Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 6 6 H 1.07999 * 119.99742 * 119.99976 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00211 * 5 3 2 8 8 N 1.31519 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47420 * 60.00025 * 9 7 5 11 11 H 1.48503 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47539 * 299.99718 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 14 14 C 1.34777 * 120.00075 * 84.99755 * 13 3 2 15 15 O 1.21287 * 119.99865 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00179 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.67105 * 299.50276 * 16 14 13 18 18 C 1.53343 * 109.67218 * 178.97094 * 16 14 13 19 19 C 1.52910 * 108.68657 * 172.75106 * 18 16 14 20 20 N 1.45756 * 110.49545 * 50.71756 * 19 18 16 21 21 C 1.46501 * 117.94379 * 160.94226 * 20 19 18 22 22 C 1.33350 * 124.10699 * 340.96435 * 20 19 18 23 23 O 1.21288 * 118.24772 * 182.17584 * 22 20 19 24 24 C 1.50178 * 123.50978 * 2.20297 * 22 20 19 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 0.96997 * 119.99545 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00274 * 264.99726 * 13 3 2 32 32 H 1.08999 * 109.60292 * 292.48664 * 18 16 14 33 33 H 1.08999 * 109.60995 * 52.98007 * 18 16 14 34 34 H 1.09001 * 109.28470 * 290.41845 * 19 18 16 35 35 H 1.08988 * 109.14566 * 170.93708 * 19 18 16 36 36 H 1.09000 * 109.46873 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47473 * 300.01844 * 21 20 19 38 38 H 1.09001 * 109.46953 * 60.02971 * 21 20 19 39 39 H 1.09004 * 109.39974 * 222.28453 * 24 22 20 40 40 H 1.09002 * 109.33446 * 102.49792 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4060 0.3374 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.5005 2.2797 1.3809 11 1 6.3977 0.2166 2.6505 12 1 6.5966 0.1450 0.2345 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3393 2.6327 -0.4342 16 6 0.0368 3.3386 -2.6546 17 1 0.7210 4.1604 -2.8654 18 6 -1.3946 3.8754 -2.5347 19 6 -1.7110 4.7086 -3.7772 20 7 -1.3901 3.9623 -4.9874 21 6 -2.0016 4.3983 -6.2453 22 6 -0.5752 2.9074 -5.0214 23 8 -0.3508 2.3896 -6.0951 24 6 0.0793 2.3256 -3.8013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.8291 -0.0604 2.9503 31 1 2.2720 2.1231 -1.9978 32 1 -2.0933 3.0416 -2.4664 33 1 -1.4780 4.4994 -1.6449 34 1 -1.1240 5.6268 -3.7540 35 1 -2.7717 4.9591 -3.7791 36 1 -1.6700 3.7483 -7.0550 37 1 -3.0869 4.3461 -6.1590 38 1 -1.7029 5.4248 -6.4579 39 1 1.1165 2.0799 -4.0292 40 1 -0.4505 1.4204 -3.5046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183915546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = -84.607660 kcal Electronic energy + Delta-G solvation = -21290.049298 eV Core-core repulsion = 18104.250844 eV Total energy + Delta-G solvation = -3185.798454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72477 -39.04806 -36.44580 -35.12397 -34.02098 -32.36425 -30.93352 -29.74399 -27.65527 -26.76701 -24.69262 -23.41101 -22.50973 -20.17579 -19.35418 -18.74777 -17.41337 -16.62931 -16.46267 -15.95895 -15.64783 -15.16453 -14.77977 -14.41558 -14.18337 -13.68317 -13.39256 -13.25733 -12.82665 -12.69988 -12.42719 -12.03472 -11.80986 -11.76401 -11.45851 -11.24837 -11.07741 -10.98319 -10.93508 -10.83545 -10.35115 -10.18697 -10.00771 -9.64443 -9.07963 -8.93244 -8.89610 -8.51145 -7.86043 -6.13960 -4.23564 2.54661 2.87276 3.24640 3.28849 3.30330 3.31838 3.94599 4.33906 4.45284 4.55973 4.76464 4.82834 5.12059 5.16829 5.17532 5.24484 5.30137 5.35289 5.55631 5.66125 5.71618 5.80372 5.95684 6.14655 6.21187 6.37144 6.43039 6.63486 7.01540 7.16737 7.28121 7.33864 7.41775 7.59654 7.70634 7.87826 8.04288 8.16324 8.62872 8.74999 9.08362 9.43883 10.91243 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.004497 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.587828 B = 6225.359668 C = 6518.364671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.507 3.493 15 O -0.545 6.545 16 C -0.115 4.115 17 H 0.099 0.901 18 C -0.114 4.114 19 C 0.114 3.886 20 N -0.609 5.609 21 C 0.069 3.931 22 C 0.522 3.478 23 O -0.557 6.557 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 7.838 -11.395 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.424 6.424 16 C -0.136 4.136 17 H 0.117 0.883 18 C -0.153 4.153 19 C -0.009 4.009 20 N -0.343 5.343 21 C -0.074 4.074 22 C 0.311 3.689 23 O -0.436 6.436 24 C -0.164 4.164 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.197 7.424 -11.039 16.173 hybrid contribution 1.296 0.045 -0.167 1.307 sum -7.901 7.469 -11.206 15.614 Atomic orbital electron populations 1.21835 0.98384 0.98040 1.01128 1.21937 0.92571 0.99834 1.02344 1.18789 0.94188 0.89187 0.80976 0.93285 1.21196 0.90737 1.39169 1.06306 0.92154 1.24876 0.98579 0.94765 0.95382 1.69883 1.35225 1.37520 1.09315 0.86521 0.84885 0.78307 0.77470 1.20210 1.21141 1.20144 1.46529 1.14559 1.55666 1.18547 1.20077 0.82890 0.79505 0.88462 1.90678 1.51464 1.59874 1.40403 1.21495 0.98979 0.98921 0.94252 0.88302 1.21697 0.95371 1.00937 0.97249 1.21490 1.01226 0.94700 0.83498 1.47242 1.46700 1.30734 1.09578 1.21756 0.97580 1.00576 0.87450 1.20136 0.78321 0.79443 0.90972 1.90695 1.62395 1.59858 1.30609 1.21644 1.03529 0.99614 0.91585 0.93164 0.94369 0.95871 0.94991 0.88298 0.92502 0.77956 0.90342 0.88503 0.91431 0.90364 0.89091 0.92289 0.92281 0.87457 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.15 0.32 -2.63 16 2 C -0.13 -3.03 5.45 -26.74 -0.15 -3.18 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.30 11.29 55.43 0.63 -23.67 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -13.65 4.93 -54.93 -0.27 -13.92 16 14 C 0.51 9.01 5.71 -10.99 -0.06 8.94 16 15 O -0.55 -11.55 13.03 5.55 0.07 -11.47 16 16 C -0.11 -1.47 2.60 -91.56 -0.24 -1.70 16 17 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 18 C -0.11 -1.27 4.71 -26.60 -0.13 -1.39 16 19 C 0.11 0.98 6.40 -4.49 -0.03 0.95 16 20 N -0.61 -6.59 3.21 -182.87 -0.59 -7.17 16 21 C 0.07 0.62 10.48 59.85 0.63 1.24 16 22 C 0.52 7.04 7.47 -11.87 -0.09 6.95 16 23 O -0.56 -9.33 15.95 5.55 0.09 -9.24 16 24 C -0.12 -1.57 5.18 -28.10 -0.15 -1.72 16 25 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 26 H 0.04 0.78 5.65 -51.92 -0.29 0.49 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.61 5.95 -51.92 -0.31 2.30 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.59 8.23 -40.82 -0.34 6.26 16 32 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.10 1.10 7.89 -51.93 -0.41 0.69 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 8.10 -51.94 -0.42 0.11 16 36 H 0.09 0.97 6.59 -51.93 -0.34 0.63 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 1.31 7.92 -51.93 -0.41 0.90 16 40 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -31.11 318.90 -6.97 -38.08 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.24 Total: 5.84 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.44 Total: 1.45 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.23 Total: -44.77 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.16 Total: -20.72 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.11 -6.97 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.529 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds