Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 N 1.46500 * 109.47270 * 120.00227 * 2 1 3 5 5 C 1.46502 * 119.99646 * 305.14466 * 4 2 1 6 6 C 1.50694 * 109.46969 * 269.99571 * 5 4 2 7 7 H 1.07999 * 120.00118 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00273 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00565 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99638 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46941 * 89.99482 * 10 8 6 12 12 H 1.48492 * 109.47243 * 209.99506 * 10 8 6 13 13 H 1.48505 * 109.47281 * 330.00068 * 10 8 6 14 14 C 1.34778 * 120.00061 * 125.14410 * 4 2 1 15 15 O 1.21284 * 119.99529 * 185.50274 * 14 4 2 16 16 C 1.50698 * 120.00015 * 5.22503 * 14 4 2 17 17 H 1.08997 * 109.59941 * 25.99590 * 16 14 4 18 18 C 1.53344 * 109.60098 * 146.48870 * 16 14 4 19 19 C 1.53088 * 108.41020 * 187.30388 * 18 16 14 20 20 C 1.50175 * 109.88473 * 311.08167 * 19 18 16 21 21 O 1.21290 * 118.24274 * 197.55936 * 20 19 18 22 22 N 1.33354 * 123.51382 * 17.58516 * 20 19 18 23 23 C 1.45754 * 124.10362 * 357.79462 * 22 20 19 24 24 H 1.08999 * 109.46650 * 299.99621 * 1 2 3 25 25 H 1.08990 * 109.46974 * 60.00154 * 1 2 3 26 26 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47020 * 239.99729 * 2 1 3 28 28 H 1.09006 * 109.46968 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47096 * 299.99665 * 3 2 1 30 30 H 1.08994 * 109.47347 * 60.00245 * 3 2 1 31 31 H 1.09000 * 109.47321 * 30.00058 * 5 4 2 32 32 H 1.09003 * 109.46999 * 150.00200 * 5 4 2 33 33 H 0.96992 * 120.00162 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.67319 * 307.01429 * 18 16 14 35 35 H 1.08998 * 109.67651 * 67.55371 * 18 16 14 36 36 H 1.08998 * 109.40121 * 190.95608 * 19 18 16 37 37 H 1.08997 * 109.40141 * 71.20985 * 19 18 16 38 38 H 0.96996 * 117.95074 * 177.77284 * 22 20 19 39 39 H 1.08999 * 109.30244 * 258.74107 * 23 22 20 40 40 H 1.09000 * 109.13472 * 139.25513 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5740 -0.2592 2.5238 6 6 2.5170 0.7905 3.0526 7 1 3.3625 1.1052 2.4589 8 6 2.2998 1.3501 4.2939 9 7 3.1224 2.2666 4.7552 10 14 0.8369 0.8064 5.3204 11 1 1.2334 -0.3376 6.1802 12 1 0.3848 1.9340 6.1742 13 1 -0.2705 0.3902 4.4227 14 6 2.8765 -1.7229 1.0751 15 8 3.2030 -2.3580 2.0554 16 6 3.4254 -2.0918 -0.2790 17 1 3.4203 -1.2151 -0.9267 18 6 4.8585 -2.6159 -0.1279 19 6 5.4528 -2.8084 -1.5255 20 6 4.4929 -3.5774 -2.3872 21 8 4.9176 -4.0953 -3.3984 22 7 3.1985 -3.7210 -2.1004 23 6 2.5642 -3.1929 -0.8991 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.5692 0.1574 2.4530 32 1 1.5661 -1.1142 3.1999 33 1 2.9698 2.6600 5.6285 34 1 5.4564 -1.8941 0.4287 35 1 4.8469 -3.5690 0.4008 36 1 6.3903 -3.3589 -1.4476 37 1 5.6427 -1.8341 -1.9756 38 1 2.6443 -4.2070 -2.7309 39 1 2.4341 -3.9985 -0.1764 40 1 1.5887 -2.7829 -1.1608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112204195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = -103.629259 kcal Electronic energy + Delta-G solvation = -21643.679879 eV Core-core repulsion = 18457.056587 eV Total energy + Delta-G solvation = -3186.623293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77616 -40.53251 -37.78376 -37.19497 -34.84741 -34.03537 -32.56630 -31.51233 -29.53924 -28.00629 -25.80451 -25.02379 -23.62800 -22.66855 -20.64404 -19.34405 -19.02314 -18.66861 -17.89624 -17.21614 -16.90964 -16.43839 -16.01219 -15.70309 -15.16123 -15.08787 -14.86872 -14.70261 -14.52365 -14.29620 -13.82856 -13.58839 -13.31705 -13.20020 -12.90772 -12.78188 -12.61103 -12.35261 -12.28219 -12.18279 -12.07411 -11.88395 -11.65285 -11.45403 -10.86588 -10.77239 -10.60053 -10.15382 -9.39550 -8.28495 -6.30681 1.33945 1.37663 1.44825 1.56153 1.69798 2.12904 2.33633 2.40339 3.06057 3.41000 3.57642 3.62487 3.71418 3.91525 4.16268 4.21346 4.29941 4.37432 4.43281 4.48896 4.70575 4.77952 4.85305 4.90376 4.94006 4.97538 4.99822 5.07512 5.11719 5.15435 5.43573 5.51175 5.61471 5.70694 5.79994 6.23677 6.29875 6.70278 6.74063 7.16427 7.26568 7.41918 8.87868 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.005372 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.400905 B = 5211.148639 C = 5485.461225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.157 4.157 4 N -0.589 5.589 5 C 0.222 3.778 6 C -0.519 4.519 7 H 0.037 0.963 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.937 3.063 11 H -0.279 1.279 12 H -0.280 1.280 13 H -0.238 1.238 14 C 0.513 3.487 15 O -0.587 6.587 16 C -0.119 4.119 17 H 0.121 0.879 18 C -0.103 4.103 19 C -0.126 4.126 20 C 0.521 3.479 21 O -0.602 6.602 22 N -0.703 5.703 23 C 0.129 3.871 24 H 0.044 0.956 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.410 0.590 39 H 0.071 0.929 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -7.343 -14.848 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 C -0.215 4.215 4 N -0.319 5.319 5 C 0.100 3.900 6 C -0.558 4.558 7 H 0.055 0.945 8 C -0.186 4.186 9 N -0.587 5.587 10 Si 0.761 3.239 11 H -0.205 1.205 12 H -0.206 1.206 13 H -0.161 1.161 14 C 0.300 3.700 15 O -0.467 6.467 16 C -0.141 4.141 17 H 0.139 0.861 18 C -0.141 4.141 19 C -0.165 4.165 20 C 0.309 3.691 21 O -0.484 6.484 22 N -0.354 5.354 23 C 0.004 3.996 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.384 -7.676 -14.542 17.302 hybrid contribution -0.286 0.177 1.157 1.205 sum -5.670 -7.498 -13.385 16.357 Atomic orbital electron populations 1.22155 0.93352 1.03004 1.03183 1.21503 0.95846 0.93424 0.87091 1.22127 1.00363 0.96512 1.02455 1.48144 1.44512 1.31287 1.08005 1.19303 0.95397 0.93841 0.81503 1.21535 1.11224 1.20700 1.02295 0.94504 1.25743 0.99342 0.94791 0.98732 1.70036 1.39536 1.29404 1.19734 0.85873 0.80623 0.77952 0.79485 1.20505 1.20595 1.16086 1.20756 0.78389 0.79881 0.90939 1.90658 1.60318 1.53860 1.41872 1.21664 0.97200 1.01232 0.93956 0.86115 1.21453 0.93559 1.02487 0.96600 1.21651 0.98462 1.02810 0.93597 1.20476 0.83449 0.79665 0.85491 1.90743 1.77139 1.50859 1.29705 1.45304 1.09183 1.56699 1.24196 1.21283 0.96226 0.95549 0.86499 0.93680 0.88611 0.91324 0.86460 0.94459 0.89330 0.93815 0.93200 0.96511 0.92576 0.91097 0.91086 0.86939 0.86222 0.75224 0.91035 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.07 71.98 0.65 -2.66 16 2 C 0.12 3.12 2.99 44.99 0.13 3.26 16 3 C -0.16 -4.53 8.61 71.98 0.62 -3.91 16 4 N -0.59 -21.01 2.39 -802.14 -1.92 -22.92 16 5 C 0.22 10.01 3.84 85.63 0.33 10.34 16 6 C -0.52 -28.62 8.41 25.60 0.22 -28.40 16 7 H 0.04 2.27 7.83 -2.91 -0.02 2.24 16 8 C 0.01 0.66 5.47 84.66 0.46 1.12 16 9 N -0.95 -58.29 13.96 21.45 0.30 -58.00 16 10 Si 0.94 43.15 27.47 68.60 1.88 45.03 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 14 C 0.51 18.06 6.66 87.66 0.58 18.64 16 15 O -0.59 -26.57 15.96 -3.04 -0.05 -26.61 16 16 C -0.12 -2.78 1.77 -11.45 -0.02 -2.80 16 17 H 0.12 2.33 6.14 -2.39 -0.01 2.31 16 18 C -0.10 -2.46 4.85 30.74 0.15 -2.31 16 19 C -0.13 -2.45 6.03 29.71 0.18 -2.27 16 20 C 0.52 11.78 7.71 87.71 0.68 12.45 16 21 O -0.60 -18.27 17.78 -3.06 -0.05 -18.33 16 22 N -0.70 -12.13 5.45 -467.30 -2.55 -14.68 16 23 C 0.13 2.22 6.40 86.50 0.55 2.78 16 24 H 0.04 1.16 6.52 -2.39 -0.02 1.15 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.12 2.07 5.16 -2.39 -0.01 2.06 16 28 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.61 6.93 -2.39 -0.02 1.60 16 31 H 0.05 2.10 5.23 -2.39 -0.01 2.08 16 32 H 0.02 0.83 6.78 -2.39 -0.02 0.81 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 5.76 8.80 -92.71 -0.82 4.95 16 39 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 40 H 0.11 1.32 7.87 -2.39 -0.02 1.30 16 Total: -1.00 -77.16 318.32 2.33 -74.83 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.17 Total: 14.46 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.54 Total: 6.23 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -4.16 Total: -95.60 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.10 Total: -44.94 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -77.16 2.33 -74.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.802 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds