Wall clock time and date at job start Mon Mar 30 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47216 * 2 1 4 4 H 1.08995 * 109.47132 * 304.97354 * 3 2 1 5 5 C 1.50702 * 109.46960 * 184.96926 * 3 2 1 6 6 O 1.21287 * 120.00049 * 252.12687 * 5 3 2 7 7 N 1.34781 * 119.99704 * 72.12778 * 5 3 2 8 8 C 1.37096 * 120.00100 * 5.78809 * 7 5 3 9 9 H 1.08001 * 119.99779 * 351.35304 * 8 7 5 10 10 C 1.38947 * 119.99884 * 171.35053 * 8 7 5 11 11 N 1.31411 * 119.99967 * 1.30199 * 10 8 7 12 12 Si 1.86799 * 120.00111 * 181.29298 * 10 8 7 13 13 H 1.48502 * 109.46928 * 60.00066 * 12 10 8 14 14 H 1.48500 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47391 * 300.00702 * 12 10 8 16 16 C 1.46495 * 119.99828 * 185.78104 * 7 5 3 17 17 C 1.53003 * 109.47423 * 262.91996 * 16 7 5 18 18 N 1.46494 * 109.46865 * 64.97062 * 3 2 1 19 19 C 1.46763 * 124.35153 * 239.99907 * 18 3 2 20 20 C 1.54484 * 105.47435 * 197.01907 * 19 18 3 21 21 C 1.54622 * 101.76532 * 334.58389 * 20 19 18 22 22 C 1.34424 * 124.35150 * 59.70177 * 18 3 2 23 23 O 1.21285 * 124.94087 * 359.56560 * 22 18 3 24 24 H 1.09002 * 109.47086 * 59.99741 * 1 2 3 25 25 H 1.09006 * 109.47050 * 300.00261 * 1 2 3 26 26 H 1.08996 * 109.47601 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46984 * 120.00191 * 2 1 3 28 28 H 1.08996 * 109.47031 * 240.00518 * 2 1 3 29 29 H 0.97001 * 119.99953 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.47372 * 22.91956 * 16 7 5 31 31 H 1.08996 * 109.47076 * 142.91809 * 16 7 5 32 32 H 1.08999 * 109.47104 * 179.97438 * 17 16 7 33 33 H 1.08996 * 109.46705 * 300.00093 * 17 16 7 34 34 H 1.08996 * 109.47147 * 59.99856 * 17 16 7 35 35 H 1.09003 * 110.24274 * 316.01449 * 19 18 3 36 36 H 1.08994 * 110.24967 * 78.01747 * 19 18 3 37 37 H 1.09001 * 110.96698 * 92.70147 * 20 19 18 38 38 H 1.09004 * 110.96872 * 216.45915 * 20 19 18 39 39 H 1.09001 * 110.48744 * 143.47529 * 21 20 19 40 40 H 1.09007 * 110.48658 * 265.98965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9814 -0.8420 5 6 3.5420 1.4443 -0.1231 6 8 4.2285 1.7383 0.8326 7 7 4.1225 1.1190 -1.2952 8 6 3.3491 0.9025 -2.4063 9 1 2.2741 0.8542 -2.3149 10 6 3.9484 0.7452 -3.6500 11 7 5.2577 0.7785 -3.7573 12 14 2.8930 0.4862 -5.1693 13 1 1.9915 1.6523 -5.3504 14 1 3.7674 0.3461 -6.3614 15 1 2.0810 -0.7461 -5.0039 16 6 5.5797 0.9971 -1.3820 17 6 6.1695 2.3014 -1.9221 18 7 1.6519 2.0977 1.2515 19 6 0.8070 3.2950 1.3320 20 6 1.0279 3.8605 2.7526 21 6 1.4516 2.5949 3.5334 22 6 2.0190 1.6761 2.4739 23 8 2.7073 0.7023 2.6952 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 5.6761 0.6691 -4.6256 30 1 5.9873 0.7971 -0.3909 31 1 5.8364 0.1771 -2.0526 32 1 7.2538 2.2108 -1.9862 33 1 5.7620 2.5014 -2.9131 34 1 5.9128 3.1214 -1.2515 35 1 1.1150 4.0250 0.5834 36 1 -0.2403 3.0279 1.1910 37 1 1.8233 4.6058 2.7564 38 1 0.1040 4.2762 3.1550 39 1 2.2110 2.8410 4.2755 40 1 0.5870 2.1345 4.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161560113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:10 Heat of formation + Delta-G solvation = -48.694074 kcal Electronic energy + Delta-G solvation = -22278.786443 eV Core-core repulsion = 19094.545319 eV Total energy + Delta-G solvation = -3184.241124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17152 -38.24681 -35.77881 -35.05468 -34.22393 -31.41903 -30.57010 -29.74831 -27.23082 -26.43744 -24.76504 -22.13775 -21.58133 -21.50589 -19.46321 -18.51974 -17.08592 -16.40707 -16.24038 -15.55903 -14.63734 -14.23951 -14.06824 -14.00501 -13.59314 -13.25675 -13.19563 -12.81377 -12.64983 -12.44906 -12.26442 -12.01368 -11.69759 -11.34104 -11.30345 -11.14157 -10.98781 -10.92656 -10.82600 -10.55694 -10.46884 -10.29552 -10.07004 -9.83039 -9.02733 -8.80453 -8.61070 -7.82026 -7.69883 -6.19770 -3.88443 3.09004 3.16518 3.17981 3.22683 3.52394 3.94224 4.05639 4.65521 4.68498 4.90671 4.96708 5.07355 5.31101 5.49964 5.59251 5.65111 5.69021 5.72072 5.82558 5.88166 6.00274 6.11877 6.21224 6.25328 6.39550 6.51234 6.72015 6.79654 6.88133 7.00845 7.10021 7.19780 7.31566 7.59012 7.78093 7.85875 7.93191 8.50184 8.86209 9.09471 9.60255 10.00341 10.64589 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.007031 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.869567 B = 3981.320721 C = 4561.813077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.159 3.841 4 H 0.100 0.900 5 C 0.446 3.554 6 O -0.585 6.585 7 N -0.444 5.444 8 C -0.325 4.325 9 H 0.099 0.901 10 C 0.028 3.972 11 N -0.866 5.866 12 Si 0.924 3.076 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.135 3.865 17 C -0.133 4.133 18 N -0.603 5.603 19 C 0.105 3.895 20 C -0.130 4.130 21 C -0.155 4.155 22 C 0.524 3.476 23 O -0.513 6.513 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.265 0.735 30 H 0.031 0.969 31 H 0.110 0.890 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 4.155 4.781 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.118 0.882 5 C 0.232 3.768 6 O -0.470 6.470 7 N -0.164 5.164 8 C -0.453 4.453 9 H 0.116 0.884 10 C -0.174 4.174 11 N -0.507 5.507 12 Si 0.751 3.249 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.012 3.988 17 C -0.191 4.191 18 N -0.338 5.338 19 C -0.019 4.019 20 C -0.168 4.168 21 C -0.196 4.196 22 C 0.311 3.689 23 O -0.387 6.387 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.127 0.873 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.441 3.706 5.112 11.358 hybrid contribution -0.467 0.049 -1.022 1.125 sum -9.909 3.755 4.090 11.358 Atomic orbital electron populations 1.21703 0.96026 1.01089 1.01085 1.21838 0.95424 0.95592 1.04529 1.20695 0.94629 0.94351 0.84982 0.88216 1.20121 0.89349 0.83315 0.83977 1.90561 1.64236 1.53425 1.38767 1.43790 1.06377 1.58870 1.07345 1.19708 0.91526 1.48760 0.85274 0.88382 1.25243 0.96048 0.97096 0.99022 1.70218 1.08104 1.47995 1.24380 0.86037 0.79298 0.78917 0.80668 1.20005 1.20813 1.19893 1.21445 0.79310 1.00219 0.97826 1.22114 0.97922 0.96638 1.02404 1.47957 1.50875 1.28901 1.06057 1.22003 0.94521 0.87407 0.97942 1.22549 1.02461 0.97248 0.94494 1.22305 1.02594 0.96268 0.98395 1.20514 0.79287 0.85190 0.83958 1.90680 1.36513 1.28161 1.83364 0.92924 0.93375 0.93017 0.90668 0.89116 0.92339 0.95020 0.87280 0.95170 0.89500 0.96762 0.90767 0.91570 0.90194 0.89756 0.88647 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.80 37.16 0.36 -1.72 16 2 C -0.14 -2.57 5.02 -26.73 -0.13 -2.70 16 3 C 0.16 3.23 1.82 -69.08 -0.13 3.11 16 4 H 0.10 1.90 7.04 -51.93 -0.37 1.53 16 5 C 0.45 11.29 6.76 -10.98 -0.07 11.21 16 6 O -0.59 -16.68 13.91 -14.07 -0.20 -16.88 16 7 N -0.44 -11.45 2.64 -114.81 -0.30 -11.75 16 8 C -0.32 -7.97 8.38 -14.93 -0.13 -8.09 16 9 H 0.10 2.21 5.26 -52.49 -0.28 1.94 16 10 C 0.03 0.69 5.26 -17.47 -0.09 0.60 16 11 N -0.87 -21.66 7.18 55.50 0.40 -21.26 16 12 Si 0.92 18.83 29.55 -169.99 -5.02 13.81 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 16 C 0.13 3.49 5.45 -4.04 -0.02 3.46 16 17 C -0.13 -3.24 9.46 37.16 0.35 -2.88 16 18 N -0.60 -10.86 2.16 -166.16 -0.36 -11.22 16 19 C 0.10 1.34 7.30 -3.12 -0.02 1.32 16 20 C -0.13 -1.39 7.18 -25.10 -0.18 -1.57 16 21 C -0.16 -2.07 6.86 -26.74 -0.18 -2.25 16 22 C 0.52 10.17 6.68 -10.86 -0.07 10.10 16 23 O -0.51 -12.43 14.96 -14.07 -0.21 -12.64 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.61 6.60 -51.93 -0.34 1.27 16 28 H 0.09 1.82 6.46 -51.93 -0.34 1.48 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.03 0.85 7.30 -51.93 -0.38 0.47 16 31 H 0.11 2.91 5.90 -51.93 -0.31 2.61 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 2.22 5.86 -51.93 -0.30 1.91 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -31.85 313.58 -7.36 -39.21 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.07 Total: 5.42 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.32 Total: 10.58 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.26 Total: -44.23 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.41 Total: -29.52 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.85 -7.36 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161560113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.483 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds