Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47089 * 2 1 4 4 H 1.08999 * 109.47701 * 58.33466 * 3 2 1 5 5 C 1.50698 * 109.47169 * 178.33528 * 3 2 1 6 6 O 1.21300 * 119.99969 * 110.57857 * 5 3 2 7 7 N 1.34775 * 120.00062 * 290.57186 * 5 3 2 8 8 C 1.37095 * 120.00129 * 3.67184 * 7 5 3 9 9 H 1.08009 * 119.99835 * 3.14125 * 8 7 5 10 10 C 1.38952 * 120.00350 * 183.14059 * 8 7 5 11 11 N 1.31408 * 119.99537 * 21.78741 * 10 8 7 12 12 Si 1.86806 * 119.99889 * 201.79310 * 10 8 7 13 13 H 1.48506 * 109.46999 * 60.00072 * 12 10 8 14 14 H 1.48501 * 109.46694 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46871 * 299.99918 * 12 10 8 16 16 C 1.46500 * 120.00087 * 183.66977 * 7 5 3 17 17 C 1.53002 * 109.47356 * 92.58012 * 16 7 5 18 18 N 1.46502 * 109.47015 * 298.33408 * 3 2 1 19 19 C 1.46762 * 124.35073 * 119.99966 * 18 3 2 20 20 C 1.54477 * 105.47566 * 197.01784 * 19 18 3 21 21 C 1.54631 * 101.76581 * 334.58276 * 20 19 18 22 22 C 1.34421 * 124.34939 * 299.70130 * 18 3 2 23 23 O 1.21280 * 124.94292 * 359.56568 * 22 18 3 24 24 H 1.08998 * 109.47539 * 299.99986 * 1 2 3 25 25 H 1.09002 * 109.47538 * 60.00251 * 1 2 3 26 26 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47152 * 239.99638 * 2 1 3 28 28 H 1.09001 * 109.47215 * 119.99310 * 2 1 3 29 29 H 0.97005 * 119.99637 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47036 * 212.58454 * 16 7 5 31 31 H 1.08999 * 109.47142 * 332.57749 * 16 7 5 32 32 H 1.09000 * 109.47025 * 293.13141 * 17 16 7 33 33 H 1.08995 * 109.46868 * 53.12475 * 17 16 7 34 34 H 1.08987 * 109.47228 * 173.12847 * 17 16 7 35 35 H 1.08999 * 110.24482 * 316.02012 * 19 18 3 36 36 H 1.09001 * 110.24483 * 78.01669 * 19 18 3 37 37 H 1.09002 * 110.97416 * 92.70157 * 20 19 18 38 38 H 1.09000 * 110.97502 * 216.46765 * 20 19 18 39 39 H 1.08999 * 110.48842 * 143.47026 * 21 20 19 40 40 H 1.08994 * 110.48890 * 265.98844 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6525 1.9649 0.8746 5 6 3.5463 1.4427 0.0413 6 8 4.1796 1.8025 -0.9287 7 7 4.1900 1.0433 1.1560 8 6 3.4772 0.5657 2.2253 9 1 2.4043 0.4619 2.1561 10 6 4.1349 0.2153 3.3980 11 7 5.3217 0.7149 3.6601 12 14 3.3319 -0.9661 4.6019 13 1 3.0826 -2.2659 3.9282 14 1 4.2321 -1.1762 5.7641 15 1 2.0432 -0.3959 5.0699 16 6 5.6514 1.1193 1.2251 17 6 6.0639 2.4571 1.8426 18 7 1.5846 2.1214 -1.2158 19 6 0.7372 3.3196 -1.2272 20 6 0.1695 3.4092 -2.6611 21 6 1.2442 2.6506 -3.4738 22 6 1.8941 1.7302 -2.4640 23 8 2.5907 0.7768 -2.7406 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 5.7810 0.4699 4.4787 30 1 6.0290 0.3030 1.8408 31 1 6.0673 1.0391 0.2207 32 1 5.7935 3.2681 1.1664 33 1 5.5505 2.5914 2.7946 34 1 7.1413 2.4647 2.0065 35 1 -0.0736 3.2150 -0.5063 36 1 1.3321 4.2045 -1.0011 37 1 -0.7967 2.9094 -2.7301 38 1 0.0944 4.4467 -2.9868 39 1 0.7810 2.0755 -4.2754 40 1 1.9777 3.3471 -3.8798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161559974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -49.799623 kcal Electronic energy + Delta-G solvation = -22286.041923 eV Core-core repulsion = 19101.752858 eV Total energy + Delta-G solvation = -3184.289064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17797 -38.25540 -35.77894 -35.00023 -34.22528 -31.48537 -30.59755 -29.75546 -27.23415 -26.42221 -24.79376 -22.13234 -21.58845 -21.55267 -19.46134 -18.46501 -17.13974 -16.64285 -15.73704 -15.60127 -14.87075 -14.34511 -14.14588 -13.90662 -13.59892 -13.26834 -13.07963 -12.79609 -12.60000 -12.40329 -12.32132 -12.05057 -11.85949 -11.35899 -11.22054 -11.15386 -11.05742 -10.95911 -10.83271 -10.58426 -10.47838 -10.31537 -10.00636 -9.63947 -9.01120 -8.81759 -8.62002 -7.85296 -7.74221 -6.34509 -3.84012 3.09092 3.19405 3.20744 3.27306 3.48421 3.94546 4.07012 4.64138 4.67222 4.88910 4.93970 5.03550 5.30557 5.53673 5.60145 5.63099 5.73356 5.76970 5.77229 5.86955 5.99290 6.09618 6.22635 6.26900 6.40541 6.54347 6.65298 6.82351 6.85073 6.93257 7.07864 7.16152 7.35179 7.49349 7.76055 7.79417 7.86719 8.46001 8.87173 9.08835 9.59088 10.00693 10.59942 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.007043 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.849598 B = 3974.571891 C = 4629.635579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.162 3.838 4 H 0.099 0.901 5 C 0.445 3.555 6 O -0.588 6.588 7 N -0.441 5.441 8 C -0.340 4.340 9 H 0.105 0.895 10 C 0.036 3.964 11 N -0.855 5.855 12 Si 0.913 3.087 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.136 3.864 17 C -0.132 4.132 18 N -0.602 5.602 19 C 0.105 3.895 20 C -0.129 4.129 21 C -0.156 4.156 22 C 0.524 3.476 23 O -0.513 6.513 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.267 0.733 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 3.890 -4.409 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.056 3.944 4 H 0.116 0.884 5 C 0.232 3.768 6 O -0.473 6.473 7 N -0.160 5.160 8 C -0.467 4.467 9 H 0.122 0.878 10 C -0.168 4.168 11 N -0.494 5.494 12 Si 0.740 3.260 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.013 3.987 17 C -0.190 4.190 18 N -0.337 5.337 19 C -0.019 4.019 20 C -0.167 4.167 21 C -0.196 4.196 22 C 0.310 3.690 23 O -0.387 6.387 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.620 3.499 -4.784 11.299 hybrid contribution -0.303 -0.386 0.920 1.042 sum -9.923 3.113 -3.864 11.094 Atomic orbital electron populations 1.21698 0.96162 1.01015 1.01040 1.21985 0.95357 0.95703 1.04980 1.20625 0.93937 0.93972 0.85899 0.88354 1.20080 0.89089 0.83398 0.84233 1.90557 1.67695 1.53331 1.35723 1.43769 1.05915 1.54180 1.12182 1.19773 0.93223 1.41704 0.92002 0.87754 1.25181 0.96344 0.97639 0.97666 1.70254 1.14831 1.39137 1.25143 0.86216 0.78978 0.81337 0.79512 1.19836 1.20890 1.19889 1.21231 0.80240 0.99536 0.97659 1.21980 0.99092 0.96005 1.01959 1.47942 1.51130 1.28594 1.06033 1.22000 0.93944 0.88382 0.97582 1.22546 0.98373 1.01411 0.94363 1.22318 0.99214 0.99607 0.98489 1.20492 0.79949 0.84835 0.83684 1.90682 1.36988 1.29136 1.81919 0.93034 0.93370 0.93083 0.90807 0.88314 0.92203 0.88898 0.94383 0.96635 0.89315 0.94827 0.90756 0.91593 0.90345 0.89689 0.88851 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.77 37.15 0.36 -1.74 16 2 C -0.14 -2.70 4.94 -26.74 -0.13 -2.84 16 3 C 0.16 3.29 1.87 -69.08 -0.13 3.16 16 4 H 0.10 1.88 7.53 -51.93 -0.39 1.49 16 5 C 0.45 11.26 6.80 -10.99 -0.07 11.19 16 6 O -0.59 -16.70 13.91 -14.07 -0.20 -16.90 16 7 N -0.44 -11.34 2.63 -114.81 -0.30 -11.64 16 8 C -0.34 -8.34 8.31 -14.93 -0.12 -8.47 16 9 H 0.10 2.37 4.80 -52.48 -0.25 2.12 16 10 C 0.04 0.88 5.07 -17.47 -0.09 0.79 16 11 N -0.86 -21.32 7.91 55.50 0.44 -20.88 16 12 Si 0.91 18.85 29.61 -169.99 -5.03 13.82 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 C 0.14 3.49 5.43 -4.04 -0.02 3.47 16 17 C -0.13 -3.17 9.44 37.16 0.35 -2.82 16 18 N -0.60 -10.85 2.00 -166.16 -0.33 -11.18 16 19 C 0.10 1.34 7.30 -3.12 -0.02 1.32 16 20 C -0.13 -1.29 7.18 -25.10 -0.18 -1.47 16 21 C -0.16 -2.08 6.86 -26.74 -0.18 -2.26 16 22 C 0.52 10.19 6.70 -10.85 -0.07 10.11 16 23 O -0.51 -12.48 15.04 -14.05 -0.21 -12.69 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.68 7.65 -51.93 -0.40 0.29 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.60 6.77 -51.93 -0.35 1.24 16 28 H 0.10 1.98 5.48 -51.93 -0.28 1.69 16 29 H 0.27 6.36 8.31 -40.82 -0.34 6.03 16 30 H 0.09 2.44 5.98 -51.93 -0.31 2.13 16 31 H 0.04 1.01 7.30 -51.93 -0.38 0.63 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 2.25 6.25 -51.93 -0.32 1.93 16 34 H 0.03 0.73 8.14 -51.94 -0.42 0.30 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -31.81 313.57 -7.28 -39.09 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.05 Total: 5.21 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.32 Total: 10.44 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.19 Total: -43.70 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.41 Total: -29.59 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.81 -7.28 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161559974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.709 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds