Wall clock time and date at job start Mon Mar 30 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47263 * 2 1 4 4 C 1.50705 * 109.46901 * 120.00292 * 2 1 3 5 5 O 1.21277 * 119.99550 * 239.99814 * 4 2 1 6 6 N 1.34772 * 119.99945 * 60.00127 * 4 2 1 7 7 C 1.46501 * 119.99776 * 180.02562 * 6 4 2 8 8 C 1.53353 * 109.41783 * 275.12184 * 7 6 4 9 9 C 1.53188 * 109.15114 * 178.67720 * 8 7 6 10 10 N 1.46922 * 108.89394 * 54.57762 * 9 8 7 11 11 C 1.34776 * 120.62898 * 126.34399 * 10 9 8 12 12 O 1.21689 * 120.00329 * 354.75880 * 11 10 9 13 13 C 1.46378 * 119.99861 * 174.75957 * 11 10 9 14 14 H 1.07998 * 119.99844 * 5.00940 * 13 11 10 15 15 C 1.40048 * 119.99682 * 185.00494 * 13 11 10 16 16 N 1.30671 * 120.00214 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99758 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47531 * 89.99985 * 17 15 13 19 19 H 1.48499 * 109.47224 * 210.00300 * 17 15 13 20 20 H 1.48503 * 109.47314 * 330.00155 * 17 15 13 21 21 C 1.46923 * 118.74131 * 306.32015 * 10 9 8 22 22 C 1.53045 * 109.46162 * 154.99853 * 7 6 4 23 23 H 1.09000 * 109.46831 * 59.99674 * 1 2 3 24 24 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47098 * 300.00128 * 1 2 3 26 26 H 1.09000 * 109.46624 * 239.99988 * 2 1 3 27 27 H 1.09000 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47215 * 300.00105 * 3 2 1 29 29 H 1.09007 * 109.46711 * 60.00134 * 3 2 1 30 30 H 0.97007 * 120.00166 * 359.97438 * 6 4 2 31 31 H 1.08995 * 109.46338 * 35.02187 * 7 6 4 32 32 H 1.09005 * 109.68105 * 58.70746 * 8 7 6 33 33 H 1.09003 * 109.47310 * 298.51719 * 8 7 6 34 34 H 1.08999 * 109.58478 * 294.72229 * 9 8 7 35 35 H 1.08999 * 109.58399 * 174.44034 * 9 8 7 36 36 H 0.96998 * 119.99786 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.58992 * 173.39368 * 21 10 9 38 38 H 1.08999 * 109.59224 * 293.68124 * 21 10 9 39 39 H 1.09003 * 109.49640 * 61.42929 * 22 7 6 40 40 H 1.09000 * 109.51983 * 301.35021 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1946 -2.6913 2.6401 8 6 3.6017 -3.2398 2.3741 9 6 4.1190 -3.9315 3.6392 10 7 3.1433 -4.9466 4.0592 11 6 3.5248 -6.2233 4.2617 12 8 4.6641 -6.5659 4.0058 13 6 2.5687 -7.1978 4.7896 14 1 1.5373 -6.9152 4.9405 15 6 2.9914 -8.4967 5.0989 16 7 4.2394 -8.8385 4.9167 17 14 1.7710 -9.7406 5.7719 18 1 1.1451 -10.4793 4.6459 19 1 2.4787 -10.6980 6.6595 20 1 0.7190 -9.0334 6.5455 21 6 1.7441 -4.5435 4.2545 22 6 1.2500 -3.8455 2.9835 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.1487 -2.4721 0.8053 31 1 2.2304 -1.9909 3.4744 32 1 4.2705 -2.4213 2.1076 33 1 3.5627 -3.9592 1.5561 34 1 4.2445 -3.1951 4.4330 35 1 5.0759 -4.4092 3.4292 36 1 4.5320 -9.7382 5.1306 37 1 1.1333 -5.4253 4.4480 38 1 1.6756 -3.8589 5.1000 39 1 1.2330 -4.5591 2.1597 40 1 0.2452 -3.4569 3.1490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169877305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:16 Heat of formation + Delta-G solvation = -90.023581 kcal Electronic energy + Delta-G solvation = -20901.726083 eV Core-core repulsion = 17715.692777 eV Total energy + Delta-G solvation = -3186.033306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.10199 -38.39148 -36.14033 -34.60924 -33.83875 -32.53644 -30.74450 -30.25178 -27.34100 -26.40320 -24.70162 -22.75513 -22.65586 -20.62315 -19.89630 -18.88353 -17.26517 -16.59659 -16.15940 -15.55327 -15.34165 -14.47299 -14.30607 -14.18817 -13.97182 -13.79672 -13.42021 -13.09246 -12.83075 -12.54414 -12.43014 -12.12713 -11.82465 -11.62135 -11.40963 -11.37264 -11.26022 -11.12974 -10.94411 -10.77445 -10.69240 -10.35860 -10.24201 -9.94301 -9.64302 -8.91029 -8.87762 -7.59318 -7.24973 -6.21604 -4.66969 2.66342 3.11713 3.18848 3.19813 3.21855 4.06507 4.50177 4.52191 4.58202 4.66282 4.73360 4.98495 5.15987 5.22229 5.34437 5.41955 5.47077 5.59716 5.62318 5.68197 5.75369 5.81802 5.87489 5.90857 6.01965 6.05591 6.21226 6.24831 6.40703 6.47278 6.56839 6.66375 6.74807 7.43164 7.54667 7.60749 8.11343 8.26582 8.33338 8.99962 9.41898 10.55860 10.74426 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.003900 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.878504 B = 7178.471865 C = 7606.468843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.132 4.132 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.725 5.725 7 C 0.147 3.853 8 C -0.138 4.138 9 C 0.123 3.877 10 N -0.643 5.643 11 C 0.559 3.441 12 O -0.577 6.577 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.126 3.874 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.397 0.603 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 13.850 -8.894 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.189 4.189 4 C 0.300 3.700 5 O -0.418 6.418 6 N -0.375 5.375 7 C 0.043 3.957 8 C -0.177 4.177 9 C -0.002 4.002 10 N -0.381 5.381 11 C 0.365 3.635 12 O -0.460 6.460 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.396 5.396 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.001 3.999 22 C -0.179 4.179 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.689 13.923 -8.422 18.447 hybrid contribution -0.951 -0.820 -0.073 1.258 sum -9.640 13.103 -8.495 18.352 Atomic orbital electron populations 1.21784 0.93021 1.02488 1.02812 1.21325 0.97511 0.98108 0.96894 1.21598 1.01845 0.93604 1.01903 1.20669 0.80025 0.81789 0.87545 1.90696 1.37806 1.66271 1.47025 1.46235 1.53460 1.11951 1.25863 1.21089 0.93930 0.93512 0.87197 1.22333 0.95842 0.99773 0.99790 1.21083 0.94869 0.90658 0.93608 1.48213 1.06754 1.09442 1.73729 1.18257 0.88289 0.79283 0.77649 1.90592 1.21776 1.77677 1.55954 1.20977 0.95955 0.95463 1.45772 0.90902 1.25735 0.95177 0.98694 0.93645 1.70015 1.15605 1.18682 1.35337 0.86394 0.80933 0.80354 0.79219 1.19746 1.20457 1.18860 1.21346 0.85136 0.99475 0.93922 1.22259 0.98024 0.96895 1.00761 0.91539 0.92109 0.92054 0.88665 0.91960 0.92240 0.91974 0.76898 0.89702 0.91672 0.91814 0.93805 0.89552 0.92072 0.88446 0.93701 0.91172 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.09 37.16 0.34 -0.64 16 2 C -0.12 -1.03 3.26 -91.77 -0.30 -1.33 16 3 C -0.13 -1.18 8.48 37.16 0.32 -0.87 16 4 C 0.51 6.53 7.12 -10.98 -0.08 6.45 16 5 O -0.54 -9.13 15.64 5.56 0.09 -9.04 16 6 N -0.72 -8.54 4.97 -53.61 -0.27 -8.81 16 7 C 0.15 2.14 2.42 -67.72 -0.16 1.97 16 8 C -0.14 -2.32 5.68 -26.45 -0.15 -2.47 16 9 C 0.12 2.48 6.43 -3.71 -0.02 2.46 16 10 N -0.64 -14.49 2.97 -174.44 -0.52 -15.01 16 11 C 0.56 15.80 7.62 -12.99 -0.10 15.70 16 12 O -0.58 -18.68 14.45 5.20 0.08 -18.61 16 13 C -0.55 -15.01 8.86 -35.63 -0.32 -15.32 16 14 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16 15 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 16 N -0.77 -22.85 11.84 55.55 0.66 -22.19 16 17 Si 0.91 19.73 29.56 -169.99 -5.02 14.71 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 C 0.13 2.27 6.31 -3.71 -0.02 2.24 16 22 C -0.14 -1.99 5.55 -26.61 -0.15 -2.14 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.40 3.62 8.02 -40.82 -0.33 3.29 16 31 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.96 6.99 -51.93 -0.36 1.60 16 36 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 37 H 0.10 1.81 5.37 -51.93 -0.28 1.53 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -35.21 324.21 -7.10 -42.31 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.26 Total: 3.39 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -0.74 Total: 8.37 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.13 Total: -46.01 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.16 Total: -27.65 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.21 -7.10 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169877305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.713 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds