Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.08010 * 119.99495 * 87.46656 * 5 3 2 7 7 C 1.37874 * 120.00506 * 267.46474 * 5 3 2 8 8 N 1.31513 * 120.00322 * 176.06898 * 7 5 3 9 9 Si 1.86801 * 119.99737 * 356.07254 * 7 5 3 10 10 H 1.48506 * 109.46858 * 275.08466 * 9 7 5 11 11 H 1.48500 * 109.47138 * 35.08466 * 9 7 5 12 12 H 1.48496 * 109.47034 * 155.08793 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21276 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.45752 * 117.94482 * 269.73923 * 17 16 14 19 19 C 1.53106 * 110.38608 * 160.74427 * 18 17 16 20 20 C 1.53343 * 108.52995 * 51.11071 * 19 18 17 21 21 C 1.53063 * 108.42741 * 292.31396 * 20 19 18 22 22 C 1.33351 * 117.94996 * 89.99935 * 17 16 14 23 23 O 1.21287 * 118.24301 * 2.24343 * 22 17 16 24 24 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 29 29 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 31 31 H 1.08999 * 109.46936 * 299.99961 * 16 14 13 32 32 H 1.08995 * 109.46903 * 60.00037 * 16 14 13 33 33 H 1.09002 * 109.30207 * 281.23667 * 18 17 16 34 34 H 1.09001 * 109.30448 * 40.61734 * 18 17 16 35 35 H 1.08997 * 109.80600 * 291.32593 * 19 18 17 36 36 H 1.08997 * 109.67860 * 170.82994 * 19 18 17 37 37 H 1.09000 * 109.67726 * 172.57351 * 20 19 18 38 38 H 1.09007 * 109.70062 * 52.06101 * 20 19 18 39 39 H 1.09002 * 109.40204 * 288.76774 * 21 20 19 40 40 H 1.09005 * 109.33246 * 168.98124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4622 1.5183 9 14 3.0406 1.7713 2.8984 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3345 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 7 -1.2949 3.8620 -2.5713 18 6 -2.4018 2.9975 -2.9609 19 6 -3.7126 3.5020 -2.3515 20 6 -3.8593 4.9932 -2.6774 21 6 -2.7778 5.7636 -1.9160 22 6 -1.4421 5.1098 -2.1247 23 8 -0.4436 5.7512 -1.8740 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8280 1.5272 2.3972 30 1 2.2932 2.1156 -1.9977 31 1 0.7586 4.1432 -2.8906 32 1 0.1051 2.6014 -3.4938 33 1 -2.4859 2.9875 -4.0476 34 1 -2.2091 1.9843 -2.6082 35 1 -3.6944 3.3641 -1.2704 36 1 -4.5512 2.9505 -2.7765 37 1 -4.8447 5.3413 -2.3677 38 1 -3.7352 5.1491 -3.7491 39 1 -3.0168 5.7675 -0.8525 40 1 -2.7400 6.7895 -2.2824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183867692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = -82.888497 kcal Electronic energy + Delta-G solvation = -21519.791227 eV Core-core repulsion = 18334.067321 eV Total energy + Delta-G solvation = -3185.723906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59080 -38.76755 -36.43176 -35.23391 -33.90933 -32.32921 -31.50563 -29.74426 -28.25132 -26.87513 -24.45709 -22.86402 -22.39208 -20.56496 -19.52420 -18.62369 -17.50234 -16.68588 -16.48177 -16.20138 -15.35721 -15.26491 -14.68161 -14.26608 -14.16492 -13.85651 -13.57864 -13.33274 -13.00153 -12.77177 -12.63810 -11.95035 -11.90915 -11.81895 -11.53990 -11.37432 -11.14400 -11.10998 -10.92508 -10.70113 -10.66182 -9.98625 -9.83916 -9.61969 -9.43690 -9.17592 -8.69606 -8.47118 -7.97500 -6.20908 -4.24131 2.70668 2.99348 3.27747 3.33063 3.36639 3.43831 4.13543 4.35493 4.48402 4.56827 4.58934 4.66914 5.12951 5.19474 5.21183 5.30192 5.38747 5.48841 5.54575 5.61049 5.66611 5.71114 5.76653 6.02458 6.03705 6.06374 6.22838 6.34266 6.64381 6.76547 6.97965 6.99675 7.28672 7.39845 7.50332 7.59070 8.15525 8.27111 8.60075 8.79583 9.02395 9.41591 10.90916 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027462 B = 0.005263 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.343685 B = 5318.396970 C = 5551.043174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.239 3.761 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.260 1.260 12 H -0.286 1.286 13 N -0.702 5.702 14 C 0.488 3.512 15 O -0.546 6.546 16 C 0.084 3.916 17 N -0.583 5.583 18 C 0.118 3.882 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.132 4.132 22 C 0.520 3.480 23 O -0.551 6.551 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.267 0.733 30 H 0.393 0.607 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 2.674 -11.114 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.526 5.526 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.184 1.184 12 H -0.212 1.212 13 N -0.351 5.351 14 C 0.271 3.729 15 O -0.425 6.425 16 C -0.043 4.043 17 N -0.315 5.315 18 C -0.005 4.005 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.172 4.172 22 C 0.309 3.691 23 O -0.429 6.429 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.856 2.993 -10.165 20.764 hybrid contribution -0.068 -0.004 0.563 0.567 sum -17.925 2.989 -9.603 20.553 Atomic orbital electron populations 1.21881 0.97529 0.98638 1.01880 1.22085 0.93576 0.99569 1.01193 1.19115 0.95484 0.88888 0.82868 0.93391 1.21017 0.88684 1.52212 0.94958 0.90328 1.24908 0.94853 0.93617 0.98846 1.69878 1.09604 1.48760 1.24345 0.86925 0.81224 0.79554 0.82393 1.19885 1.18388 1.21223 1.46509 1.14384 1.56032 1.18196 1.20856 0.83007 0.79242 0.89749 1.90637 1.51120 1.59627 1.41119 1.21446 0.85630 1.00376 0.96883 1.46821 1.06498 1.13284 1.64920 1.21411 0.85867 0.94539 0.98716 1.21894 0.96686 0.96197 1.02571 1.21657 0.98794 0.94984 1.00543 1.21627 0.91757 1.00456 1.03312 1.20085 0.91782 0.81135 0.76107 1.90737 1.39417 1.62242 1.50540 0.93330 0.95201 0.93224 0.93000 0.92154 0.92268 0.77400 0.86913 0.88150 0.91779 0.90513 0.90436 0.89949 0.90692 0.91220 0.88243 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.53 37.16 0.32 -2.47 16 2 C -0.13 -2.71 5.54 -26.73 -0.15 -2.86 16 3 C 0.24 5.72 1.82 -69.08 -0.13 5.59 16 4 H 0.05 1.28 4.92 -51.93 -0.26 1.03 16 5 C -0.53 -14.45 9.05 -34.44 -0.31 -14.76 16 6 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 7 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.87 22.15 26.69 -169.99 -4.54 17.61 16 10 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.44 6.88 56.52 0.39 -6.05 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.70 -14.14 5.03 -54.93 -0.28 -14.42 16 14 C 0.49 9.35 6.48 -10.98 -0.07 9.27 16 15 O -0.55 -12.19 13.56 5.56 0.08 -12.11 16 16 C 0.08 1.21 5.70 -5.19 -0.03 1.18 16 17 N -0.58 -8.02 2.30 -176.22 -0.41 -8.43 16 18 C 0.12 1.17 6.33 -4.39 -0.03 1.14 16 19 C -0.14 -1.14 6.03 -26.50 -0.16 -1.30 16 20 C -0.12 -0.94 6.03 -26.52 -0.16 -1.10 16 21 C -0.13 -1.43 6.03 -28.10 -0.17 -1.60 16 22 C 0.52 8.03 7.44 -11.87 -0.09 7.94 16 23 O -0.55 -11.00 16.18 5.55 0.09 -10.91 16 24 H 0.05 0.92 5.63 -51.93 -0.29 0.63 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 6.94 8.59 -40.82 -0.35 6.59 16 31 H 0.11 1.72 7.13 -51.93 -0.37 1.35 16 32 H 0.10 1.07 8.01 -51.93 -0.42 0.65 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 8.13 -51.92 -0.42 0.06 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -34.82 321.05 -6.81 -41.64 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.30 Total: 4.31 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.07 Total: 3.31 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.09 Total: -48.68 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.54 Total: 17.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.82 -6.81 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183867692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.250 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds