Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 N 1.46500 * 109.47270 * 120.00227 * 2 1 3 5 5 C 1.46502 * 119.99646 * 305.14466 * 4 2 1 6 6 C 1.50694 * 109.46969 * 269.99571 * 5 4 2 7 7 H 1.07999 * 120.00118 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00273 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00565 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99638 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46941 * 89.99482 * 10 8 6 12 12 H 1.48492 * 109.47243 * 209.99506 * 10 8 6 13 13 H 1.48505 * 109.47281 * 330.00068 * 10 8 6 14 14 C 1.34778 * 120.00061 * 125.14410 * 4 2 1 15 15 O 1.21284 * 119.99529 * 185.50274 * 14 4 2 16 16 C 1.50698 * 120.00015 * 5.22503 * 14 4 2 17 17 H 1.08997 * 109.59941 * 25.99590 * 16 14 4 18 18 C 1.53344 * 109.60098 * 146.48870 * 16 14 4 19 19 C 1.53088 * 108.41020 * 187.30388 * 18 16 14 20 20 C 1.50175 * 109.88473 * 311.08167 * 19 18 16 21 21 O 1.21290 * 118.24274 * 197.55936 * 20 19 18 22 22 N 1.33354 * 123.51382 * 17.58516 * 20 19 18 23 23 C 1.45754 * 124.10362 * 357.79462 * 22 20 19 24 24 H 1.08999 * 109.46650 * 299.99621 * 1 2 3 25 25 H 1.08990 * 109.46974 * 60.00154 * 1 2 3 26 26 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47020 * 239.99729 * 2 1 3 28 28 H 1.09006 * 109.46968 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47096 * 299.99665 * 3 2 1 30 30 H 1.08994 * 109.47347 * 60.00245 * 3 2 1 31 31 H 1.09000 * 109.47321 * 30.00058 * 5 4 2 32 32 H 1.09003 * 109.46999 * 150.00200 * 5 4 2 33 33 H 0.96992 * 120.00162 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.67319 * 307.01429 * 18 16 14 35 35 H 1.08998 * 109.67651 * 67.55371 * 18 16 14 36 36 H 1.08998 * 109.40121 * 190.95608 * 19 18 16 37 37 H 1.08997 * 109.40141 * 71.20985 * 19 18 16 38 38 H 0.96996 * 117.95074 * 177.77284 * 22 20 19 39 39 H 1.08999 * 109.30244 * 258.74107 * 23 22 20 40 40 H 1.09000 * 109.13472 * 139.25513 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5740 -0.2592 2.5238 6 6 2.5170 0.7905 3.0526 7 1 3.3625 1.1052 2.4589 8 6 2.2998 1.3501 4.2939 9 7 3.1224 2.2666 4.7552 10 14 0.8369 0.8064 5.3204 11 1 1.2334 -0.3376 6.1802 12 1 0.3848 1.9340 6.1742 13 1 -0.2705 0.3902 4.4227 14 6 2.8765 -1.7229 1.0751 15 8 3.2030 -2.3580 2.0554 16 6 3.4254 -2.0918 -0.2790 17 1 3.4203 -1.2151 -0.9267 18 6 4.8585 -2.6159 -0.1279 19 6 5.4528 -2.8084 -1.5255 20 6 4.4929 -3.5774 -2.3872 21 8 4.9176 -4.0953 -3.3984 22 7 3.1985 -3.7210 -2.1004 23 6 2.5642 -3.1929 -0.8991 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.5692 0.1574 2.4530 32 1 1.5661 -1.1142 3.1999 33 1 2.9698 2.6600 5.6285 34 1 5.4564 -1.8941 0.4287 35 1 4.8469 -3.5690 0.4008 36 1 6.3903 -3.3589 -1.4476 37 1 5.6427 -1.8341 -1.9756 38 1 2.6443 -4.2070 -2.7309 39 1 2.4341 -3.9985 -0.1764 40 1 1.5887 -2.7829 -1.1608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112204195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = -78.833357 kcal Electronic energy + Delta-G solvation = -21642.604648 eV Core-core repulsion = 18457.056587 eV Total energy + Delta-G solvation = -3185.548062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65375 -39.26499 -36.50812 -35.94529 -33.13708 -32.76574 -31.10876 -30.31112 -27.86196 -26.89575 -24.81076 -23.60098 -22.14756 -21.43602 -19.52907 -18.15867 -17.44756 -16.93619 -16.78499 -16.19543 -15.54574 -15.14526 -14.57979 -14.22733 -14.08637 -13.85376 -13.70375 -13.53951 -13.21988 -12.61890 -12.54980 -12.15781 -11.95585 -11.84459 -11.69225 -11.53625 -11.23858 -11.11190 -11.00425 -10.87962 -10.54533 -10.37265 -10.15174 -9.84120 -9.53238 -9.25820 -9.09727 -8.62636 -7.81768 -6.13064 -4.11283 2.53747 2.98294 3.24119 3.25318 3.30774 3.33315 3.63382 4.35146 4.47065 4.56877 4.62549 4.70176 4.99287 5.16494 5.20548 5.22752 5.27064 5.34532 5.39158 5.46771 5.64417 5.70735 5.87442 5.96740 6.01535 6.14802 6.16731 6.23112 6.41837 6.60881 6.70161 6.89113 6.91995 7.15669 7.25815 7.56351 8.08150 8.14675 8.41739 8.81196 8.91433 9.47292 10.99930 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.005372 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.400905 B = 5211.148639 C = 5485.461225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.584 5.584 5 C 0.213 3.787 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.519 3.481 15 O -0.535 6.535 16 C -0.129 4.129 17 H 0.100 0.900 18 C -0.105 4.105 19 C -0.135 4.135 20 C 0.522 3.478 21 O -0.564 6.564 22 N -0.717 5.717 23 C 0.122 3.878 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.400 0.600 39 H 0.076 0.924 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.774 -6.553 -12.698 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.315 5.315 5 C 0.092 3.908 6 C -0.564 4.564 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.304 3.696 15 O -0.412 6.412 16 C -0.151 4.151 17 H 0.118 0.882 18 C -0.143 4.143 19 C -0.175 4.175 20 C 0.309 3.691 21 O -0.444 6.444 22 N -0.369 5.369 23 C -0.002 4.002 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.235 0.765 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.226 -6.890 -12.346 14.502 hybrid contribution -1.020 -0.107 0.518 1.149 sum -4.246 -6.997 -11.828 14.384 Atomic orbital electron populations 1.22166 0.95302 1.01871 1.02734 1.21113 0.94260 0.94373 0.87686 1.22182 1.01577 0.95459 1.02619 1.48048 1.44339 1.30943 1.08213 1.19681 0.95666 0.96044 0.79368 1.21320 1.11933 1.20324 1.02776 0.90498 1.24844 0.96216 0.94674 0.97212 1.69882 1.37077 1.27487 1.19047 0.86908 0.83439 0.78646 0.81034 1.19960 1.21139 1.19117 1.19886 0.79464 0.80798 0.89470 1.90684 1.58842 1.52112 1.39587 1.21706 0.97068 0.99434 0.96863 0.88204 1.21515 0.93637 1.03513 0.95665 1.21692 0.98609 1.01894 0.95269 1.20280 0.82812 0.80026 0.85967 1.90748 1.76429 1.49132 1.28049 1.45440 1.09700 1.57419 1.24321 1.21285 0.95679 0.96490 0.86784 0.91282 0.91901 0.92803 0.90384 0.92583 0.93130 0.89786 0.94923 0.94563 0.92568 0.89587 0.89985 0.87763 0.88002 0.76500 0.90555 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.07 37.16 0.34 -1.68 16 2 C 0.13 1.83 2.99 -67.93 -0.20 1.63 16 3 C -0.16 -2.44 8.61 37.16 0.32 -2.12 16 4 N -0.58 -10.73 2.39 -167.47 -0.40 -11.13 16 5 C 0.21 4.81 3.84 -5.20 -0.02 4.79 16 6 C -0.53 -14.03 8.41 -34.44 -0.29 -14.32 16 7 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 10 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.52 9.34 6.66 -10.99 -0.07 9.27 16 15 O -0.54 -11.93 15.96 5.55 0.09 -11.84 16 16 C -0.13 -1.65 1.77 -91.63 -0.16 -1.81 16 17 H 0.10 1.15 6.14 -51.93 -0.32 0.83 16 18 C -0.11 -1.31 4.85 -26.51 -0.13 -1.44 16 19 C -0.13 -1.46 6.03 -28.09 -0.17 -1.63 16 20 C 0.52 6.54 7.71 -11.87 -0.09 6.45 16 21 O -0.56 -9.09 17.78 5.55 0.10 -8.99 16 22 N -0.72 -7.39 5.45 -61.38 -0.33 -7.72 16 23 C 0.12 1.27 6.40 -4.48 -0.03 1.24 16 24 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.88 5.16 -51.93 -0.27 0.62 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.55 6.93 -51.93 -0.36 1.19 16 31 H 0.03 0.71 5.23 -51.93 -0.27 0.44 16 32 H 0.04 0.89 6.78 -51.93 -0.35 0.54 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 3.52 8.80 -40.82 -0.36 3.16 16 39 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -33.47 318.32 -6.31 -39.78 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.05 Total: 2.55 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.61 Total: 2.31 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.04 Total: -44.70 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.19 Total: -20.83 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.47 -6.31 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.054 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds