Wall clock time and date at job start Mon Mar 30 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46795 * 2 1 4 4 C 1.50699 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99824 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00424 * 179.97438 * 4 3 2 7 7 C 1.46930 * 120.62745 * 353.63993 * 6 4 3 8 8 C 1.53624 * 108.54534 * 126.36327 * 7 6 4 9 9 C 1.53046 * 109.23939 * 54.85216 * 8 7 6 10 10 C 1.53038 * 109.54090 * 298.51402 * 9 8 7 11 11 C 1.46919 * 120.63178 * 173.91151 * 6 4 3 12 12 H 1.09005 * 109.58710 * 113.66208 * 11 6 4 13 13 C 1.50693 * 109.59043 * 353.38014 * 11 6 4 14 14 O 1.21304 * 119.99791 * 298.57040 * 13 11 6 15 15 N 1.34778 * 120.00432 * 118.56892 * 13 11 6 16 16 C 1.37094 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.07998 * 120.00099 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99840 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00092 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00059 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46868 * 90.00466 * 20 18 16 22 22 H 1.48500 * 109.47294 * 210.00059 * 20 18 16 23 23 H 1.48496 * 109.47253 * 330.00492 * 20 18 16 24 24 H 1.08998 * 109.46735 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47093 * 299.99881 * 1 2 3 26 26 H 1.09001 * 109.47196 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.47093 * 240.00119 * 2 1 3 28 28 H 1.09001 * 109.47196 * 120.00183 * 2 1 3 29 29 H 1.09001 * 109.47398 * 300.00060 * 3 2 1 30 30 H 1.09000 * 109.47203 * 60.00186 * 3 2 1 31 31 H 1.09000 * 109.58341 * 246.19499 * 7 6 4 32 32 H 1.09002 * 109.58657 * 6.62398 * 7 6 4 33 33 H 1.09002 * 109.63286 * 294.86377 * 8 7 6 34 34 H 1.08998 * 109.45826 * 174.73667 * 8 7 6 35 35 H 1.09004 * 109.45761 * 178.49030 * 9 8 7 36 36 H 1.09006 * 109.45726 * 58.53360 * 9 8 7 37 37 H 1.09000 * 109.49841 * 301.41197 * 10 9 8 38 38 H 1.08997 * 109.49563 * 181.31556 * 10 9 8 39 39 H 0.97000 * 119.99962 * 359.97438 * 15 13 11 40 40 H 0.97002 * 119.99782 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2209 2.6098 0.0002 7 6 3.5070 3.8862 -0.1409 8 6 3.9068 4.8013 1.0265 9 6 5.4310 4.9346 1.0637 10 6 6.0597 3.5585 1.2936 11 6 5.6837 2.6296 0.1349 12 1 6.1309 2.9956 -0.7894 13 6 6.1837 1.2371 0.4210 14 8 5.8278 0.6596 1.4266 15 7 7.0263 0.6333 -0.4404 16 6 7.4807 -0.6337 -0.1803 17 1 7.1638 -1.1479 0.7151 18 6 8.3497 -1.2560 -1.0681 19 7 8.7857 -2.4704 -0.8185 20 14 8.8984 -0.3664 -2.6164 21 1 10.1358 0.4039 -2.3324 22 1 9.1678 -1.3584 -3.6881 23 1 7.8278 0.5624 -3.0593 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.7801 4.3550 -1.0863 32 1 2.4319 3.7084 -0.1159 33 1 3.5562 4.3720 1.9651 34 1 3.4588 5.7851 0.8866 35 1 5.7172 5.6048 1.8744 36 1 5.7832 5.3409 0.1155 37 1 5.6889 3.1408 2.2297 38 1 7.1441 3.6576 1.3433 39 1 7.3106 1.0949 -1.2447 40 1 9.3922 -2.9049 -1.4385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106762030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:33 Heat of formation + Delta-G solvation = -100.731527 kcal Electronic energy + Delta-G solvation = -21804.687101 eV Core-core repulsion = 18618.189464 eV Total energy + Delta-G solvation = -3186.497637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78813 -39.46608 -38.30009 -35.95614 -35.29017 -33.82317 -33.71193 -32.27280 -28.99624 -27.51131 -25.89073 -24.44509 -23.08876 -21.50712 -21.35920 -20.62176 -19.47786 -18.24500 -17.43239 -17.02361 -16.79692 -16.53351 -15.60061 -15.44138 -15.21756 -14.97616 -14.90911 -14.68958 -14.50186 -14.16496 -13.92221 -13.76485 -13.40655 -12.99380 -12.77129 -12.64173 -12.47590 -12.40053 -12.11956 -12.00257 -11.92789 -11.67616 -11.66681 -11.55112 -11.45840 -10.46763 -10.24065 -10.16179 -9.55215 -8.38489 -5.95988 1.23629 1.30743 1.39020 1.71963 1.81796 2.22107 2.38842 2.84639 3.21684 3.68051 3.84806 3.94457 3.98394 4.00904 4.08887 4.13529 4.21372 4.32570 4.50166 4.59788 4.64562 4.70011 4.74526 4.88463 4.89307 4.93649 5.12478 5.16780 5.21766 5.24180 5.24927 5.43467 5.48775 5.54651 5.62508 5.99033 6.49478 6.62060 6.95412 7.37533 7.44709 8.10137 8.80956 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.007156 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.239011 B = 3911.916570 C = 5032.764897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.118 4.118 4 C 0.476 3.524 5 O -0.550 6.550 6 N -0.608 5.608 7 C 0.101 3.899 8 C -0.132 4.132 9 C -0.110 4.110 10 C -0.117 4.117 11 C 0.136 3.864 12 H 0.100 0.900 13 C 0.481 3.519 14 O -0.613 6.613 15 N -0.596 5.596 16 C -0.307 4.307 17 H 0.044 0.956 18 C -0.024 4.024 19 N -0.944 5.944 20 Si 0.968 3.032 21 H -0.249 1.249 22 H -0.273 1.273 23 H -0.243 1.243 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.382 0.618 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.682 22.019 -3.876 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.157 4.157 4 C 0.265 3.735 5 O -0.426 6.426 6 N -0.345 5.345 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.147 4.147 10 C -0.156 4.156 11 C 0.029 3.971 12 H 0.118 0.882 13 C 0.270 3.730 14 O -0.497 6.497 15 N -0.238 5.238 16 C -0.437 4.437 17 H 0.062 0.938 18 C -0.221 4.221 19 N -0.586 5.586 20 Si 0.788 3.212 21 H -0.173 1.173 22 H -0.198 1.198 23 H -0.167 1.167 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.503 20.893 -3.242 25.639 hybrid contribution 0.973 -0.875 -0.420 1.374 sum -13.530 20.018 -3.662 24.438 Atomic orbital electron populations 1.21707 0.92309 1.02342 1.03230 1.21274 0.97647 0.95452 1.00846 1.21711 0.88069 0.99505 1.06436 1.21915 0.92501 0.83239 0.75809 1.90937 1.69789 1.33110 1.48785 1.48226 1.04938 1.07754 1.73601 1.22293 0.98060 0.81519 1.00046 1.22034 0.95879 1.01056 0.98074 1.21531 0.95688 0.93641 1.03842 1.21801 1.01529 0.96269 0.95987 1.21063 0.82833 0.92262 1.00971 0.88220 1.20297 0.79980 0.88502 0.84206 1.90498 1.60268 1.67552 1.31398 1.41896 1.44917 1.14774 1.22250 1.18864 1.25125 0.91685 1.07990 0.93830 1.26105 0.96693 0.96768 1.02527 1.69827 1.34475 1.14914 1.39365 0.85332 0.79922 0.78888 0.77076 1.17296 1.19770 1.16733 0.92790 0.91265 0.90591 0.93884 0.94999 0.85422 0.86745 0.88821 0.86914 0.92771 0.86900 0.89826 0.89559 0.93665 0.90650 0.78337 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.11 -3.25 5.22 30.60 0.16 -3.09 16 3 C -0.12 -2.82 4.06 29.85 0.12 -2.69 16 4 C 0.48 17.59 7.39 87.66 0.65 18.24 16 5 O -0.55 -29.00 11.75 20.54 0.24 -28.76 16 6 N -0.61 -18.16 2.97 -798.36 -2.37 -20.53 16 7 C 0.10 1.56 6.38 86.51 0.55 2.11 16 8 C -0.13 -1.78 6.10 30.82 0.19 -1.60 16 9 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 10 C -0.12 -3.36 5.32 30.67 0.16 -3.19 16 11 C 0.14 4.75 3.31 44.23 0.15 4.90 16 12 H 0.10 2.90 7.92 -2.38 -0.02 2.88 16 13 C 0.48 24.94 4.32 87.65 0.38 25.32 16 14 O -0.61 -38.56 14.19 20.48 0.29 -38.27 16 15 N -0.60 -32.52 5.09 -306.98 -1.56 -34.08 16 16 C -0.31 -20.20 10.16 84.04 0.85 -19.35 16 17 H 0.04 3.42 7.39 -2.91 -0.02 3.40 16 18 C -0.02 -1.49 5.50 84.93 0.47 -1.02 16 19 N -0.94 -61.82 13.96 21.66 0.30 -61.52 16 20 Si 0.97 43.25 27.74 68.60 1.90 45.16 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 28 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.13 1.99 7.68 -2.39 -0.02 1.97 16 30 H 0.11 2.13 7.95 -2.39 -0.02 2.11 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 1.14 5.93 -2.39 -0.01 1.12 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 37 H 0.04 1.58 7.93 -2.39 -0.02 1.56 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.38 17.73 5.60 -92.71 -0.52 17.21 16 40 H 0.28 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -96.84 318.16 3.83 -93.01 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.45 Total: 28.85 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.57 Total: 16.14 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.63 Total: -116.12 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: 0.53 Total: -67.03 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.16 kcal Total: -96.84 3.83 -93.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106762030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.722 kcal (2) G-P(sol) polarization free energy of solvation -96.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds