Wall clock time and date at job start Mon Mar 30 2020 01:46:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52996 * 109.47064 * 2 1
4 4 N 1.46500 * 109.47270 * 120.00227 * 2 1 3
5 5 C 1.46502 * 119.99646 * 305.14466 * 4 2 1
6 6 C 1.50694 * 109.46969 * 269.99571 * 5 4 2
7 7 H 1.07999 * 120.00118 * 0.02562 * 6 5 4
8 8 C 1.37883 * 120.00273 * 179.97438 * 6 5 4
9 9 N 1.31511 * 120.00565 * 180.02562 * 8 6 5
10 10 Si 1.86800 * 119.99638 * 0.02562 * 8 6 5
11 11 H 1.48504 * 109.46941 * 89.99482 * 10 8 6
12 12 H 1.48492 * 109.47243 * 209.99506 * 10 8 6
13 13 H 1.48505 * 109.47281 * 330.00068 * 10 8 6
14 14 C 1.34778 * 120.00061 * 125.14410 * 4 2 1
15 15 O 1.21284 * 119.99529 * 185.50274 * 14 4 2
16 16 C 1.50698 * 120.00015 * 5.22503 * 14 4 2
17 17 H 1.08997 * 109.59941 * 25.99590 * 16 14 4
18 18 C 1.53344 * 109.60098 * 146.48870 * 16 14 4
19 19 C 1.53088 * 108.41020 * 187.30388 * 18 16 14
20 20 C 1.50175 * 109.88473 * 311.08167 * 19 18 16
21 21 O 1.21290 * 118.24274 * 197.55936 * 20 19 18
22 22 N 1.33354 * 123.51382 * 17.58516 * 20 19 18
23 23 C 1.45754 * 124.10362 * 357.79462 * 22 20 19
24 24 H 1.08999 * 109.46650 * 299.99621 * 1 2 3
25 25 H 1.08990 * 109.46974 * 60.00154 * 1 2 3
26 26 H 1.09001 * 109.46935 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47020 * 239.99729 * 2 1 3
28 28 H 1.09006 * 109.46968 * 180.02562 * 3 2 1
29 29 H 1.09000 * 109.47096 * 299.99665 * 3 2 1
30 30 H 1.08994 * 109.47347 * 60.00245 * 3 2 1
31 31 H 1.09000 * 109.47321 * 30.00058 * 5 4 2
32 32 H 1.09003 * 109.46999 * 150.00200 * 5 4 2
33 33 H 0.96992 * 120.00162 * 180.02562 * 9 8 6
34 34 H 1.09004 * 109.67319 * 307.01429 * 18 16 14
35 35 H 1.08998 * 109.67651 * 67.55371 * 18 16 14
36 36 H 1.08998 * 109.40121 * 190.95608 * 19 18 16
37 37 H 1.08997 * 109.40141 * 71.20985 * 19 18 16
38 38 H 0.96996 * 117.95074 * 177.77284 * 22 20 19
39 39 H 1.08999 * 109.30244 * 258.74107 * 23 22 20
40 40 H 1.09000 * 109.13472 * 139.25513 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.5740 -0.2592 2.5238
6 6 2.5170 0.7905 3.0526
7 1 3.3625 1.1052 2.4589
8 6 2.2998 1.3501 4.2939
9 7 3.1224 2.2666 4.7552
10 14 0.8369 0.8064 5.3204
11 1 1.2334 -0.3376 6.1802
12 1 0.3848 1.9340 6.1742
13 1 -0.2705 0.3902 4.4227
14 6 2.8765 -1.7229 1.0751
15 8 3.2030 -2.3580 2.0554
16 6 3.4254 -2.0918 -0.2790
17 1 3.4203 -1.2151 -0.9267
18 6 4.8585 -2.6159 -0.1279
19 6 5.4528 -2.8084 -1.5255
20 6 4.4929 -3.5774 -2.3872
21 8 4.9176 -4.0953 -3.3984
22 7 3.1985 -3.7210 -2.1004
23 6 2.5642 -3.1929 -0.8991
24 1 -0.3632 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 1.8934 -0.5139 -0.8900
28 1 3.1301 1.4424 -0.0005
29 1 1.6767 1.9563 -0.8900
30 1 1.6768 1.9563 0.8899
31 1 0.5692 0.1574 2.4530
32 1 1.5661 -1.1142 3.1999
33 1 2.9698 2.6600 5.6285
34 1 5.4564 -1.8941 0.4287
35 1 4.8469 -3.5690 0.4008
36 1 6.3903 -3.3589 -1.4476
37 1 5.6427 -1.8341 -1.9756
38 1 2.6443 -4.2070 -2.7309
39 1 2.4341 -3.9985 -0.1764
40 1 1.5887 -2.7829 -1.1608
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000112204195.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:46:57
Heat of formation + Delta-G solvation = -78.833357 kcal
Electronic energy + Delta-G solvation = -21642.604648 eV
Core-core repulsion = 18457.056587 eV
Total energy + Delta-G solvation = -3185.548062 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.65375 -39.26499 -36.50812 -35.94529 -33.13708 -32.76574 -31.10876 -30.31112
-27.86196 -26.89575 -24.81076 -23.60098 -22.14756 -21.43602 -19.52907 -18.15867
-17.44756 -16.93619 -16.78499 -16.19543 -15.54574 -15.14526 -14.57979 -14.22733
-14.08637 -13.85376 -13.70375 -13.53951 -13.21988 -12.61890 -12.54980 -12.15781
-11.95585 -11.84459 -11.69225 -11.53625 -11.23858 -11.11190 -11.00425 -10.87962
-10.54533 -10.37265 -10.15174 -9.84120 -9.53238 -9.25820 -9.09727 -8.62636
-7.81768 -6.13064 -4.11283 2.53747 2.98294 3.24119 3.25318 3.30774
3.33315 3.63382 4.35146 4.47065 4.56877 4.62549 4.70176 4.99287
5.16494 5.20548 5.22752 5.27064 5.34532 5.39158 5.46771 5.64417
5.70735 5.87442 5.96740 6.01535 6.14802 6.16731 6.23112 6.41837
6.60881 6.70161 6.89113 6.91995 7.15669 7.25815 7.56351 8.08150
8.14675 8.41739 8.81196 8.91433 9.47292 10.99930
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.027326 B = 0.005372 C = 0.005103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.400905 B = 5211.148639 C = 5485.461225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.130 3.870
3 C -0.160 4.160
4 N -0.584 5.584
5 C 0.213 3.787
6 C -0.525 4.525
7 H 0.077 0.923
8 C 0.073 3.927
9 N -0.896 5.896
10 Si 0.873 3.127
11 H -0.274 1.274
12 H -0.286 1.286
13 H -0.266 1.266
14 C 0.519 3.481
15 O -0.535 6.535
16 C -0.129 4.129
17 H 0.100 0.900
18 C -0.105 4.105
19 C -0.135 4.135
20 C 0.522 3.478
21 O -0.564 6.564
22 N -0.717 5.717
23 C 0.122 3.878
24 H 0.068 0.932
25 H 0.062 0.938
26 H 0.053 0.947
27 H 0.078 0.922
28 H 0.055 0.945
29 H 0.050 0.950
30 H 0.083 0.917
31 H 0.033 0.967
32 H 0.036 0.964
33 H 0.264 0.736
34 H 0.085 0.915
35 H 0.081 0.919
36 H 0.104 0.896
37 H 0.102 0.898
38 H 0.400 0.600
39 H 0.076 0.924
40 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.774 -6.553 -12.698 14.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.026 3.974
3 C -0.218 4.218
4 N -0.315 5.315
5 C 0.092 3.908
6 C -0.564 4.564
7 H 0.095 0.905
8 C -0.129 4.129
9 N -0.535 5.535
10 Si 0.700 3.300
11 H -0.200 1.200
12 H -0.211 1.211
13 H -0.191 1.191
14 C 0.304 3.696
15 O -0.412 6.412
16 C -0.151 4.151
17 H 0.118 0.882
18 C -0.143 4.143
19 C -0.175 4.175
20 C 0.309 3.691
21 O -0.444 6.444
22 N -0.369 5.369
23 C -0.002 4.002
24 H 0.087 0.913
25 H 0.081 0.919
26 H 0.072 0.928
27 H 0.096 0.904
28 H 0.074 0.926
29 H 0.069 0.931
30 H 0.102 0.898
31 H 0.051 0.949
32 H 0.054 0.946
33 H 0.074 0.926
34 H 0.104 0.896
35 H 0.100 0.900
36 H 0.122 0.878
37 H 0.120 0.880
38 H 0.235 0.765
39 H 0.094 0.906
40 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.226 -6.890 -12.346 14.502
hybrid contribution -1.020 -0.107 0.518 1.149
sum -4.246 -6.997 -11.828 14.384
Atomic orbital electron populations
1.22166 0.95302 1.01871 1.02734 1.21113 0.94260 0.94373 0.87686
1.22182 1.01577 0.95459 1.02619 1.48048 1.44339 1.30943 1.08213
1.19681 0.95666 0.96044 0.79368 1.21320 1.11933 1.20324 1.02776
0.90498 1.24844 0.96216 0.94674 0.97212 1.69882 1.37077 1.27487
1.19047 0.86908 0.83439 0.78646 0.81034 1.19960 1.21139 1.19117
1.19886 0.79464 0.80798 0.89470 1.90684 1.58842 1.52112 1.39587
1.21706 0.97068 0.99434 0.96863 0.88204 1.21515 0.93637 1.03513
0.95665 1.21692 0.98609 1.01894 0.95269 1.20280 0.82812 0.80026
0.85967 1.90748 1.76429 1.49132 1.28049 1.45440 1.09700 1.57419
1.24321 1.21285 0.95679 0.96490 0.86784 0.91282 0.91901 0.92803
0.90384 0.92583 0.93130 0.89786 0.94923 0.94563 0.92568 0.89587
0.89985 0.87763 0.88002 0.76500 0.90555 0.90036
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.02 9.07 37.16 0.34 -1.68 16
2 C 0.13 1.83 2.99 -67.93 -0.20 1.63 16
3 C -0.16 -2.44 8.61 37.16 0.32 -2.12 16
4 N -0.58 -10.73 2.39 -167.47 -0.40 -11.13 16
5 C 0.21 4.81 3.84 -5.20 -0.02 4.79 16
6 C -0.53 -14.03 8.41 -34.44 -0.29 -14.32 16
7 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16
8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
9 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16
10 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16
11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
13 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16
14 C 0.52 9.34 6.66 -10.99 -0.07 9.27 16
15 O -0.54 -11.93 15.96 5.55 0.09 -11.84 16
16 C -0.13 -1.65 1.77 -91.63 -0.16 -1.81 16
17 H 0.10 1.15 6.14 -51.93 -0.32 0.83 16
18 C -0.11 -1.31 4.85 -26.51 -0.13 -1.44 16
19 C -0.13 -1.46 6.03 -28.09 -0.17 -1.63 16
20 C 0.52 6.54 7.71 -11.87 -0.09 6.45 16
21 O -0.56 -9.09 17.78 5.55 0.10 -8.99 16
22 N -0.72 -7.39 5.45 -61.38 -0.33 -7.72 16
23 C 0.12 1.27 6.40 -4.48 -0.03 1.24 16
24 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16
25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
27 H 0.08 0.88 5.16 -51.93 -0.27 0.62 16
28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.08 1.55 6.93 -51.93 -0.36 1.19 16
31 H 0.03 0.71 5.23 -51.93 -0.27 0.44 16
32 H 0.04 0.89 6.78 -51.93 -0.35 0.54 16
33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16
36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.40 3.52 8.80 -40.82 -0.36 3.16 16
39 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16
40 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16
LS Contribution 318.32 15.07 4.80 4.80
Total: -1.00 -33.47 318.32 -6.31 -39.78
By element:
Atomic # 1 Polarization: 8.61 SS G_CDS: -6.05 Total: 2.55 kcal
Atomic # 6 Polarization: 2.92 SS G_CDS: -0.61 Total: 2.31 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: 0.04 Total: -44.70 kcal
Atomic # 8 Polarization: -21.02 SS G_CDS: 0.19 Total: -20.83 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -33.47 -6.31 -39.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112204195.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.054 kcal
(2) G-P(sol) polarization free energy of solvation -33.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.527 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds