Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.85535 * 297.66563 * 16 14 13 18 18 C 1.54632 * 110.96864 * 61.44934 * 16 14 13 19 19 C 1.51282 * 104.19171 * 142.91653 * 18 16 14 20 20 O 1.21281 * 124.93962 * 163.70810 * 19 18 16 21 21 N 1.34420 * 110.11640 * 343.75234 * 19 18 16 22 22 C 1.46504 * 124.34743 * 179.57164 * 21 19 18 23 23 C 1.52992 * 109.47136 * 89.97230 * 22 21 19 24 24 C 1.46760 * 111.30098 * 359.59212 * 21 19 18 25 25 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 27 27 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 30 30 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 31 31 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 32 32 H 1.08995 * 110.48878 * 261.59320 * 18 16 14 33 33 H 1.08998 * 110.48615 * 24.11321 * 18 16 14 34 34 H 1.08999 * 109.46759 * 209.97458 * 22 21 19 35 35 H 1.08997 * 109.47043 * 329.97172 * 22 21 19 36 36 H 1.08999 * 109.47482 * 299.99785 * 23 22 21 37 37 H 1.09007 * 109.47298 * 60.00031 * 23 22 21 38 38 H 1.09008 * 109.47234 * 179.97438 * 23 22 21 39 39 H 1.09006 * 110.24530 * 258.01679 * 24 21 19 40 40 H 1.09001 * 110.24549 * 136.02326 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3386 2.6545 17 1 0.0206 2.6244 3.4778 18 6 0.9750 4.5263 2.9706 19 6 0.0618 5.5696 3.5758 20 8 0.4333 6.5329 4.2122 21 7 -1.2213 5.2731 3.3065 22 6 -2.3655 6.0719 3.7526 23 6 -2.6898 7.1316 2.6979 24 6 -1.3288 4.0460 2.5086 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8292 -0.0611 -2.9498 31 1 2.2734 2.1266 1.9964 32 1 1.7404 4.2277 3.6868 33 1 1.4348 4.9029 2.0569 34 1 -3.2295 5.4224 3.8928 35 1 -2.1217 6.5608 4.6958 36 1 -1.8258 7.7812 2.5577 37 1 -2.9337 6.6427 1.7546 38 1 -3.5415 7.7257 3.0296 39 1 -1.5168 4.2911 1.4632 40 1 -2.1257 3.4119 2.8973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183892654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -82.794234 kcal Electronic energy + Delta-G solvation = -21086.398893 eV Core-core repulsion = 17900.679075 eV Total energy + Delta-G solvation = -3185.719818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69829 -38.88590 -36.35961 -35.12170 -33.94498 -32.40372 -31.03420 -29.62302 -27.68044 -27.01077 -24.13419 -23.14633 -22.47290 -20.17333 -19.36735 -19.32902 -17.61896 -16.74787 -16.33977 -15.58860 -15.43672 -15.04047 -14.67262 -14.29356 -14.00515 -13.63998 -13.52140 -13.40687 -12.90341 -12.71273 -12.32854 -12.13642 -12.05952 -11.60777 -11.41407 -11.30838 -11.29217 -11.16399 -11.01279 -10.85040 -10.37543 -10.22349 -9.89565 -9.68365 -9.13350 -9.07736 -8.77448 -8.54009 -7.91231 -6.16150 -4.25928 2.56032 2.89316 3.20696 3.23869 3.29436 3.30657 3.87920 4.29010 4.33937 4.46285 4.85057 4.93488 5.00762 5.05312 5.15504 5.20766 5.42766 5.47792 5.55389 5.63127 5.69060 5.80365 5.95417 6.03504 6.33950 6.39643 6.46750 6.60031 6.97865 7.03225 7.13358 7.29914 7.36735 7.56486 7.67212 7.84418 8.12764 8.13306 8.57295 8.71542 9.02119 9.41543 10.89044 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027005 B = 0.004550 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.589305 B = 6152.968858 C = 6790.878198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.544 6.544 16 C -0.126 4.126 17 H 0.111 0.889 18 C -0.145 4.145 19 C 0.521 3.479 20 O -0.537 6.537 21 N -0.620 5.620 22 C 0.123 3.877 23 C -0.171 4.171 24 C 0.119 3.881 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 5.505 10.244 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.148 4.148 17 H 0.130 0.870 18 C -0.186 4.186 19 C 0.309 3.691 20 O -0.414 6.414 21 N -0.355 5.355 22 C 0.001 3.999 23 C -0.229 4.229 24 C -0.004 4.004 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.512 5.909 9.716 14.826 hybrid contribution 1.263 -0.157 0.200 1.288 sum -8.250 5.752 9.915 14.123 Atomic orbital electron populations 1.21840 0.98354 0.98083 1.01160 1.21942 0.92597 0.99790 1.02371 1.18812 0.94261 0.89201 0.80858 0.93229 1.21191 0.90668 1.39259 1.06371 0.92084 1.24873 0.98599 0.94729 0.95362 1.69877 1.35263 1.37445 1.09333 0.86520 0.84837 0.78361 0.77472 1.20144 1.21142 1.20161 1.46489 1.14269 1.55423 1.18765 1.19806 0.83115 0.79429 0.88078 1.90686 1.51454 1.60003 1.40144 1.22303 0.95770 0.97566 0.99159 0.87049 1.22350 0.98188 0.94113 1.03918 1.20857 0.83451 0.85918 0.78876 1.90705 1.79004 1.30629 1.41064 1.48398 1.06523 1.26772 1.53796 1.21321 0.87619 0.93081 0.97854 1.22170 1.01955 0.99137 0.99663 1.21986 0.96660 0.84451 0.97331 0.94337 0.93130 0.95842 0.88253 0.94991 0.92473 0.77803 0.87304 0.86997 0.90330 0.90153 0.92228 0.92119 0.91537 0.88989 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.39 2.24 -69.08 -0.15 6.23 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.37 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -13.09 4.97 -54.93 -0.27 -13.36 16 14 C 0.51 8.79 5.64 -10.98 -0.06 8.73 16 15 O -0.54 -11.19 12.71 5.56 0.07 -11.12 16 16 C -0.13 -1.56 3.54 -90.14 -0.32 -1.88 16 17 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.15 -1.80 6.37 -26.74 -0.17 -1.97 16 19 C 0.52 7.35 8.02 -10.86 -0.09 7.27 16 20 O -0.54 -9.33 17.60 5.56 0.10 -9.23 16 21 N -0.62 -7.42 2.93 -172.42 -0.51 -7.93 16 22 C 0.12 1.19 6.65 -4.04 -0.03 1.17 16 23 C -0.17 -1.60 10.24 37.15 0.38 -1.22 16 24 C 0.12 1.39 6.66 -3.13 -0.02 1.37 16 25 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.28 8.53 -40.82 -0.35 5.93 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 1.50 7.89 -51.93 -0.41 1.09 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.09 1.25 7.06 -51.93 -0.37 0.88 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -30.37 325.46 -7.07 -37.44 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.28 Total: 5.70 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.69 Total: 1.87 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.15 Total: -44.65 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.17 Total: -20.36 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.37 -7.07 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183892654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.353 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds