Wall clock time and date at job start Mon Mar 30 2020 01:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52997 * 109.47404 * 2 1
4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1
5 5 C 1.50701 * 109.47212 * 174.99684 * 3 2 1
6 6 H 1.07999 * 119.99742 * 119.99976 * 5 3 2
7 7 C 1.37875 * 120.00221 * 300.00211 * 5 3 2
8 8 N 1.31519 * 119.99615 * 359.97438 * 7 5 3
9 9 Si 1.86792 * 119.99983 * 179.97438 * 7 5 3
10 10 H 1.48498 * 109.47420 * 60.00025 * 9 7 5
11 11 H 1.48503 * 109.47178 * 179.97438 * 9 7 5
12 12 H 1.48496 * 109.47539 * 299.99718 * 9 7 5
13 13 N 1.46500 * 109.47007 * 294.99774 * 3 2 1
14 14 C 1.34777 * 120.00075 * 84.99755 * 13 3 2
15 15 O 1.21287 * 119.99865 * 0.02562 * 14 13 3
16 16 C 1.50699 * 120.00179 * 179.97438 * 14 13 3
17 17 H 1.08997 * 109.67105 * 299.50276 * 16 14 13
18 18 C 1.53343 * 109.67218 * 178.97094 * 16 14 13
19 19 C 1.52910 * 108.68657 * 172.75106 * 18 16 14
20 20 N 1.45756 * 110.49545 * 50.71756 * 19 18 16
21 21 C 1.46501 * 117.94379 * 160.94226 * 20 19 18
22 22 C 1.33350 * 124.10699 * 340.96435 * 20 19 18
23 23 O 1.21288 * 118.24772 * 182.17584 * 22 20 19
24 24 C 1.50178 * 123.50978 * 2.20297 * 22 20 19
25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3
26 26 H 1.09008 * 109.46970 * 60.00049 * 1 2 3
27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3
29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3
30 30 H 0.96997 * 119.99545 * 180.02562 * 8 7 5
31 31 H 0.96997 * 120.00274 * 264.99726 * 13 3 2
32 32 H 1.08999 * 109.60292 * 292.48664 * 18 16 14
33 33 H 1.08999 * 109.60995 * 52.98007 * 18 16 14
34 34 H 1.09001 * 109.28470 * 290.41845 * 19 18 16
35 35 H 1.08988 * 109.14566 * 170.93708 * 19 18 16
36 36 H 1.09000 * 109.46873 * 180.02562 * 21 20 19
37 37 H 1.08995 * 109.47473 * 300.01844 * 21 20 19
38 38 H 1.09001 * 109.46953 * 60.02971 * 21 20 19
39 39 H 1.09004 * 109.39974 * 222.28453 * 24 22 20
40 40 H 1.09002 * 109.33446 * 102.49792 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4442 0.1239
6 1 4.1472 1.8887 -0.6522
7 6 4.1432 0.8783 1.2280
8 7 3.4060 0.3374 2.1734
9 14 6.0049 0.8799 1.3812
10 1 6.5005 2.2797 1.3809
11 1 6.3977 0.2166 2.6505
12 1 6.5966 0.1450 0.2345
13 7 1.6525 2.0974 -1.2518
14 6 0.4352 2.6643 -1.3671
15 8 -0.3393 2.6327 -0.4342
16 6 0.0368 3.3386 -2.6546
17 1 0.7210 4.1604 -2.8654
18 6 -1.3946 3.8754 -2.5347
19 6 -1.7110 4.7086 -3.7772
20 7 -1.3901 3.9623 -4.9874
21 6 -2.0016 4.3983 -6.2453
22 6 -0.5752 2.9074 -5.0214
23 8 -0.3508 2.3896 -6.0951
24 6 0.0793 2.3256 -3.8013
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8901
27 1 -0.3634 -1.0276 -0.0005
28 1 1.8933 -0.5139 -0.8900
29 1 1.8933 -0.5139 0.8901
30 1 3.8291 -0.0604 2.9503
31 1 2.2720 2.1231 -1.9978
32 1 -2.0933 3.0416 -2.4664
33 1 -1.4780 4.4994 -1.6449
34 1 -1.1240 5.6268 -3.7540
35 1 -2.7717 4.9591 -3.7791
36 1 -1.6700 3.7483 -7.0550
37 1 -3.0869 4.3461 -6.1590
38 1 -1.7029 5.4248 -6.4579
39 1 1.1165 2.0799 -4.0292
40 1 -0.4505 1.4204 -3.5046
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183915546.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:30:00
Heat of formation + Delta-G solvation = -105.829449 kcal
Electronic energy + Delta-G solvation = -21290.969544 eV
Core-core repulsion = 18104.250844 eV
Total energy + Delta-G solvation = -3186.718700 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.78517 -40.47617 -37.57829 -36.79259 -35.11780 -34.20454 -32.67498 -30.72874
-29.09428 -28.10903 -25.68931 -25.03903 -23.81342 -21.81406 -21.00792 -19.69425
-18.96750 -17.75062 -17.60170 -17.26641 -17.06041 -16.63297 -16.16713 -15.93168
-15.26338 -14.99192 -14.75849 -14.57569 -14.32216 -13.74132 -13.55628 -13.39109
-13.21044 -13.13413 -12.92789 -12.72984 -12.64697 -12.60862 -12.18306 -12.05421
-11.93880 -11.92616 -11.56418 -11.18904 -11.02532 -10.54364 -10.34608 -9.73123
-9.58602 -8.14391 -6.31258 1.46156 1.47086 1.52826 1.54797 1.84926
2.04409 2.36809 2.63931 3.15132 3.48212 3.64046 3.76523 3.78429
4.23173 4.29786 4.39109 4.50992 4.52037 4.59236 4.63965 4.67766
4.76381 4.77190 4.86098 5.00272 5.04558 5.09961 5.23963 5.29985
5.41869 5.46067 5.58715 5.65678 5.82533 5.95124 6.19967 6.37540
6.77214 7.02559 7.07154 7.36027 7.61537 8.90444
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.029953 B = 0.004497 C = 0.004295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 934.587828 B = 6225.359668 C = 6518.364671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.122 4.122
3 C 0.279 3.721
4 H 0.001 0.999
5 C -0.549 4.549
6 H 0.070 0.930
7 C 0.017 3.983
8 N -0.914 5.914
9 Si 0.967 3.033
10 H -0.271 1.271
11 H -0.287 1.287
12 H -0.267 1.267
13 N -0.705 5.705
14 C 0.505 3.495
15 O -0.580 6.580
16 C -0.099 4.099
17 H 0.122 0.878
18 C -0.112 4.112
19 C 0.117 3.883
20 N -0.605 5.605
21 C 0.066 3.934
22 C 0.520 3.480
23 O -0.597 6.597
24 C -0.119 4.119
25 H 0.027 0.973
26 H 0.046 0.954
27 H 0.042 0.958
28 H 0.038 0.962
29 H 0.070 0.930
30 H 0.264 0.736
31 H 0.402 0.598
32 H 0.066 0.934
33 H 0.095 0.905
34 H 0.090 0.910
35 H 0.106 0.894
36 H 0.068 0.932
37 H 0.080 0.920
38 H 0.082 0.918
39 H 0.111 0.889
40 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.859 9.274 -12.960 18.233
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.161 4.161
3 C 0.175 3.825
4 H 0.019 0.981
5 C -0.587 4.587
6 H 0.088 0.912
7 C -0.183 4.183
8 N -0.552 5.552
9 Si 0.792 3.208
10 H -0.196 1.196
11 H -0.213 1.213
12 H -0.192 1.192
13 N -0.354 5.354
14 C 0.292 3.708
15 O -0.461 6.461
16 C -0.121 4.121
17 H 0.140 0.860
18 C -0.150 4.150
19 C -0.004 4.004
20 N -0.337 5.337
21 C -0.076 4.076
22 C 0.309 3.691
23 O -0.479 6.479
24 C -0.159 4.159
25 H 0.046 0.954
26 H 0.065 0.935
27 H 0.061 0.939
28 H 0.057 0.943
29 H 0.088 0.912
30 H 0.073 0.927
31 H 0.236 0.764
32 H 0.085 0.915
33 H 0.114 0.886
34 H 0.108 0.892
35 H 0.124 0.876
36 H 0.087 0.913
37 H 0.098 0.902
38 H 0.100 0.900
39 H 0.130 0.870
40 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -9.272 8.904 -12.630 18.021
hybrid contribution 1.237 -0.357 0.344 1.332
sum -8.035 8.547 -12.286 16.987
Atomic orbital electron populations
1.21673 0.96862 0.99052 1.00397 1.21789 0.93851 0.99325 1.01148
1.18338 0.93433 0.89122 0.81604 0.98080 1.21571 0.91672 1.38872
1.06582 0.91163 1.25722 1.03024 0.94447 0.95117 1.70038 1.37004
1.38376 1.09821 0.85482 0.79491 0.78429 0.77437 1.19629 1.21304
1.19177 1.46310 1.15748 1.55904 1.17418 1.20900 0.81641 0.78513
0.89769 1.90667 1.52263 1.60909 1.42266 1.21428 1.00686 0.98963
0.90981 0.85989 1.21685 0.93680 1.00928 0.98755 1.21636 1.03416
0.94266 0.81094 1.47372 1.45446 1.29789 1.11053 1.21908 0.98708
1.01190 0.85804 1.20130 0.78681 0.79993 0.90289 1.90684 1.64080
1.61355 1.31770 1.21574 1.03799 0.99216 0.91300 0.95396 0.93486
0.93908 0.94280 0.91196 0.92670 0.76378 0.91488 0.88625 0.89166
0.87579 0.91278 0.90153 0.89966 0.87033 0.88409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.35 8.51 71.98 0.61 -4.73 16
2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16
3 C 0.28 13.78 2.24 44.24 0.10 13.88 16
4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16
5 C -0.55 -28.38 8.73 25.60 0.22 -28.16 16
6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16
7 C 0.02 0.91 5.29 84.65 0.45 1.36 16
8 N -0.91 -51.62 11.29 21.45 0.24 -51.38 16
9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16
10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16
12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16
13 N -0.71 -27.14 4.93 -446.09 -2.20 -29.34 16
14 C 0.51 17.71 5.71 87.66 0.50 18.21 16
15 O -0.58 -24.82 13.03 -3.05 -0.04 -24.86 16
16 C -0.10 -2.35 2.60 -11.40 -0.03 -2.38 16
17 H 0.12 2.40 8.13 -2.39 -0.02 2.38 16
18 C -0.11 -2.23 4.71 30.68 0.14 -2.09 16
19 C 0.12 1.58 6.40 86.49 0.55 2.13 16
20 N -0.60 -11.31 3.21 -851.64 -2.73 -14.05 16
21 C 0.07 0.98 10.48 127.77 1.34 2.32 16
22 C 0.52 13.16 7.47 87.71 0.66 13.81 16
23 O -0.60 -19.58 15.95 -3.05 -0.05 -19.63 16
24 C -0.12 -2.85 5.18 29.71 0.15 -2.69 16
25 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16
26 H 0.05 1.93 5.65 -2.38 -0.01 1.92 16
27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16
29 H 0.07 3.81 5.95 -2.38 -0.01 3.80 16
30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16
31 H 0.40 13.24 8.23 -92.71 -0.76 12.48 16
32 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16
33 H 0.10 1.98 7.89 -2.39 -0.02 1.96 16
34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
35 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16
36 H 0.07 1.38 6.59 -2.39 -0.02 1.36 16
37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.11 2.56 7.92 -2.38 -0.02 2.54 16
40 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16
Total: -1.00 -69.17 318.90 2.39 -66.79
By element:
Atomic # 1 Polarization: 22.61 SS G_CDS: 0.27 Total: 22.88 kcal
Atomic # 6 Polarization: 1.06 SS G_CDS: 4.87 Total: 5.93 kcal
Atomic # 7 Polarization: -90.07 SS G_CDS: -4.69 Total: -94.76 kcal
Atomic # 8 Polarization: -44.40 SS G_CDS: -0.09 Total: -44.48 kcal
Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal
Total: -69.17 2.39 -66.79 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183915546.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.041 kcal
(2) G-P(sol) polarization free energy of solvation -69.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.216 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds