Wall clock time and date at job start Mon Mar 30 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47216 * 2 1 4 4 H 1.08995 * 109.47132 * 304.97354 * 3 2 1 5 5 C 1.50702 * 109.46960 * 184.96926 * 3 2 1 6 6 O 1.21287 * 120.00049 * 252.12687 * 5 3 2 7 7 N 1.34781 * 119.99704 * 72.12778 * 5 3 2 8 8 C 1.37096 * 120.00100 * 5.78809 * 7 5 3 9 9 H 1.08001 * 119.99779 * 351.35304 * 8 7 5 10 10 C 1.38947 * 119.99884 * 171.35053 * 8 7 5 11 11 N 1.31411 * 119.99967 * 1.30199 * 10 8 7 12 12 Si 1.86799 * 120.00111 * 181.29298 * 10 8 7 13 13 H 1.48502 * 109.46928 * 60.00066 * 12 10 8 14 14 H 1.48500 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47391 * 300.00702 * 12 10 8 16 16 C 1.46495 * 119.99828 * 185.78104 * 7 5 3 17 17 C 1.53003 * 109.47423 * 262.91996 * 16 7 5 18 18 N 1.46494 * 109.46865 * 64.97062 * 3 2 1 19 19 C 1.46763 * 124.35153 * 239.99907 * 18 3 2 20 20 C 1.54484 * 105.47435 * 197.01907 * 19 18 3 21 21 C 1.54622 * 101.76532 * 334.58389 * 20 19 18 22 22 C 1.34424 * 124.35150 * 59.70177 * 18 3 2 23 23 O 1.21285 * 124.94087 * 359.56560 * 22 18 3 24 24 H 1.09002 * 109.47086 * 59.99741 * 1 2 3 25 25 H 1.09006 * 109.47050 * 300.00261 * 1 2 3 26 26 H 1.08996 * 109.47601 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46984 * 120.00191 * 2 1 3 28 28 H 1.08996 * 109.47031 * 240.00518 * 2 1 3 29 29 H 0.97001 * 119.99953 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.47372 * 22.91956 * 16 7 5 31 31 H 1.08996 * 109.47076 * 142.91809 * 16 7 5 32 32 H 1.08999 * 109.47104 * 179.97438 * 17 16 7 33 33 H 1.08996 * 109.46705 * 300.00093 * 17 16 7 34 34 H 1.08996 * 109.47147 * 59.99856 * 17 16 7 35 35 H 1.09003 * 110.24274 * 316.01449 * 19 18 3 36 36 H 1.08994 * 110.24967 * 78.01747 * 19 18 3 37 37 H 1.09001 * 110.96698 * 92.70147 * 20 19 18 38 38 H 1.09004 * 110.96872 * 216.45915 * 20 19 18 39 39 H 1.09001 * 110.48744 * 143.47529 * 21 20 19 40 40 H 1.09007 * 110.48658 * 265.98965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9814 -0.8420 5 6 3.5420 1.4443 -0.1231 6 8 4.2285 1.7383 0.8326 7 7 4.1225 1.1190 -1.2952 8 6 3.3491 0.9025 -2.4063 9 1 2.2741 0.8542 -2.3149 10 6 3.9484 0.7452 -3.6500 11 7 5.2577 0.7785 -3.7573 12 14 2.8930 0.4862 -5.1693 13 1 1.9915 1.6523 -5.3504 14 1 3.7674 0.3461 -6.3614 15 1 2.0810 -0.7461 -5.0039 16 6 5.5797 0.9971 -1.3820 17 6 6.1695 2.3014 -1.9221 18 7 1.6519 2.0977 1.2515 19 6 0.8070 3.2950 1.3320 20 6 1.0279 3.8605 2.7526 21 6 1.4516 2.5949 3.5334 22 6 2.0190 1.6761 2.4739 23 8 2.7073 0.7023 2.6952 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 5.6761 0.6691 -4.6256 30 1 5.9873 0.7971 -0.3909 31 1 5.8364 0.1771 -2.0526 32 1 7.2538 2.2108 -1.9862 33 1 5.7620 2.5014 -2.9131 34 1 5.9128 3.1214 -1.2515 35 1 1.1150 4.0250 0.5834 36 1 -0.2403 3.0279 1.1910 37 1 1.8233 4.6058 2.7564 38 1 0.1040 4.2762 3.1550 39 1 2.2110 2.8410 4.2755 40 1 0.5870 2.1345 4.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161560113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:10 Heat of formation + Delta-G solvation = -67.585629 kcal Electronic energy + Delta-G solvation = -22279.605643 eV Core-core repulsion = 19094.545319 eV Total energy + Delta-G solvation = -3185.060323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64755 -40.05460 -37.27964 -36.97696 -35.70821 -33.34739 -31.82680 -31.69226 -28.36342 -27.94082 -26.68506 -23.96817 -23.00941 -22.62061 -21.30826 -20.16875 -18.78037 -18.13315 -17.49337 -17.11088 -16.28377 -16.07023 -15.65660 -15.58206 -15.18211 -14.85489 -14.48823 -14.39135 -14.24058 -13.84840 -13.60543 -13.52723 -13.24247 -13.05802 -12.74740 -12.70859 -12.63459 -12.34607 -12.25811 -12.03911 -11.98467 -11.81697 -11.75667 -11.74858 -10.78060 -10.55350 -10.34975 -9.69787 -9.42052 -8.08265 -5.83744 1.47906 1.51509 1.60942 1.77635 2.04468 2.19591 2.34921 3.04381 3.19688 3.57863 3.72026 4.05361 4.09326 4.13683 4.17715 4.33518 4.48249 4.53558 4.66835 4.72455 4.76084 4.84033 4.90667 4.91398 4.97772 5.09967 5.10749 5.12894 5.16287 5.28151 5.34057 5.43293 5.53272 5.77119 5.83447 5.90171 6.43272 6.54183 7.16509 7.42644 7.65515 8.05812 8.78019 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.007031 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.869567 B = 3981.320721 C = 4561.813077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 C 0.166 3.834 4 H 0.116 0.884 5 C 0.426 3.574 6 O -0.629 6.629 7 N -0.454 5.454 8 C -0.345 4.345 9 H 0.117 0.883 10 C -0.013 4.013 11 N -0.890 5.890 12 Si 0.995 3.005 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.136 3.864 17 C -0.115 4.115 18 N -0.607 5.607 19 C 0.094 3.906 20 C -0.115 4.115 21 C -0.146 4.146 22 C 0.501 3.499 23 O -0.578 6.578 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.267 0.733 30 H 0.008 0.992 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.001 0.999 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 5.429 4.022 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.059 3.941 4 H 0.134 0.866 5 C 0.215 3.785 6 O -0.517 6.517 7 N -0.172 5.172 8 C -0.472 4.472 9 H 0.134 0.866 10 C -0.213 4.213 11 N -0.530 5.530 12 Si 0.818 3.182 13 H -0.188 1.188 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.013 3.987 17 C -0.173 4.173 18 N -0.341 5.341 19 C -0.028 4.028 20 C -0.153 4.153 21 C -0.186 4.186 22 C 0.290 3.710 23 O -0.458 6.458 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.020 0.980 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.797 5.022 4.343 14.417 hybrid contribution 0.658 -0.367 -0.797 1.097 sum -12.139 4.656 3.546 13.476 Atomic orbital electron populations 1.21628 0.92067 1.02499 1.02526 1.21729 0.98702 0.94183 1.01992 1.20546 0.90841 0.95720 0.86951 0.86606 1.21126 0.91770 0.82545 0.83098 1.90516 1.65861 1.55306 1.39995 1.44055 1.06262 1.58618 1.08292 1.20153 0.92380 1.49530 0.85089 0.86560 1.26148 0.97265 0.96240 1.01659 1.70309 1.09609 1.47971 1.25122 0.84948 0.77613 0.79256 0.76335 1.18774 1.21188 1.19129 1.21357 0.80469 1.00764 0.96131 1.21926 0.98891 0.95221 1.01246 1.48195 1.50900 1.30114 1.04849 1.22442 0.95378 0.85518 0.99421 1.22617 1.04463 0.95615 0.92593 1.22337 1.03334 0.96184 0.96739 1.21704 0.78457 0.85080 0.85727 1.90633 1.39446 1.31139 1.84552 0.90888 0.92355 0.91725 0.94077 0.90783 0.92201 0.97398 0.88122 0.93413 0.90227 0.97959 0.90559 0.87951 0.90834 0.85009 0.88766 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.80 71.98 0.71 -2.78 16 2 C -0.13 -4.84 5.02 30.60 0.15 -4.69 16 3 C 0.17 6.72 1.82 44.25 0.08 6.80 16 4 H 0.12 4.24 7.04 -2.39 -0.02 4.22 16 5 C 0.43 22.36 6.76 87.66 0.59 22.95 16 6 O -0.63 -37.76 13.91 15.71 0.22 -37.54 16 7 N -0.45 -24.11 2.64 -635.54 -1.68 -25.78 16 8 C -0.34 -16.91 8.38 84.04 0.70 -16.20 16 9 H 0.12 5.13 5.26 -2.91 -0.02 5.11 16 10 C -0.01 -0.62 5.26 84.93 0.45 -0.17 16 11 N -0.89 -44.68 7.18 21.66 0.16 -44.53 16 12 Si 1.00 37.46 29.55 68.60 2.03 39.49 16 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 14 H -0.29 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 16 C 0.14 7.36 5.45 86.38 0.47 7.83 16 17 C -0.11 -5.74 9.46 71.98 0.68 -5.06 16 18 N -0.61 -21.28 2.16 -798.19 -1.72 -23.00 16 19 C 0.09 2.08 7.30 86.83 0.63 2.71 16 20 C -0.12 -2.03 7.18 31.65 0.23 -1.81 16 21 C -0.15 -3.57 6.86 30.59 0.21 -3.36 16 22 C 0.50 19.53 6.68 87.90 0.59 20.12 16 23 O -0.58 -29.46 14.96 15.71 0.24 -29.22 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.45 7.75 -2.38 -0.02 1.43 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.83 6.60 -2.39 -0.02 1.82 16 28 H 0.07 3.00 6.46 -2.39 -0.02 2.99 16 29 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 30 H 0.01 0.44 7.30 -2.38 -0.02 0.42 16 31 H 0.10 5.60 5.90 -2.39 -0.01 5.59 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 4.12 5.86 -2.39 -0.01 4.10 16 34 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -74.45 313.58 5.76 -68.69 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 1.03 Total: 25.54 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 5.49 Total: 26.35 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -3.24 Total: -93.31 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: 0.45 Total: -66.76 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -74.45 5.76 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161560113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.106 kcal (2) G-P(sol) polarization free energy of solvation -74.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds