Wall clock time and date at job start Mon Mar 30 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.50703 * 109.46752 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00268 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99661 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99929 * 180.02562 * 6 4 3 8 8 C 1.53072 * 109.44195 * 84.79457 * 7 6 4 9 9 C 1.53191 * 109.29477 * 181.23664 * 8 7 6 10 10 N 1.46934 * 108.89273 * 305.58196 * 9 8 7 11 11 C 1.34779 * 120.62601 * 233.55707 * 10 9 8 12 12 O 1.21686 * 120.00337 * 354.74939 * 11 10 9 13 13 C 1.46373 * 119.99553 * 174.74174 * 11 10 9 14 14 H 1.08005 * 119.99942 * 5.60649 * 13 11 10 15 15 C 1.40048 * 119.99921 * 185.59755 * 13 11 10 16 16 N 1.30674 * 120.00304 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99849 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47287 * 60.00539 * 17 15 13 19 19 H 1.48509 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47115 * 299.99994 * 17 15 13 21 21 C 1.46926 * 118.73697 * 53.53560 * 10 9 8 22 22 C 1.53035 * 109.45820 * 205.00420 * 7 6 4 23 23 H 1.08992 * 109.47593 * 60.00142 * 1 2 3 24 24 H 1.09005 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.99463 * 1 2 3 26 26 H 1.09000 * 109.47119 * 239.99802 * 2 1 3 27 27 H 1.09003 * 109.47010 * 120.00302 * 2 1 3 28 28 H 1.08995 * 109.47048 * 60.00326 * 3 2 1 29 29 H 1.08996 * 109.47229 * 299.99703 * 3 2 1 30 30 H 0.96995 * 119.99837 * 0.02562 * 6 4 3 31 31 H 1.09002 * 109.45720 * 324.96847 * 7 6 4 32 32 H 1.08997 * 109.38712 * 61.35961 * 8 7 6 33 33 H 1.08999 * 109.62576 * 301.25118 * 8 7 6 34 34 H 1.08994 * 109.59009 * 185.72359 * 9 8 7 35 35 H 1.08999 * 109.58886 * 65.43570 * 9 8 7 36 36 H 0.96993 * 120.00281 * 179.97438 * 16 15 13 37 37 H 1.08991 * 109.58898 * 66.18331 * 21 10 9 38 38 H 1.09002 * 109.58153 * 186.46406 * 21 10 9 39 39 H 1.08997 * 109.50163 * 58.67062 * 22 7 6 40 40 H 1.09002 * 109.52115 * 298.59084 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6097 -0.0013 7 6 5.6859 2.6097 -0.0025 8 6 6.1942 2.4786 -1.4403 9 6 7.7258 2.4479 -1.4349 10 7 8.2230 3.6325 -0.7218 11 6 9.1159 4.4587 -1.3019 12 8 9.5903 4.1770 -2.3865 13 6 9.5149 5.6949 -0.6273 14 1 9.1646 5.9013 0.3733 15 6 10.3510 6.6099 -1.2793 16 7 10.7745 6.3603 -2.4900 17 14 10.8607 8.1872 -0.4180 18 1 11.5957 7.8551 0.8289 19 1 11.7399 8.9792 -1.3153 20 1 9.6515 8.9815 -0.0833 21 6 7.7277 3.8993 0.6355 22 6 6.1962 3.9174 0.6069 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7358 3.4497 -0.0009 31 1 6.0495 1.7682 0.5873 32 1 5.8495 3.3314 -2.0251 33 1 5.8135 1.5571 -1.8807 34 1 8.0952 2.4571 -2.4604 35 1 8.0715 1.5458 -0.9301 36 1 11.3533 6.9942 -2.9417 37 1 8.0714 3.1157 1.3106 38 1 8.1004 4.8651 0.9770 39 1 5.8145 4.0188 1.6229 40 1 5.8535 4.7584 0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169889668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:19 Heat of formation + Delta-G solvation = -92.492095 kcal Electronic energy + Delta-G solvation = -20641.631277 eV Core-core repulsion = 17455.490929 eV Total energy + Delta-G solvation = -3186.140349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97496 -38.35553 -36.15541 -34.50781 -33.88769 -32.54453 -30.85368 -30.41308 -28.02572 -26.34260 -24.03021 -22.71461 -21.96550 -20.61954 -20.20986 -18.92629 -17.15262 -16.52961 -16.14687 -15.95163 -15.45216 -14.49087 -14.34177 -14.29250 -14.00761 -13.85483 -13.34298 -13.31847 -13.03577 -12.44471 -12.25632 -11.97089 -11.80891 -11.60204 -11.44506 -11.34388 -11.13458 -10.96103 -10.93715 -10.76707 -10.69584 -10.36159 -10.26055 -9.94909 -9.70580 -8.91734 -8.87248 -7.59797 -7.25506 -6.21751 -4.67156 2.66533 3.12941 3.18379 3.19797 3.20727 4.06166 4.53741 4.54328 4.62147 4.69570 4.77958 5.00660 5.17897 5.22792 5.27129 5.38400 5.43980 5.50896 5.62053 5.73766 5.79306 5.82509 5.90217 5.92895 6.02686 6.10049 6.20427 6.25657 6.41280 6.47044 6.56833 6.65278 6.75227 7.43003 7.54684 7.60464 8.10974 8.26658 8.32799 8.99625 9.41721 10.55759 10.74239 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042285 B = 0.003600 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.014817 B = 7774.864222 C = 8096.796697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.509 3.491 5 O -0.543 6.543 6 N -0.727 5.727 7 C 0.147 3.853 8 C -0.138 4.138 9 C 0.124 3.876 10 N -0.643 5.643 11 C 0.560 3.440 12 O -0.577 6.577 13 C -0.546 4.546 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.906 3.094 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.126 3.874 22 C -0.140 4.140 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.398 0.602 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.269 0.731 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.474 -4.881 7.289 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.295 3.705 5 O -0.420 6.420 6 N -0.377 5.377 7 C 0.043 3.957 8 C -0.178 4.178 9 C -0.001 4.001 10 N -0.382 5.382 11 C 0.366 3.634 12 O -0.460 6.460 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.193 1.193 21 C 0.000 4.000 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.630 -5.736 6.506 18.756 hybrid contribution -0.132 1.271 0.477 1.364 sum -16.763 -4.465 6.983 18.700 Atomic orbital electron populations 1.21797 0.95622 1.01884 1.01707 1.21272 0.95083 0.94824 1.03586 1.21730 0.92135 1.00088 1.04211 1.20750 0.90192 0.83808 0.75743 1.90701 1.70541 1.31328 1.49418 1.46260 1.07799 1.08430 1.75251 1.21026 0.78248 0.99139 0.97314 1.22284 0.97609 1.01837 0.96032 1.21073 0.91028 0.88723 0.99298 1.48225 1.47591 1.26927 1.15434 1.18243 0.77292 0.82934 0.84962 1.90593 1.56893 1.75424 1.23074 1.20934 1.31819 1.03161 1.02296 0.90938 1.25730 0.94280 0.98866 0.94348 1.70000 1.24959 1.33709 1.11021 0.86456 0.79032 0.81578 0.79831 1.19220 1.20559 1.19289 1.21364 0.90631 1.02318 0.85650 1.22246 0.98546 0.96622 1.00504 0.92715 0.92475 0.92750 0.91233 0.91288 0.89104 0.89047 0.76858 0.89749 0.91804 0.91644 0.89615 0.93863 0.92004 0.93803 0.88329 0.91403 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.11 -0.98 5.22 -26.73 -0.14 -1.12 16 3 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 4 C 0.51 6.36 7.79 -10.98 -0.09 6.28 16 5 O -0.54 -9.08 15.65 5.56 0.09 -8.99 16 6 N -0.73 -8.50 5.08 -53.75 -0.27 -8.77 16 7 C 0.15 2.14 2.41 -67.87 -0.16 1.98 16 8 C -0.14 -2.32 5.66 -26.59 -0.15 -2.47 16 9 C 0.12 2.50 6.41 -3.71 -0.02 2.48 16 10 N -0.64 -14.53 2.97 -174.43 -0.52 -15.04 16 11 C 0.56 15.83 7.61 -12.99 -0.10 15.73 16 12 O -0.58 -18.71 14.48 5.20 0.08 -18.64 16 13 C -0.55 -14.99 8.88 -35.63 -0.32 -15.31 16 14 H 0.07 1.79 5.64 -52.48 -0.30 1.49 16 15 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 16 N -0.77 -22.85 11.84 55.55 0.66 -22.19 16 17 Si 0.91 19.70 29.56 -169.99 -5.02 14.67 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.13 2.25 6.35 -3.71 -0.02 2.23 16 22 C -0.14 -1.99 5.55 -26.61 -0.15 -2.14 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 31 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.95 7.04 -51.93 -0.37 1.58 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.83 5.30 -51.93 -0.28 1.56 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -35.27 326.11 -7.42 -42.69 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.31 Total: 3.39 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.04 Total: 7.96 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.13 Total: -46.00 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.16 Total: -27.63 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.27 -7.42 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169889668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.799 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds