Wall clock time and date at job start Mon Mar 30 2020 01:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47089 * 2 1 4 4 H 1.08999 * 109.47701 * 58.33466 * 3 2 1 5 5 C 1.50698 * 109.47169 * 178.33528 * 3 2 1 6 6 O 1.21300 * 119.99969 * 110.57857 * 5 3 2 7 7 N 1.34775 * 120.00062 * 290.57186 * 5 3 2 8 8 C 1.37095 * 120.00129 * 3.67184 * 7 5 3 9 9 H 1.08009 * 119.99835 * 3.14125 * 8 7 5 10 10 C 1.38952 * 120.00350 * 183.14059 * 8 7 5 11 11 N 1.31408 * 119.99537 * 21.78741 * 10 8 7 12 12 Si 1.86806 * 119.99889 * 201.79310 * 10 8 7 13 13 H 1.48506 * 109.46999 * 60.00072 * 12 10 8 14 14 H 1.48501 * 109.46694 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46871 * 299.99918 * 12 10 8 16 16 C 1.46500 * 120.00087 * 183.66977 * 7 5 3 17 17 C 1.53002 * 109.47356 * 92.58012 * 16 7 5 18 18 N 1.46502 * 109.47015 * 298.33408 * 3 2 1 19 19 C 1.46762 * 124.35073 * 119.99966 * 18 3 2 20 20 C 1.54477 * 105.47566 * 197.01784 * 19 18 3 21 21 C 1.54631 * 101.76581 * 334.58276 * 20 19 18 22 22 C 1.34421 * 124.34939 * 299.70130 * 18 3 2 23 23 O 1.21280 * 124.94292 * 359.56568 * 22 18 3 24 24 H 1.08998 * 109.47539 * 299.99986 * 1 2 3 25 25 H 1.09002 * 109.47538 * 60.00251 * 1 2 3 26 26 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47152 * 239.99638 * 2 1 3 28 28 H 1.09001 * 109.47215 * 119.99310 * 2 1 3 29 29 H 0.97005 * 119.99637 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47036 * 212.58454 * 16 7 5 31 31 H 1.08999 * 109.47142 * 332.57749 * 16 7 5 32 32 H 1.09000 * 109.47025 * 293.13141 * 17 16 7 33 33 H 1.08995 * 109.46868 * 53.12475 * 17 16 7 34 34 H 1.08987 * 109.47228 * 173.12847 * 17 16 7 35 35 H 1.08999 * 110.24482 * 316.02012 * 19 18 3 36 36 H 1.09001 * 110.24483 * 78.01669 * 19 18 3 37 37 H 1.09002 * 110.97416 * 92.70157 * 20 19 18 38 38 H 1.09000 * 110.97502 * 216.46765 * 20 19 18 39 39 H 1.08999 * 110.48842 * 143.47026 * 21 20 19 40 40 H 1.08994 * 110.48890 * 265.98844 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6525 1.9649 0.8746 5 6 3.5463 1.4427 0.0413 6 8 4.1796 1.8025 -0.9287 7 7 4.1900 1.0433 1.1560 8 6 3.4772 0.5657 2.2253 9 1 2.4043 0.4619 2.1561 10 6 4.1349 0.2153 3.3980 11 7 5.3217 0.7149 3.6601 12 14 3.3319 -0.9661 4.6019 13 1 3.0826 -2.2659 3.9282 14 1 4.2321 -1.1762 5.7641 15 1 2.0432 -0.3959 5.0699 16 6 5.6514 1.1193 1.2251 17 6 6.0639 2.4571 1.8426 18 7 1.5846 2.1214 -1.2158 19 6 0.7372 3.3196 -1.2272 20 6 0.1695 3.4092 -2.6611 21 6 1.2442 2.6506 -3.4738 22 6 1.8941 1.7302 -2.4640 23 8 2.5907 0.7768 -2.7406 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 5.7810 0.4699 4.4787 30 1 6.0290 0.3030 1.8408 31 1 6.0673 1.0391 0.2207 32 1 5.7935 3.2681 1.1664 33 1 5.5505 2.5914 2.7946 34 1 7.1413 2.4647 2.0065 35 1 -0.0736 3.2150 -0.5063 36 1 1.3321 4.2045 -1.0011 37 1 -0.7967 2.9094 -2.7301 38 1 0.0944 4.4467 -2.9868 39 1 0.7810 2.0755 -4.2754 40 1 1.9777 3.3471 -3.8798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161559974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:06 Heat of formation + Delta-G solvation = -68.536280 kcal Electronic energy + Delta-G solvation = -22286.854405 eV Core-core repulsion = 19101.752858 eV Total energy + Delta-G solvation = -3185.101547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65312 -40.05335 -37.27344 -36.93498 -35.69724 -33.41510 -31.87078 -31.64981 -28.36971 -27.92370 -26.70288 -23.97300 -23.02578 -22.61177 -21.29717 -20.11135 -18.83326 -18.24032 -17.20144 -17.07715 -16.42577 -16.06533 -15.92979 -15.53841 -15.09713 -14.86113 -14.46885 -14.33950 -14.16101 -13.82945 -13.72068 -13.58186 -13.26677 -13.01444 -12.80196 -12.74879 -12.63054 -12.33248 -12.29594 -12.08297 -12.00792 -11.75769 -11.72521 -11.53426 -10.78695 -10.52343 -10.36886 -9.76791 -9.41641 -8.22569 -5.78698 1.44322 1.51957 1.59308 1.81018 2.04159 2.16284 2.33770 3.03146 3.15503 3.57958 3.73892 4.07700 4.09763 4.13349 4.16951 4.36843 4.48193 4.52208 4.66516 4.73986 4.79037 4.82364 4.86345 4.90621 4.95404 5.09412 5.12765 5.13281 5.18864 5.28353 5.34437 5.41101 5.49595 5.76879 5.80626 5.86147 6.43642 6.51408 7.15830 7.43042 7.64966 8.06535 8.73040 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.007043 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.849598 B = 3974.571891 C = 4629.635579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.167 3.833 4 H 0.114 0.886 5 C 0.425 3.575 6 O -0.631 6.631 7 N -0.450 5.450 8 C -0.360 4.360 9 H 0.122 0.878 10 C -0.003 4.003 11 N -0.877 5.877 12 Si 0.982 3.018 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.257 1.257 16 C 0.137 3.863 17 C -0.113 4.113 18 N -0.605 5.605 19 C 0.092 3.908 20 C -0.108 4.108 21 C -0.149 4.149 22 C 0.501 3.499 23 O -0.579 6.579 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.270 0.730 30 H 0.085 0.915 31 H 0.016 0.984 32 H 0.006 0.994 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 4.709 -3.637 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.172 4.172 3 C 0.061 3.939 4 H 0.131 0.869 5 C 0.214 3.786 6 O -0.519 6.519 7 N -0.169 5.169 8 C -0.486 4.486 9 H 0.139 0.861 10 C -0.205 4.205 11 N -0.515 5.515 12 Si 0.806 3.194 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.182 1.182 16 C 0.013 3.987 17 C -0.171 4.171 18 N -0.339 5.339 19 C -0.030 4.030 20 C -0.146 4.146 21 C -0.189 4.189 22 C 0.290 3.710 23 O -0.458 6.458 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.035 0.965 32 H 0.025 0.975 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.793 4.364 -3.991 14.094 hybrid contribution 0.775 -0.626 0.699 1.217 sum -12.018 3.738 -3.293 13.009 Atomic orbital electron populations 1.21624 0.92284 1.02416 1.02439 1.21866 0.98584 0.94279 1.02497 1.20485 0.90298 0.95382 0.87770 0.86857 1.21065 0.91477 0.82687 0.83393 1.90512 1.69207 1.55161 1.37037 1.44034 1.05858 1.54054 1.12918 1.20203 0.94161 1.42389 0.91868 0.86066 1.26033 0.96978 0.98371 0.99166 1.70331 1.15943 1.39561 1.25707 0.85151 0.78563 0.78747 0.76956 1.20053 1.21060 1.18168 1.21154 0.81150 1.00154 0.96194 1.21776 1.00060 0.94616 1.00689 1.48179 1.51080 1.29697 1.04903 1.22420 0.93974 0.85988 1.00581 1.22605 0.97755 1.03143 0.91068 1.22348 1.00052 0.98796 0.97682 1.21683 0.79254 0.84710 0.85312 1.90634 1.39906 1.32134 1.83108 0.90896 0.92545 0.91775 0.94350 0.89660 0.92020 0.89746 0.96521 0.97479 0.90417 0.93011 0.87903 0.91827 0.87892 0.86345 0.87059 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.77 71.98 0.70 -2.83 16 2 C -0.13 -5.09 4.94 30.59 0.15 -4.94 16 3 C 0.17 6.80 1.87 44.24 0.08 6.88 16 4 H 0.11 4.19 7.53 -2.39 -0.02 4.17 16 5 C 0.43 22.27 6.80 87.66 0.60 22.87 16 6 O -0.63 -37.69 13.91 15.66 0.22 -37.47 16 7 N -0.45 -23.84 2.63 -635.53 -1.67 -25.51 16 8 C -0.36 -17.72 8.31 84.04 0.70 -17.02 16 9 H 0.12 5.41 4.80 -2.91 -0.01 5.39 16 10 C 0.00 -0.14 5.07 84.93 0.43 0.29 16 11 N -0.88 -43.82 7.91 21.66 0.17 -43.65 16 12 Si 0.98 37.85 29.61 68.60 2.03 39.88 16 13 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.29 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 16 C 0.14 7.30 5.43 86.38 0.47 7.77 16 17 C -0.11 -5.55 9.44 71.98 0.68 -4.87 16 18 N -0.61 -21.31 2.00 -798.20 -1.59 -22.90 16 19 C 0.09 2.07 7.30 86.83 0.63 2.70 16 20 C -0.11 -1.68 7.18 31.65 0.23 -1.46 16 21 C -0.15 -3.66 6.86 30.59 0.21 -3.45 16 22 C 0.50 19.61 6.70 87.90 0.59 20.20 16 23 O -0.58 -29.56 15.04 15.72 0.24 -29.32 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.44 7.65 -2.39 -0.02 1.42 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.72 6.77 -2.39 -0.02 1.70 16 28 H 0.09 3.42 5.48 -2.39 -0.01 3.41 16 29 H 0.27 12.78 8.31 -92.70 -0.77 12.01 16 30 H 0.08 4.61 5.98 -2.39 -0.01 4.59 16 31 H 0.02 0.93 7.30 -2.39 -0.02 0.91 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 4.00 6.25 -2.39 -0.01 3.98 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -73.96 313.57 5.89 -68.07 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.03 Total: 24.74 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 5.47 Total: 26.15 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.09 Total: -92.06 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: 0.45 Total: -66.79 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -73.96 5.89 -68.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161559974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.466 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds