Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 6 6 H 1.07999 * 119.99742 * 119.99976 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00211 * 5 3 2 8 8 N 1.31519 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47420 * 60.00025 * 9 7 5 11 11 H 1.48503 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47539 * 299.99718 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 14 14 C 1.34777 * 120.00075 * 84.99755 * 13 3 2 15 15 O 1.21287 * 119.99865 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00179 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.67105 * 299.50276 * 16 14 13 18 18 C 1.53343 * 109.67218 * 178.97094 * 16 14 13 19 19 C 1.52910 * 108.68657 * 172.75106 * 18 16 14 20 20 N 1.45756 * 110.49545 * 50.71756 * 19 18 16 21 21 C 1.46501 * 117.94379 * 160.94226 * 20 19 18 22 22 C 1.33350 * 124.10699 * 340.96435 * 20 19 18 23 23 O 1.21288 * 118.24772 * 182.17584 * 22 20 19 24 24 C 1.50178 * 123.50978 * 2.20297 * 22 20 19 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 0.96997 * 119.99545 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00274 * 264.99726 * 13 3 2 32 32 H 1.08999 * 109.60292 * 292.48664 * 18 16 14 33 33 H 1.08999 * 109.60995 * 52.98007 * 18 16 14 34 34 H 1.09001 * 109.28470 * 290.41845 * 19 18 16 35 35 H 1.08988 * 109.14566 * 170.93708 * 19 18 16 36 36 H 1.09000 * 109.46873 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47473 * 300.01844 * 21 20 19 38 38 H 1.09001 * 109.46953 * 60.02971 * 21 20 19 39 39 H 1.09004 * 109.39974 * 222.28453 * 24 22 20 40 40 H 1.09002 * 109.33446 * 102.49792 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4060 0.3374 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.5005 2.2797 1.3809 11 1 6.3977 0.2166 2.6505 12 1 6.5966 0.1450 0.2345 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3393 2.6327 -0.4342 16 6 0.0368 3.3386 -2.6546 17 1 0.7210 4.1604 -2.8654 18 6 -1.3946 3.8754 -2.5347 19 6 -1.7110 4.7086 -3.7772 20 7 -1.3901 3.9623 -4.9874 21 6 -2.0016 4.3983 -6.2453 22 6 -0.5752 2.9074 -5.0214 23 8 -0.3508 2.3896 -6.0951 24 6 0.0793 2.3256 -3.8013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.8291 -0.0604 2.9503 31 1 2.2720 2.1231 -1.9978 32 1 -2.0933 3.0416 -2.4664 33 1 -1.4780 4.4994 -1.6449 34 1 -1.1240 5.6268 -3.7540 35 1 -2.7717 4.9591 -3.7791 36 1 -1.6700 3.7483 -7.0550 37 1 -3.0869 4.3461 -6.1590 38 1 -1.7029 5.4248 -6.4579 39 1 1.1165 2.0799 -4.0292 40 1 -0.4505 1.4204 -3.5046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183915546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = -105.829449 kcal Electronic energy + Delta-G solvation = -21290.969544 eV Core-core repulsion = 18104.250844 eV Total energy + Delta-G solvation = -3186.718700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78517 -40.47617 -37.57829 -36.79259 -35.11780 -34.20454 -32.67498 -30.72874 -29.09428 -28.10903 -25.68931 -25.03903 -23.81342 -21.81406 -21.00792 -19.69425 -18.96750 -17.75062 -17.60170 -17.26641 -17.06041 -16.63297 -16.16713 -15.93168 -15.26338 -14.99192 -14.75849 -14.57569 -14.32216 -13.74132 -13.55628 -13.39109 -13.21044 -13.13413 -12.92789 -12.72984 -12.64697 -12.60862 -12.18306 -12.05421 -11.93880 -11.92616 -11.56418 -11.18904 -11.02532 -10.54364 -10.34608 -9.73123 -9.58602 -8.14391 -6.31258 1.46156 1.47086 1.52826 1.54797 1.84926 2.04409 2.36809 2.63931 3.15132 3.48212 3.64046 3.76523 3.78429 4.23173 4.29786 4.39109 4.50992 4.52037 4.59236 4.63965 4.67766 4.76381 4.77190 4.86098 5.00272 5.04558 5.09961 5.23963 5.29985 5.41869 5.46067 5.58715 5.65678 5.82533 5.95124 6.19967 6.37540 6.77214 7.02559 7.07154 7.36027 7.61537 8.90444 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.004497 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.587828 B = 6225.359668 C = 6518.364671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.580 6.580 16 C -0.099 4.099 17 H 0.122 0.878 18 C -0.112 4.112 19 C 0.117 3.883 20 N -0.605 5.605 21 C 0.066 3.934 22 C 0.520 3.480 23 O -0.597 6.597 24 C -0.119 4.119 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 9.274 -12.960 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.121 4.121 17 H 0.140 0.860 18 C -0.150 4.150 19 C -0.004 4.004 20 N -0.337 5.337 21 C -0.076 4.076 22 C 0.309 3.691 23 O -0.479 6.479 24 C -0.159 4.159 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.272 8.904 -12.630 18.021 hybrid contribution 1.237 -0.357 0.344 1.332 sum -8.035 8.547 -12.286 16.987 Atomic orbital electron populations 1.21673 0.96862 0.99052 1.00397 1.21789 0.93851 0.99325 1.01148 1.18338 0.93433 0.89122 0.81604 0.98080 1.21571 0.91672 1.38872 1.06582 0.91163 1.25722 1.03024 0.94447 0.95117 1.70038 1.37004 1.38376 1.09821 0.85482 0.79491 0.78429 0.77437 1.19629 1.21304 1.19177 1.46310 1.15748 1.55904 1.17418 1.20900 0.81641 0.78513 0.89769 1.90667 1.52263 1.60909 1.42266 1.21428 1.00686 0.98963 0.90981 0.85989 1.21685 0.93680 1.00928 0.98755 1.21636 1.03416 0.94266 0.81094 1.47372 1.45446 1.29789 1.11053 1.21908 0.98708 1.01190 0.85804 1.20130 0.78681 0.79993 0.90289 1.90684 1.64080 1.61355 1.31770 1.21574 1.03799 0.99216 0.91300 0.95396 0.93486 0.93908 0.94280 0.91196 0.92670 0.76378 0.91488 0.88625 0.89166 0.87579 0.91278 0.90153 0.89966 0.87033 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.78 2.24 44.24 0.10 13.88 16 4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -28.38 8.73 25.60 0.22 -28.16 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -51.62 11.29 21.45 0.24 -51.38 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 13 N -0.71 -27.14 4.93 -446.09 -2.20 -29.34 16 14 C 0.51 17.71 5.71 87.66 0.50 18.21 16 15 O -0.58 -24.82 13.03 -3.05 -0.04 -24.86 16 16 C -0.10 -2.35 2.60 -11.40 -0.03 -2.38 16 17 H 0.12 2.40 8.13 -2.39 -0.02 2.38 16 18 C -0.11 -2.23 4.71 30.68 0.14 -2.09 16 19 C 0.12 1.58 6.40 86.49 0.55 2.13 16 20 N -0.60 -11.31 3.21 -851.64 -2.73 -14.05 16 21 C 0.07 0.98 10.48 127.77 1.34 2.32 16 22 C 0.52 13.16 7.47 87.71 0.66 13.81 16 23 O -0.60 -19.58 15.95 -3.05 -0.05 -19.63 16 24 C -0.12 -2.85 5.18 29.71 0.15 -2.69 16 25 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 26 H 0.05 1.93 5.65 -2.38 -0.01 1.92 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 3.81 5.95 -2.38 -0.01 3.80 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.40 13.24 8.23 -92.71 -0.76 12.48 16 32 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.10 1.98 7.89 -2.39 -0.02 1.96 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.07 1.38 6.59 -2.39 -0.02 1.36 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 2.56 7.92 -2.38 -0.02 2.54 16 40 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -69.17 318.90 2.39 -66.79 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.27 Total: 22.88 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.87 Total: 5.93 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.69 Total: -94.76 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.09 Total: -44.48 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.17 2.39 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.041 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds