28 28 H 1.09004 * 109.46761 * 240.00339 * 2 1 3 29 29 H 1.08992 * 109.47274 * 120.00248 * 2 1 3 30 30 H 0.97005 * 119.99846 * 359.72750 * 7 5 3 31 31 H 1.09003 * 109.47025 * 299.99449 * 10 8 7 32 32 H 1.09002 * 109.47544 * 59.99749 * 10 8 7 33 33 H 1.09007 * 109.47281 * 179.97438 * 10 8 7 34 34 H 0.96997 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.08992 * 110.24895 * 281.98137 * 20 19 3 36 36 H 1.09007 * 110.24758 * 43.98073 * 20 19 3 37 37 H 1.08994 * 111.19555 * 267.59157 * 21 20 19 38 38 H 1.09006 * 110.82017 * 143.77294 * 21 20 19 39 39 H 1.09003 * 110.48429 * 216.30703 * 22 21 20 40 40 H 1.09001 * 110.48894 * 93.66186 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 8 4.2219 1.9390 -0.7503 7 7 4.1299 0.8910 1.2030 8 6 5.5902 0.8874 1.3204 9 1 6.0338 0.7648 0.3323 10 6 6.0562 2.2119 1.9280 11 6 6.0198 -0.2515 2.2088 12 1 5.2792 -0.9069 2.6429 13 6 7.3584 -0.4564 2.4684 14 7 7.7332 -1.4500 3.2441 15 14 8.6393 0.6775 1.7181 16 1 8.8906 1.8169 2.6367 17 1 9.9021 -0.0744 1.5052 18 1 8.1437 1.1914 0.4161 19 7 1.6524 2.0975 -1.2519 20 6 0.8029 3.2914 -1.3331 21 6 1.0295 3.8602 -2.7534 22 6 1.4529 2.5942 -3.5338 23 6 2.0245 1.6788 -2.4738 24 8 2.7180 0.7086 -2.6943 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.5861 0.4953 1.9020 31 1 5.7455 3.0357 1.2854 32 1 5.6126 2.3346 2.9161 33 1 7.1428 2.2091 2.0158 34 1 8.6749 -1.5943 3.4263 35 1 -0.2436 3.0199 -1.1951 36 1 1.1060 4.0218 -0.5828 37 1 1.8251 4.6051 -2.7573 38 1 0.1059 4.2760 -3.1562 39 1 2.2126 2.8398 -4.2759 40 1 0.5879 2.1327 -4.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095404167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:49 Heat of formation + Delta-G solvation = -95.590296 kcal Electronic energy + Delta-G solvation = -21596.060304 eV Core-core repulsion = 18409.785608 eV Total energy + Delta-G solvation = -3186.274697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80762 -40.16092 -37.41009 -36.83994 -35.86612 -34.37841 -31.93808 -31.74259 -28.41283 -28.02796 -27.23769 -23.62077 -23.08379 -22.68555 -21.48488 -20.25264 -19.03169 -18.04804 -17.76846 -17.51380 -17.08042 -16.26307 -15.91188 -15.58076 -15.29950 -15.05160 -14.76705 -14.54459 -14.42105 -14.15818 -14.01031 -13.69861 -13.50961 -13.32868 -13.15001 -12.93638 -12.81456 -12.39149 -12.19865 -12.10681 -11.95617 -11.80635 -11.66342 -11.32749 -10.91308 -10.85019 -10.61259 -9.90582 -9.61401 -8.41880 -6.47148 1.21328 1.30957 1.40598 1.60838 1.70999 2.02183 2.22359 2.53470 2.94219 3.47618 3.67270 3.80759 3.87429 3.98551 4.12136 4.23183 4.37931 4.40919 4.47938 4.54657 4.66498 4.70612 4.71796 4.82230 4.89927 4.95330 5.06657 5.10682 5.15808 5.26556 5.27776 5.35816 5.39995 5.60714 5.62196 6.11043 6.25059 6.53690 6.82357 7.15643 7.29348 7.44171 8.73442 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.005331 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.001300 B = 5251.386992 C = 5663.791539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C 0.149 3.851 4 H 0.153 0.847 5 C 0.487 3.513 6 O -0.583 6.583 7 N -0.698 5.698 8 C 0.243 3.757 9 H 0.008 0.992 10 C -0.150 4.150 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.031 3.969 14 N -0.931 5.931 15 Si 0.937 3.063 16 H -0.253 1.253 17 H -0.291 1.291 18 H -0.273 1.273 19 N -0.606 5.606 20 C 0.097 3.903 21 C -0.119 4.119 22 C -0.149 4.149 23 C 0.502 3.498 24 O -0.582 6.582 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.408 0.592 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.271 0.729 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.839 12.691 -7.014 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.173 4.173 3 C 0.042 3.958 4 H 0.170 0.830 5 C 0.272 3.728 6 O -0.462 6.462 7 N -0.349 5.349 8 C 0.138 3.862 9 H 0.026 0.974 10 C -0.208 4.208 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.169 4.169 14 N -0.570 5.570 15 Si 0.765 3.235 16 H -0.179 1.179 17 H -0.218 1.218 18 H -0.198 1.198 19 N -0.339 5.339 20 C -0.024 4.024 21 C -0.156 4.156 22 C -0.189 4.189 23 C 0.292 3.708 24 O -0.461 6.461 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.243 0.757 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.834 12.430 -7.579 24.603 hybrid contribution 1.345 -0.382 0.114 1.403 sum -18.489 12.048 -7.465 23.296 Atomic orbital electron populations 1.21642 0.91670 1.02656 1.03008 1.21862 0.99290 0.93456 1.02703 1.20973 0.89030 0.96754 0.89061 0.82974 1.21716 0.92267 0.77608 0.81168 1.90634 1.66658 1.47789 1.41154 1.45956 1.07889 1.58523 1.22484 1.18706 0.78735 0.93731 0.95024 0.97412 1.22293 0.99636 0.97538 1.01363 1.21241 0.93416 1.12809 1.29567 0.92286 1.25513 1.00200 0.96435 0.94726 1.69963 1.17581 1.31432 1.38022 0.86034 0.78466 0.79207 0.79799 1.17857 1.21800 1.19837 1.48146 1.50752 1.30620 1.04383 1.22527 0.95313 0.85261 0.99296 1.22663 1.04442 0.95469 0.93038 1.22355 1.03289 0.96428 0.96826 1.21744 0.78366 0.84748 0.85969 1.90689 1.39545 1.31202 1.84691 0.92060 0.89894 0.92485 0.93909 0.89951 0.75663 0.93838 0.91003 0.94254 0.91978 0.87547 0.89426 0.90709 0.85305 0.89022 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.80 71.98 0.71 -1.58 16 2 C -0.13 -3.55 5.30 30.60 0.16 -3.38 16 3 C 0.15 4.05 2.67 44.24 0.12 4.17 16 4 H 0.15 2.76 8.07 -2.39 -0.02 2.74 16 5 C 0.49 19.49 6.82 87.65 0.60 20.08 16 6 O -0.58 -28.95 14.54 11.13 0.16 -28.79 16 7 N -0.70 -28.86 4.93 -446.10 -2.20 -31.06 16 8 C 0.24 12.26 2.15 44.24 0.10 12.35 16 9 H 0.01 0.47 6.64 -2.39 -0.02 0.45 16 10 C -0.15 -6.76 8.96 71.98 0.65 -6.11 16 11 C -0.53 -30.12 9.31 25.60 0.24 -29.88 16 12 H 0.06 3.51 7.98 -2.91 -0.02 3.49 16 13 C 0.03 1.82 5.45 84.66 0.46 2.28 16 14 N -0.93 -57.02 13.96 21.45 0.30 -56.73 16 15 Si 0.94 46.73 24.37 68.60 1.67 48.41 16 16 H -0.25 -11.62 6.87 99.48 0.68 -10.93 16 17 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.27 -14.01 6.53 99.48 0.65 -13.36 16 19 N -0.61 -15.25 2.08 -797.87 -1.66 -16.91 16 20 C 0.10 1.28 7.31 86.90 0.64 1.91 16 21 C -0.12 -1.37 7.19 31.71 0.23 -1.14 16 22 C -0.15 -2.85 6.86 30.58 0.21 -2.64 16 23 C 0.50 15.96 6.68 87.90 0.59 16.54 16 24 O -0.58 -25.90 15.34 11.13 0.17 -25.73 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 28 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 29 H 0.08 2.12 7.43 -2.39 -0.02 2.10 16 30 H 0.41 14.34 7.91 -92.70 -0.73 13.60 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.04 1.81 3.27 -2.38 -0.01 1.81 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -84.57 319.62 3.35 -81.22 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.22 Total: 16.98 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.68 Total: 12.60 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.56 Total: -104.69 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: 0.33 Total: -54.52 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.41 kcal Total: -84.57 3.35 -81.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095404167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.370 kcal (2) G-P(sol) polarization free energy of solvation -84.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds