Wall clock time and date at job start Mon Mar 30 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.08010 * 119.99495 * 87.46656 * 5 3 2 7 7 C 1.37874 * 120.00506 * 267.46474 * 5 3 2 8 8 N 1.31513 * 120.00322 * 176.06898 * 7 5 3 9 9 Si 1.86801 * 119.99737 * 356.07254 * 7 5 3 10 10 H 1.48506 * 109.46858 * 275.08466 * 9 7 5 11 11 H 1.48500 * 109.47138 * 35.08466 * 9 7 5 12 12 H 1.48496 * 109.47034 * 155.08793 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21276 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.45752 * 117.94482 * 269.73923 * 17 16 14 19 19 C 1.53106 * 110.38608 * 160.74427 * 18 17 16 20 20 C 1.53343 * 108.52995 * 51.11071 * 19 18 17 21 21 C 1.53063 * 108.42741 * 292.31396 * 20 19 18 22 22 C 1.33351 * 117.94996 * 89.99935 * 17 16 14 23 23 O 1.21287 * 118.24301 * 2.24343 * 22 17 16 24 24 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 29 29 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 31 31 H 1.08999 * 109.46936 * 299.99961 * 16 14 13 32 32 H 1.08995 * 109.46903 * 60.00037 * 16 14 13 33 33 H 1.09002 * 109.30207 * 281.23667 * 18 17 16 34 34 H 1.09001 * 109.30448 * 40.61734 * 18 17 16 35 35 H 1.08997 * 109.80600 * 291.32593 * 19 18 17 36 36 H 1.08997 * 109.67860 * 170.82994 * 19 18 17 37 37 H 1.09000 * 109.67726 * 172.57351 * 20 19 18 38 38 H 1.09007 * 109.70062 * 52.06101 * 20 19 18 39 39 H 1.09002 * 109.40204 * 288.76774 * 21 20 19 40 40 H 1.09005 * 109.33246 * 168.98124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4622 1.5183 9 14 3.0406 1.7713 2.8984 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3345 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 7 -1.2949 3.8620 -2.5713 18 6 -2.4018 2.9975 -2.9609 19 6 -3.7126 3.5020 -2.3515 20 6 -3.8593 4.9932 -2.6774 21 6 -2.7778 5.7636 -1.9160 22 6 -1.4421 5.1098 -2.1247 23 8 -0.4436 5.7512 -1.8740 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8280 1.5272 2.3972 30 1 2.2932 2.1156 -1.9977 31 1 0.7586 4.1432 -2.8906 32 1 0.1051 2.6014 -3.4938 33 1 -2.4859 2.9875 -4.0476 34 1 -2.2091 1.9843 -2.6082 35 1 -3.6944 3.3641 -1.2704 36 1 -4.5512 2.9505 -2.7765 37 1 -4.8447 5.3413 -2.3677 38 1 -3.7352 5.1491 -3.7491 39 1 -3.0168 5.7675 -0.8525 40 1 -2.7400 6.7895 -2.2824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183867692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:40 Heat of formation + Delta-G solvation = -108.089829 kcal Electronic energy + Delta-G solvation = -21520.884039 eV Core-core repulsion = 18334.067321 eV Total energy + Delta-G solvation = -3186.816717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75534 -40.30520 -37.51246 -36.94198 -34.94754 -34.41171 -33.15940 -30.62501 -29.85980 -28.39660 -25.33967 -24.66954 -23.40604 -22.08563 -21.26208 -19.58494 -19.32924 -17.94842 -17.81506 -17.56648 -17.04024 -16.49862 -16.18591 -15.85543 -15.10958 -15.02300 -14.82901 -14.66339 -14.33726 -14.16030 -14.07122 -13.78935 -13.68802 -13.03365 -12.95874 -12.69773 -12.56884 -12.37219 -12.19932 -11.89308 -11.83591 -11.79749 -11.69406 -11.23653 -10.92505 -10.87874 -10.71467 -9.72313 -9.68331 -8.42203 -6.46826 1.23370 1.28451 1.38687 1.52986 1.79799 1.96607 2.22964 2.61953 3.01314 3.61948 3.85565 3.91340 3.95275 4.00822 4.22410 4.30995 4.39680 4.42894 4.53420 4.55458 4.58667 4.66151 4.80805 4.86826 4.96137 5.06082 5.09385 5.15192 5.25051 5.25742 5.33405 5.40857 5.41599 5.55371 5.76974 6.11652 6.45103 6.57939 6.90194 7.14115 7.19116 7.48623 8.73064 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027462 B = 0.005263 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.343685 B = 5318.396970 C = 5551.043174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.244 3.756 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.922 3.078 10 H -0.284 1.284 11 H -0.253 1.253 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.485 3.515 15 O -0.579 6.579 16 C 0.089 3.911 17 N -0.582 5.582 18 C 0.108 3.892 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.506 3.494 23 O -0.610 6.610 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.405 0.595 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 2.039 -12.829 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.139 3.861 4 H 0.038 0.962 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.748 3.252 10 H -0.210 1.210 11 H -0.177 1.177 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.271 3.729 15 O -0.460 6.460 16 C -0.038 4.038 17 N -0.312 5.312 18 C -0.013 4.013 19 C -0.171 4.171 20 C -0.150 4.150 21 C -0.170 4.170 22 C 0.297 3.703 23 O -0.493 6.493 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.240 0.760 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.743 2.325 -11.919 24.036 hybrid contribution 0.812 0.194 1.020 1.318 sum -19.931 2.520 -10.900 22.856 Atomic orbital electron populations 1.21733 0.95595 1.00277 1.01046 1.21970 0.95199 0.97597 1.01305 1.18850 0.93086 0.90376 0.83741 0.96223 1.21268 0.90459 1.50704 0.94087 0.92351 1.25540 0.95694 0.93971 1.01382 1.69967 1.10966 1.50846 1.25078 0.86131 0.80204 0.78739 0.80167 1.21043 1.17683 1.19948 1.46288 1.15420 1.56324 1.17312 1.21653 0.81935 0.78289 0.91033 1.90622 1.51958 1.60661 1.42730 1.21451 0.86325 1.00707 0.95275 1.47062 1.07139 1.13218 1.63802 1.21774 0.85233 0.93409 1.00911 1.21923 0.96906 0.97144 1.01167 1.21659 0.98500 0.93842 1.00953 1.21687 0.90399 1.01211 1.03655 1.20996 0.92782 0.81506 0.75028 1.90703 1.41583 1.63827 1.53147 0.92764 0.92225 0.95447 0.91506 0.93432 0.92064 0.75976 0.87702 0.83444 0.88244 0.91140 0.92862 0.86723 0.88305 0.89602 0.88757 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.53 71.98 0.61 -4.21 16 2 C -0.12 -5.13 5.54 30.59 0.17 -4.96 16 3 C 0.24 11.66 1.82 44.24 0.08 11.75 16 4 H 0.02 1.07 4.92 -2.39 -0.01 1.06 16 5 C -0.53 -29.13 9.05 25.60 0.23 -28.90 16 6 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 7 C 0.03 2.00 5.47 84.65 0.46 2.46 16 8 N -0.93 -56.73 13.96 21.45 0.30 -56.44 16 9 Si 0.92 46.48 26.69 68.60 1.83 48.31 16 10 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.25 -12.34 6.88 99.48 0.68 -11.66 16 12 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.70 -27.98 5.03 -446.10 -2.24 -30.22 16 14 C 0.48 18.20 6.48 87.66 0.57 18.77 16 15 O -0.58 -25.70 13.56 -3.02 -0.04 -25.74 16 16 C 0.09 2.44 5.70 85.63 0.49 2.93 16 17 N -0.58 -14.91 2.30 -830.62 -1.91 -16.83 16 18 C 0.11 1.78 6.33 86.56 0.55 2.33 16 19 C -0.13 -1.78 6.03 30.74 0.19 -1.60 16 20 C -0.11 -1.31 6.03 30.73 0.19 -1.13 16 21 C -0.13 -2.61 6.03 29.70 0.18 -2.44 16 22 C 0.51 15.27 7.44 87.71 0.65 15.93 16 23 O -0.61 -24.82 16.18 -3.05 -0.05 -24.87 16 24 H 0.05 1.94 5.63 -2.39 -0.01 1.93 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.03 1.12 7.88 -2.39 -0.02 1.10 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.05 2.11 7.90 -2.38 -0.02 2.09 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.41 14.04 8.59 -92.71 -0.80 13.25 16 31 H 0.10 3.12 7.13 -2.39 -0.02 3.10 16 32 H 0.15 2.60 8.01 -2.39 -0.02 2.59 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 35 H 0.05 0.98 8.12 -2.39 -0.02 0.97 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.78 8.13 -2.38 -0.02 0.76 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -78.41 321.05 2.46 -75.94 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.21 Total: 18.91 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.37 Total: 10.93 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.86 Total: -103.49 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.09 Total: -50.61 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.83 Total: 48.31 kcal Total: -78.41 2.46 -75.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183867692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -78.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds