Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47065 * 2 1 4 4 H 1.09006 * 109.46927 * 54.99971 * 3 2 1 5 5 C 1.50699 * 109.47214 * 174.99584 * 3 2 1 6 6 H 1.08007 * 119.99138 * 119.99836 * 5 3 2 7 7 C 1.37872 * 120.00567 * 300.00588 * 5 3 2 8 8 N 1.31516 * 119.99389 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00384 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47317 * 89.99387 * 9 7 5 11 11 H 1.48502 * 109.47109 * 209.99956 * 9 7 5 12 12 H 1.48500 * 109.46833 * 329.99448 * 9 7 5 13 13 N 1.46498 * 109.47179 * 295.00099 * 3 2 1 14 14 C 1.34779 * 120.00077 * 84.99951 * 13 3 2 15 15 O 1.21277 * 119.99808 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00112 * 179.97438 * 14 13 3 17 17 H 1.09008 * 109.70072 * 60.51457 * 16 14 13 18 18 C 1.53266 * 109.70846 * 181.22835 * 16 14 13 19 19 C 1.52925 * 108.71493 * 187.46195 * 18 16 14 20 20 N 1.45752 * 110.32049 * 308.95081 * 19 18 16 21 21 C 1.46502 * 117.94676 * 199.19893 * 20 19 18 22 22 C 1.33349 * 124.10697 * 19.17601 * 20 19 18 23 23 O 1.21286 * 118.24677 * 177.75608 * 22 20 19 24 24 C 1.50172 * 123.51198 * 357.77833 * 22 20 19 25 25 H 1.09002 * 109.47060 * 299.99655 * 1 2 3 26 26 H 1.08998 * 109.47282 * 59.99855 * 1 2 3 27 27 H 1.09006 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47015 * 239.99852 * 2 1 3 29 29 H 1.09006 * 109.46997 * 120.00198 * 2 1 3 30 30 H 0.97011 * 119.99537 * 180.02562 * 8 7 5 31 31 H 0.97002 * 120.00096 * 265.00120 * 13 3 2 32 32 H 1.09004 * 109.74245 * 67.60051 * 18 16 14 33 33 H 1.09000 * 109.42558 * 307.13874 * 18 16 14 34 34 H 1.09002 * 109.30289 * 188.73998 * 19 18 16 35 35 H 1.08998 * 109.30095 * 69.15706 * 19 18 16 36 36 H 1.09004 * 109.47225 * 89.99883 * 21 20 19 37 37 H 1.09000 * 109.47126 * 210.00466 * 21 20 19 38 38 H 1.09005 * 109.46807 * 329.99906 * 21 20 19 39 39 H 1.09001 * 109.40570 * 137.70798 * 24 22 20 40 40 H 1.09003 * 109.40115 * 257.45153 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3374 2.1732 9 14 6.0050 0.8801 1.3812 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8395 0.0270 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4341 16 6 0.0366 3.3386 -2.6544 17 1 0.0579 2.6155 -3.4698 18 6 -1.3729 3.9246 -2.5162 19 6 -1.8277 4.4364 -3.8836 20 7 -0.8130 5.3092 -4.4606 21 6 -1.2207 6.2214 -5.5320 22 6 0.4631 5.3299 -4.0740 23 8 1.2272 6.0704 -4.6560 24 6 1.0048 4.4850 -2.9569 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0605 2.9503 31 1 2.2719 2.1231 -1.9978 32 1 -1.3607 4.7488 -1.8029 33 1 -2.0558 3.1486 -2.1704 34 1 -2.7583 4.9923 -3.7690 35 1 -1.9940 3.5887 -4.5484 36 1 -1.5446 7.1681 -5.0996 37 1 -0.3776 6.3967 -6.2003 38 1 -2.0431 5.7780 -6.0933 39 1 1.9715 4.0748 -3.2491 40 1 1.1282 5.0996 -2.0652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183915586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -106.497457 kcal Electronic energy + Delta-G solvation = -21238.799895 eV Core-core repulsion = 18052.052228 eV Total energy + Delta-G solvation = -3186.747667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77833 -40.47296 -37.58372 -36.79605 -35.12971 -34.21041 -32.65789 -30.69796 -29.11875 -28.10409 -25.71013 -25.02181 -23.81236 -21.81199 -21.00706 -19.70148 -18.98206 -17.78000 -17.60861 -17.13979 -17.02924 -16.65183 -16.24074 -15.90778 -15.25005 -15.14070 -14.59780 -14.56305 -14.28791 -13.79240 -13.57467 -13.39040 -13.26146 -13.13824 -12.88823 -12.73244 -12.67718 -12.56812 -12.15354 -12.07609 -11.96985 -11.92094 -11.54150 -11.18400 -11.02509 -10.55190 -10.35753 -9.73222 -9.58292 -8.15135 -6.31697 1.44676 1.45694 1.53150 1.55485 1.84628 2.04291 2.36567 2.63650 3.14628 3.49147 3.64439 3.77370 3.78619 4.22634 4.28992 4.38697 4.49437 4.53450 4.61827 4.63972 4.65460 4.77827 4.78476 4.86353 4.97819 5.04697 5.10763 5.24968 5.31011 5.42251 5.47622 5.59424 5.65886 5.83322 5.95300 6.20477 6.37973 6.77138 7.02484 7.07188 7.35710 7.61479 8.89841 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.004798 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.130697 B = 5834.892107 C = 6701.584270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.262 1.262 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.580 6.580 16 C -0.098 4.098 17 H 0.126 0.874 18 C -0.113 4.113 19 C 0.117 3.883 20 N -0.605 5.605 21 C 0.073 3.927 22 C 0.519 3.481 23 O -0.597 6.597 24 C -0.120 4.120 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 5.670 -14.448 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.119 4.119 17 H 0.144 0.856 18 C -0.151 4.151 19 C -0.004 4.004 20 N -0.336 5.336 21 C -0.069 4.069 22 C 0.308 3.692 23 O -0.479 6.479 24 C -0.160 4.160 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.686 5.898 -13.890 18.491 hybrid contribution 1.382 -0.082 0.485 1.467 sum -9.304 5.816 -13.405 17.323 Atomic orbital electron populations 1.21675 0.96687 0.99165 1.00462 1.21782 0.94025 0.99095 1.01194 1.18347 0.93385 0.89276 0.81571 0.98269 1.21604 0.91736 1.38713 1.06571 0.91254 1.25702 1.02937 0.94469 0.95140 1.70045 1.36891 1.38463 1.09817 0.85449 0.79629 0.77361 0.78526 1.20602 1.20974 1.18623 1.46311 1.15723 1.55904 1.17439 1.20902 0.81702 0.78385 0.89847 1.90665 1.52287 1.61096 1.42060 1.21421 0.97059 0.97535 0.95925 0.85642 1.21679 0.94627 1.01685 0.97129 1.21693 0.90800 0.94424 0.93522 1.47408 1.08565 1.40071 1.37593 1.21848 1.01546 0.93463 0.90036 1.20111 0.82214 0.82664 0.84204 1.90692 1.57131 1.43437 1.56670 1.21579 1.00417 0.96412 0.97638 0.95571 0.93214 0.93714 0.94107 0.91265 0.92674 0.76381 0.91754 0.88440 0.87525 0.88855 0.92163 0.92007 0.87832 0.87130 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.75 2.24 44.24 0.10 13.85 16 4 H 0.00 -0.03 7.58 -2.38 -0.02 -0.05 16 5 C -0.55 -28.51 8.73 25.60 0.22 -28.29 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 N -0.71 -27.15 4.93 -446.10 -2.20 -29.35 16 14 C 0.50 17.70 5.70 87.66 0.50 18.20 16 15 O -0.58 -24.81 13.03 -3.02 -0.04 -24.85 16 16 C -0.10 -2.32 2.61 -11.43 -0.03 -2.35 16 17 H 0.13 2.36 8.13 -2.38 -0.02 2.34 16 18 C -0.11 -2.24 4.70 30.66 0.14 -2.09 16 19 C 0.12 1.53 6.33 86.50 0.55 2.08 16 20 N -0.60 -11.37 3.21 -851.60 -2.73 -14.11 16 21 C 0.07 1.09 10.24 127.77 1.31 2.40 16 22 C 0.52 13.44 7.47 87.71 0.65 14.10 16 23 O -0.60 -20.10 16.18 -3.05 -0.05 -20.15 16 24 C -0.12 -2.99 5.18 29.71 0.15 -2.84 16 25 H 0.03 1.20 7.85 -2.39 -0.02 1.19 16 26 H 0.05 1.97 5.65 -2.39 -0.01 1.96 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 3.74 5.95 -2.38 -0.01 3.73 16 30 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.40 13.27 8.23 -92.71 -0.76 12.50 16 32 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 33 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 34 H 0.11 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.18 7.13 -2.39 -0.02 1.17 16 38 H 0.10 0.83 8.01 -2.38 -0.02 0.81 16 39 H 0.11 2.65 7.92 -2.39 -0.02 2.63 16 40 H 0.09 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -70.06 319.21 2.35 -67.71 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.27 Total: 21.99 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.83 Total: 6.20 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -4.69 Total: -94.92 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.09 Total: -45.00 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -70.06 2.35 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.785 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds