Wall clock time and date at job start Mon Mar 30 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.50703 * 109.46752 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00268 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99661 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99929 * 180.02562 * 6 4 3 8 8 C 1.53072 * 109.44195 * 84.79457 * 7 6 4 9 9 C 1.53191 * 109.29477 * 181.23664 * 8 7 6 10 10 N 1.46934 * 108.89273 * 305.58196 * 9 8 7 11 11 C 1.34779 * 120.62601 * 233.55707 * 10 9 8 12 12 O 1.21686 * 120.00337 * 354.74939 * 11 10 9 13 13 C 1.46373 * 119.99553 * 174.74174 * 11 10 9 14 14 H 1.08005 * 119.99942 * 5.60649 * 13 11 10 15 15 C 1.40048 * 119.99921 * 185.59755 * 13 11 10 16 16 N 1.30674 * 120.00304 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99849 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47287 * 60.00539 * 17 15 13 19 19 H 1.48509 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47115 * 299.99994 * 17 15 13 21 21 C 1.46926 * 118.73697 * 53.53560 * 10 9 8 22 22 C 1.53035 * 109.45820 * 205.00420 * 7 6 4 23 23 H 1.08992 * 109.47593 * 60.00142 * 1 2 3 24 24 H 1.09005 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.99463 * 1 2 3 26 26 H 1.09000 * 109.47119 * 239.99802 * 2 1 3 27 27 H 1.09003 * 109.47010 * 120.00302 * 2 1 3 28 28 H 1.08995 * 109.47048 * 60.00326 * 3 2 1 29 29 H 1.08996 * 109.47229 * 299.99703 * 3 2 1 30 30 H 0.96995 * 119.99837 * 0.02562 * 6 4 3 31 31 H 1.09002 * 109.45720 * 324.96847 * 7 6 4 32 32 H 1.08997 * 109.38712 * 61.35961 * 8 7 6 33 33 H 1.08999 * 109.62576 * 301.25118 * 8 7 6 34 34 H 1.08994 * 109.59009 * 185.72359 * 9 8 7 35 35 H 1.08999 * 109.58886 * 65.43570 * 9 8 7 36 36 H 0.96993 * 120.00281 * 179.97438 * 16 15 13 37 37 H 1.08991 * 109.58898 * 66.18331 * 21 10 9 38 38 H 1.09002 * 109.58153 * 186.46406 * 21 10 9 39 39 H 1.08997 * 109.50163 * 58.67062 * 22 7 6 40 40 H 1.09002 * 109.52115 * 298.59084 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6097 -0.0013 7 6 5.6859 2.6097 -0.0025 8 6 6.1942 2.4786 -1.4403 9 6 7.7258 2.4479 -1.4349 10 7 8.2230 3.6325 -0.7218 11 6 9.1159 4.4587 -1.3019 12 8 9.5903 4.1770 -2.3865 13 6 9.5149 5.6949 -0.6273 14 1 9.1646 5.9013 0.3733 15 6 10.3510 6.6099 -1.2793 16 7 10.7745 6.3603 -2.4900 17 14 10.8607 8.1872 -0.4180 18 1 11.5957 7.8551 0.8289 19 1 11.7399 8.9792 -1.3153 20 1 9.6515 8.9815 -0.0833 21 6 7.7277 3.8993 0.6355 22 6 6.1962 3.9174 0.6069 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7358 3.4497 -0.0009 31 1 6.0495 1.7682 0.5873 32 1 5.8495 3.3314 -2.0251 33 1 5.8135 1.5571 -1.8807 34 1 8.0952 2.4571 -2.4604 35 1 8.0715 1.5458 -0.9301 36 1 11.3533 6.9942 -2.9417 37 1 8.0714 3.1157 1.3106 38 1 8.1004 4.8651 0.9770 39 1 5.8145 4.0188 1.6229 40 1 5.8535 4.7584 0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169889668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:19 Heat of formation + Delta-G solvation = -118.105611 kcal Electronic energy + Delta-G solvation = -20642.741963 eV Core-core repulsion = 17455.490929 eV Total energy + Delta-G solvation = -3187.251034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11919 -39.97496 -37.85989 -35.40976 -35.20015 -34.63367 -32.36458 -31.83165 -28.92702 -28.25333 -25.46058 -24.22655 -22.86411 -22.09430 -21.21607 -20.58755 -18.64106 -17.89387 -17.79591 -17.00417 -16.74300 -16.25299 -15.91131 -15.57973 -15.32409 -15.00958 -14.65784 -14.60167 -14.22516 -13.93564 -13.54292 -13.36924 -13.08637 -12.83646 -12.80885 -12.68647 -12.58846 -12.45308 -12.18825 -12.00704 -11.99864 -11.80302 -11.60562 -11.51887 -10.90440 -10.81609 -10.07067 -9.76635 -9.13114 -8.27825 -6.82927 1.41821 1.45347 1.56895 1.69780 2.21709 2.25011 2.48385 2.82296 3.60196 3.69518 3.84321 3.90097 4.04831 4.15151 4.17189 4.20844 4.35134 4.53947 4.57617 4.70275 4.73874 4.79314 4.85091 4.88829 4.90344 4.96017 4.97649 5.06753 5.25339 5.30167 5.34636 5.40986 5.46780 5.54657 5.77038 6.15220 6.37889 6.63412 6.89012 7.33167 7.43131 8.47463 8.68532 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042285 B = 0.003600 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.014817 B = 7774.864222 C = 8096.796697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.504 3.496 5 O -0.590 6.590 6 N -0.714 5.714 7 C 0.156 3.844 8 C -0.124 4.124 9 C 0.123 3.877 10 N -0.645 5.645 11 C 0.540 3.460 12 O -0.636 6.636 13 C -0.566 4.566 14 H 0.099 0.901 15 C 0.027 3.973 16 N -0.826 5.826 17 Si 0.997 3.003 18 H -0.254 1.254 19 H -0.279 1.279 20 H -0.249 1.249 21 C 0.117 3.883 22 C -0.125 4.125 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.273 0.727 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.847 -3.169 9.861 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.172 4.172 4 C 0.293 3.707 5 O -0.471 6.471 6 N -0.366 5.366 7 C 0.050 3.950 8 C -0.164 4.164 9 C -0.002 4.002 10 N -0.382 5.382 11 C 0.346 3.654 12 O -0.523 6.523 13 C -0.603 4.603 14 H 0.117 0.883 15 C -0.188 4.188 16 N -0.455 5.455 17 Si 0.816 3.184 18 H -0.178 1.178 19 H -0.204 1.204 20 H -0.173 1.173 21 C -0.006 4.006 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.253 0.747 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.084 -4.025 9.133 21.536 hybrid contribution 0.587 0.619 -0.329 0.914 sum -18.496 -3.406 8.804 20.766 Atomic orbital electron populations 1.21754 0.93574 1.02330 1.02783 1.21263 0.96788 0.95015 1.01868 1.21771 0.88573 1.00147 1.06662 1.21544 0.91900 0.82984 0.74291 1.90691 1.71802 1.33056 1.51526 1.46063 1.06407 1.09390 1.74705 1.20718 0.80184 0.99008 0.95043 1.22114 0.94683 1.01495 0.98081 1.21098 0.93539 0.88338 0.97201 1.48100 1.46506 1.26430 1.17115 1.18732 0.77915 0.84118 0.84613 1.90541 1.59274 1.76946 1.25571 1.21484 1.32146 1.03119 1.03510 0.88279 1.27041 0.93622 1.03251 0.94863 1.70198 1.26130 1.35737 1.13484 0.85083 0.79157 0.75715 0.78439 1.17795 1.20385 1.17273 1.21628 0.93352 1.02548 0.83082 1.22106 0.95444 0.96082 1.02763 0.91802 0.92476 0.91423 0.93324 0.92834 0.86112 0.86794 0.74709 0.90907 0.92449 0.91660 0.93225 0.92999 0.91685 0.92236 0.88798 0.87505 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.11 -1.81 5.22 30.59 0.16 -1.65 16 3 C -0.13 -1.80 5.70 29.85 0.17 -1.63 16 4 C 0.50 11.57 7.79 87.66 0.68 12.25 16 5 O -0.59 -19.43 15.65 -3.03 -0.05 -19.48 16 6 N -0.71 -14.69 5.08 -442.34 -2.25 -16.93 16 7 C 0.16 4.25 2.41 45.03 0.11 4.36 16 8 C -0.12 -4.17 5.66 30.68 0.17 -4.00 16 9 C 0.12 5.16 6.41 86.36 0.55 5.72 16 10 N -0.64 -29.61 2.97 -823.99 -2.45 -32.06 16 11 C 0.54 31.58 7.61 86.36 0.66 32.24 16 12 O -0.64 -43.58 14.48 -4.30 -0.06 -43.64 16 13 C -0.57 -31.33 8.88 24.83 0.22 -31.10 16 14 H 0.10 4.76 5.64 -2.91 -0.02 4.74 16 15 C 0.03 1.49 5.50 85.30 0.47 1.96 16 16 N -0.83 -50.74 11.84 21.84 0.26 -50.48 16 17 Si 1.00 39.92 29.56 68.60 2.03 41.95 16 18 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 21 C 0.12 4.03 6.35 86.36 0.55 4.58 16 22 C -0.13 -3.20 5.55 30.67 0.17 -3.03 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 27 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.42 5.72 8.60 -92.71 -0.80 4.92 16 31 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 2.42 7.04 -2.39 -0.02 2.41 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 3.31 5.30 -2.39 -0.01 3.30 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -82.03 326.11 2.35 -79.69 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.24 Total: 22.14 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 4.63 Total: 18.82 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -4.44 Total: -99.48 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -0.11 Total: -63.12 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -82.03 2.35 -79.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169889668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.420 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds