Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.85535 * 297.66563 * 16 14 13 18 18 C 1.54632 * 110.96864 * 61.44934 * 16 14 13 19 19 C 1.51282 * 104.19171 * 142.91653 * 18 16 14 20 20 O 1.21281 * 124.93962 * 163.70810 * 19 18 16 21 21 N 1.34420 * 110.11640 * 343.75234 * 19 18 16 22 22 C 1.46504 * 124.34743 * 179.57164 * 21 19 18 23 23 C 1.52992 * 109.47136 * 89.97230 * 22 21 19 24 24 C 1.46760 * 111.30098 * 359.59212 * 21 19 18 25 25 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 27 27 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 30 30 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 31 31 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 32 32 H 1.08995 * 110.48878 * 261.59320 * 18 16 14 33 33 H 1.08998 * 110.48615 * 24.11321 * 18 16 14 34 34 H 1.08999 * 109.46759 * 209.97458 * 22 21 19 35 35 H 1.08997 * 109.47043 * 329.97172 * 22 21 19 36 36 H 1.08999 * 109.47482 * 299.99785 * 23 22 21 37 37 H 1.09007 * 109.47298 * 60.00031 * 23 22 21 38 38 H 1.09008 * 109.47234 * 179.97438 * 23 22 21 39 39 H 1.09006 * 110.24530 * 258.01679 * 24 21 19 40 40 H 1.09001 * 110.24549 * 136.02326 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3386 2.6545 17 1 0.0206 2.6244 3.4778 18 6 0.9750 4.5263 2.9706 19 6 0.0618 5.5696 3.5758 20 8 0.4333 6.5329 4.2122 21 7 -1.2213 5.2731 3.3065 22 6 -2.3655 6.0719 3.7526 23 6 -2.6898 7.1316 2.6979 24 6 -1.3288 4.0460 2.5086 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8292 -0.0611 -2.9498 31 1 2.2734 2.1266 1.9964 32 1 1.7404 4.2277 3.6868 33 1 1.4348 4.9029 2.0569 34 1 -3.2295 5.4224 3.8928 35 1 -2.1217 6.5608 4.6958 36 1 -1.8258 7.7812 2.5577 37 1 -2.9337 6.6427 1.7546 38 1 -3.5415 7.7257 3.0296 39 1 -1.5168 4.2911 1.4632 40 1 -2.1257 3.4119 2.8973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183892654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -103.006472 kcal Electronic energy + Delta-G solvation = -21087.275362 eV Core-core repulsion = 17900.679075 eV Total energy + Delta-G solvation = -3186.596286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82310 -40.29866 -37.57081 -36.78030 -34.96077 -34.19171 -32.69361 -30.66139 -28.91721 -28.62879 -25.46667 -24.51968 -23.69109 -21.76382 -20.94120 -20.36684 -19.05806 -17.89132 -17.75410 -17.16275 -16.76666 -16.36138 -16.12320 -15.79941 -15.12156 -14.83808 -14.58268 -14.54018 -14.39951 -14.17494 -13.69032 -13.35244 -13.22730 -13.11298 -12.94219 -12.86329 -12.63819 -12.45379 -12.32821 -12.15021 -12.02928 -11.94956 -11.52387 -11.06038 -11.01300 -10.58670 -10.44712 -9.78200 -9.57189 -8.13323 -6.29790 1.46909 1.47221 1.48013 1.55413 1.82669 1.95170 2.38195 2.62734 3.16515 3.26717 3.42479 3.90448 3.91424 4.12517 4.25358 4.31135 4.47403 4.56221 4.56379 4.63754 4.64498 4.77921 4.81982 4.83604 4.93236 4.98279 5.12920 5.25290 5.33062 5.49527 5.55921 5.61509 5.66702 5.85591 5.96617 6.03232 6.22366 6.78906 7.01791 7.07676 7.37378 7.61288 8.91385 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027005 B = 0.004550 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.589305 B = 6152.968858 C = 6790.878198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.512 3.488 15 O -0.579 6.579 16 C -0.109 4.109 17 H 0.148 0.852 18 C -0.141 4.141 19 C 0.516 3.484 20 O -0.575 6.575 21 N -0.614 5.614 22 C 0.116 3.884 23 C -0.167 4.167 24 C 0.121 3.879 25 H 0.050 0.950 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 5.197 12.296 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.460 6.460 16 C -0.131 4.131 17 H 0.166 0.834 18 C -0.181 4.181 19 C 0.304 3.696 20 O -0.456 6.456 21 N -0.347 5.347 22 C -0.005 4.005 23 C -0.225 4.225 24 C -0.002 4.002 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.853 5.605 11.798 16.361 hybrid contribution 1.286 -0.019 -0.471 1.369 sum -8.567 5.586 11.327 15.261 Atomic orbital electron populations 1.21682 0.96709 0.99165 1.00516 1.21787 0.93994 0.99097 1.01252 1.18349 0.93375 0.89268 0.81513 0.98222 1.21583 0.91719 1.38734 1.06569 0.91024 1.25695 1.02841 0.94527 0.95180 1.70033 1.36942 1.38416 1.09842 0.85516 0.79730 0.78323 0.77471 1.18967 1.21439 1.19890 1.46224 1.15409 1.55629 1.17629 1.20524 0.81931 0.78460 0.89269 1.90683 1.52338 1.61031 1.41963 1.22216 0.95943 0.97808 0.97091 0.83403 1.22338 0.98474 0.93520 1.03771 1.21084 0.84339 0.85645 0.78507 1.90685 1.79694 1.32191 1.42997 1.48515 1.06559 1.26775 1.52822 1.21576 0.87814 0.93538 0.97553 1.22140 1.01816 0.98954 0.99625 1.21997 0.97115 0.84599 0.96464 0.93072 0.95586 0.93805 0.91340 0.93968 0.92718 0.76036 0.85037 0.88376 0.87198 0.90481 0.94686 0.92434 0.89175 0.91010 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.52 71.98 0.61 -4.49 16 2 C -0.12 -5.66 5.45 30.60 0.17 -5.49 16 3 C 0.28 13.33 2.24 44.25 0.10 13.43 16 4 H 0.00 -0.01 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -27.66 8.73 25.60 0.22 -27.43 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -50.93 11.29 21.45 0.24 -50.69 16 9 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 N -0.70 -25.42 4.97 -446.10 -2.22 -27.64 16 14 C 0.51 16.96 5.64 87.66 0.49 17.46 16 15 O -0.58 -23.82 12.71 -3.03 -0.04 -23.86 16 16 C -0.11 -2.40 3.54 -10.48 -0.04 -2.44 16 17 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.14 -3.22 6.37 30.59 0.19 -3.02 16 19 C 0.52 13.82 8.02 87.90 0.71 14.53 16 20 O -0.58 -19.66 17.60 -3.03 -0.05 -19.71 16 21 N -0.61 -13.40 2.93 -818.01 -2.40 -15.80 16 22 C 0.12 1.99 6.65 86.38 0.57 2.56 16 23 C -0.17 -2.90 10.24 71.98 0.74 -2.17 16 24 C 0.12 2.53 6.66 86.83 0.58 3.11 16 25 H 0.05 1.95 5.65 -2.39 -0.01 1.94 16 26 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 3.62 5.95 -2.39 -0.01 3.61 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.40 12.23 8.53 -92.71 -0.79 11.44 16 32 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.10 2.56 7.89 -2.39 -0.02 2.54 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.86 7.06 -2.38 -0.02 1.84 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.79 325.46 2.60 -65.19 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.24 Total: 21.94 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.80 Total: 7.42 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -4.37 Total: -94.13 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.09 Total: -43.57 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -67.79 2.60 -65.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183892654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.813 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds