Wall clock time and date at job start Mon Mar 30 2020 01:29:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53003 * 109.47089 * 2 1
4 4 H 1.08999 * 109.47286 * 305.00691 * 3 2 1
5 5 C 1.50698 * 109.47220 * 184.99916 * 3 2 1
6 6 H 1.07997 * 119.99882 * 240.00311 * 5 3 2
7 7 C 1.37880 * 119.99782 * 60.00177 * 5 3 2
8 8 N 1.31514 * 119.99907 * 359.97438 * 7 5 3
9 9 Si 1.86795 * 119.99841 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.47409 * 0.02562 * 9 7 5
11 11 H 1.48497 * 109.46949 * 119.99952 * 9 7 5
12 12 H 1.48499 * 109.47275 * 240.00166 * 9 7 5
13 13 N 1.46502 * 109.46849 * 64.99973 * 3 2 1
14 14 C 1.34780 * 120.00212 * 275.00096 * 13 3 2
15 15 O 1.21276 * 119.99730 * 0.02562 * 14 13 3
16 16 C 1.50701 * 119.99857 * 179.97438 * 14 13 3
17 17 H 1.09002 * 110.64404 * 300.69983 * 16 14 13
18 18 C 1.55162 * 110.71644 * 177.55815 * 16 14 13
19 19 C 1.54912 * 101.57717 * 205.95975 * 18 16 14
20 20 N 1.47422 * 104.83500 * 37.00946 * 19 18 16
21 21 C 1.34774 * 125.64545 * 155.90418 * 20 19 18
22 22 C 1.50698 * 120.00235 * 359.97438 * 21 20 19
23 23 O 1.21282 * 119.99780 * 179.97438 * 21 20 19
24 24 C 1.47018 * 108.70074 * 335.87099 * 20 19 18
25 25 H 1.08997 * 109.46982 * 59.99817 * 1 2 3
26 26 H 1.09001 * 109.46776 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.46992 * 299.99842 * 1 2 3
28 28 H 1.08996 * 109.46992 * 240.00158 * 2 1 3
29 29 H 1.08997 * 109.46982 * 120.00183 * 2 1 3
30 30 H 0.97003 * 119.99663 * 179.97438 * 8 7 5
31 31 H 0.97004 * 119.99898 * 94.99944 * 13 3 2
32 32 H 1.08999 * 111.00577 * 324.03006 * 18 16 14
33 33 H 1.08996 * 111.00139 * 87.88775 * 18 16 14
34 34 H 1.09003 * 110.36123 * 155.85332 * 19 18 16
35 35 H 1.09001 * 110.36394 * 278.16548 * 19 18 16
36 36 H 1.09001 * 109.47557 * 89.99861 * 22 21 20
37 37 H 1.08998 * 109.47371 * 209.99708 * 22 21 20
38 38 H 1.09000 * 109.47230 * 329.99878 * 22 21 20
39 39 H 1.09001 * 109.88087 * 241.63802 * 24 20 19
40 40 H 1.09003 * 109.87911 * 120.47955 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8417
5 6 3.5419 1.4444 -0.1238
6 1 4.1472 1.8889 0.6523
7 6 4.1433 0.8785 -1.2280
8 7 3.4062 0.3367 -2.1729
9 14 6.0049 0.8814 -1.3818
10 1 6.5988 1.5464 -0.1942
11 1 6.4970 -0.5173 -1.4630
12 1 6.3990 1.6169 -2.6102
13 7 1.6524 2.0975 1.2518
14 6 0.4351 2.6643 1.3670
15 8 -0.3396 2.6318 0.4345
16 6 0.0362 3.3375 2.6550
17 1 0.0727 2.6317 3.4848
18 6 -1.3768 3.9665 2.5309
19 6 -1.3046 5.1027 3.5814
20 7 0.0737 5.6172 3.4868
21 6 0.4774 6.8522 3.8451
22 6 -0.5181 7.8400 4.3966
23 8 1.6419 7.1685 3.7236
24 6 0.9349 4.5597 2.9378
25 1 -0.3633 0.5138 -0.8899
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8899
30 1 3.8293 -0.0611 -2.9498
31 1 2.2719 2.1231 1.9978
32 1 -1.5390 4.3686 1.5309
33 1 -2.1503 3.2435 2.7899
34 1 -2.0204 5.8886 3.3398
35 1 -1.4950 4.7090 4.5798
36 1 -0.5671 7.7397 5.4809
37 1 -0.2065 8.8522 4.1391
38 1 -1.5010 7.6426 3.9688
39 1 1.7042 4.2943 3.6631
40 1 1.3976 4.9019 2.0121
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183943540.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:29:51
Heat of formation + Delta-G solvation = -81.849686 kcal
Electronic energy + Delta-G solvation = -21055.819588 eV
Core-core repulsion = 17870.140729 eV
Total energy + Delta-G solvation = -3185.678859 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.31700 -38.99865 -37.05221 -35.04570 -32.56002 -32.08863 -30.88164 -29.95510
-28.79603 -26.86941 -24.01816 -23.14622 -22.03016 -19.93522 -19.44641 -19.26451
-17.54423 -17.01814 -16.38251 -15.60750 -15.46443 -15.22036 -14.72255 -14.31056
-14.07226 -13.48672 -13.20016 -12.94178 -12.82873 -12.69888 -12.52827 -12.18799
-12.00870 -11.74848 -11.51355 -11.24394 -11.20658 -10.96158 -10.89632 -10.82410
-10.31500 -10.18387 -9.98298 -9.65116 -9.07941 -9.03221 -8.74516 -8.50730
-7.85501 -6.12884 -4.22054 2.54000 2.83694 3.24286 3.30608 3.32765
3.35850 4.00572 4.30241 4.36573 4.45285 4.75222 4.95169 5.02879
5.11760 5.18067 5.18896 5.21978 5.30344 5.56117 5.62306 5.74423
5.83240 5.93660 6.11570 6.20224 6.36646 6.42766 6.63256 7.01107
7.17042 7.34100 7.39142 7.42577 7.60854 7.71731 7.88924 8.05850
8.16961 8.63623 8.76758 9.08964 9.45460 10.92459
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.022151 B = 0.004868 C = 0.004123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1263.731110 B = 5750.879454 C = 6788.989669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.128 4.128
3 C 0.269 3.731
4 H 0.049 0.951
5 C -0.534 4.534
6 H 0.062 0.938
7 C 0.067 3.933
8 N -0.882 5.882
9 Si 0.900 3.100
10 H -0.272 1.272
11 H -0.283 1.283
12 H -0.283 1.283
13 N -0.705 5.705
14 C 0.511 3.489
15 O -0.544 6.544
16 C -0.126 4.126
17 H 0.104 0.896
18 C -0.112 4.112
19 C 0.097 3.903
20 N -0.619 5.619
21 C 0.523 3.477
22 C -0.169 4.169
23 O -0.546 6.546
24 C 0.118 3.882
25 H 0.049 0.951
26 H 0.022 0.978
27 H 0.038 0.962
28 H 0.099 0.901
29 H 0.031 0.969
30 H 0.264 0.736
31 H 0.389 0.611
32 H 0.092 0.908
33 H 0.088 0.912
34 H 0.080 0.920
35 H 0.071 0.929
36 H 0.092 0.908
37 H 0.092 0.908
38 H 0.080 0.920
39 H 0.075 0.925
40 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.220 7.435 13.165 18.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.167 4.167
3 C 0.168 3.832
4 H 0.067 0.933
5 C -0.572 4.572
6 H 0.080 0.920
7 C -0.136 4.136
8 N -0.520 5.520
9 Si 0.728 3.272
10 H -0.197 1.197
11 H -0.209 1.209
12 H -0.209 1.209
13 N -0.352 5.352
14 C 0.295 3.705
15 O -0.423 6.423
16 C -0.148 4.148
17 H 0.122 0.878
18 C -0.150 4.150
19 C -0.026 4.026
20 N -0.354 5.354
21 C 0.312 3.688
22 C -0.228 4.228
23 O -0.423 6.423
24 C -0.005 4.005
25 H 0.068 0.932
26 H 0.041 0.959
27 H 0.057 0.943
28 H 0.117 0.883
29 H 0.050 0.950
30 H 0.074 0.926
31 H 0.221 0.779
32 H 0.111 0.889
33 H 0.107 0.893
34 H 0.098 0.902
35 H 0.090 0.910
36 H 0.111 0.889
37 H 0.111 0.889
38 H 0.099 0.901
39 H 0.093 0.907
40 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -10.078 7.559 12.245 17.568
hybrid contribution 1.269 -0.187 0.280 1.313
sum -8.809 7.372 12.525 16.995
Atomic orbital electron populations
1.21835 0.98373 0.98015 1.01165 1.21936 0.92584 0.99809 1.02323
1.18806 0.94279 0.89179 0.80967 0.93305 1.21277 0.90720 1.38904
1.06326 0.92003 1.24878 0.98611 0.94772 0.95370 1.69902 1.35042
1.37702 1.09346 0.86411 0.84890 0.77744 0.78188 1.19701 1.20885
1.20874 1.46536 1.14452 1.55611 1.18624 1.19911 0.82943 0.79381
0.88298 1.90673 1.51459 1.60016 1.40115 1.22471 0.96824 0.96998
0.98539 0.87750 1.22672 0.95484 0.96600 1.00251 1.22466 0.83333
0.97068 0.99699 1.48591 1.10356 1.12685 1.63758 1.20503 0.89479
0.81168 0.77639 1.21887 0.98912 0.99188 1.02821 1.90749 1.19421
1.77371 1.54808 1.21836 0.92865 0.86013 0.99803 0.93170 0.95870
0.94336 0.88268 0.95030 0.92631 0.77912 0.88942 0.89341 0.90180
0.91042 0.88915 0.88913 0.90112 0.90694 0.90489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16
2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16
3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16
4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16
5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16
6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16
7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16
8 N -0.88 -24.61 11.29 55.43 0.63 -23.99 16
9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16
10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
13 N -0.71 -14.02 5.00 -54.93 -0.27 -14.29 16
14 C 0.51 9.38 5.59 -10.98 -0.06 9.32 16
15 O -0.54 -11.85 12.87 5.56 0.07 -11.78 16
16 C -0.13 -1.65 3.33 -89.94 -0.30 -1.95 16
17 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16
18 C -0.11 -1.24 6.15 -24.58 -0.15 -1.39 16
19 C 0.10 0.84 6.67 -2.53 -0.02 0.82 16
20 N -0.62 -7.47 3.33 -170.52 -0.57 -8.04 16
21 C 0.52 6.79 7.96 -10.99 -0.09 6.70 16
22 C -0.17 -1.31 9.90 36.00 0.36 -0.95 16
23 O -0.55 -9.69 17.43 5.56 0.10 -9.59 16
24 C 0.12 1.61 6.44 -3.07 -0.02 1.59 16
25 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16
26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16
28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16
29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
31 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16
32 H 0.09 1.23 7.45 -51.93 -0.39 0.85 16
33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.08 0.53 6.75 -51.93 -0.35 0.18 16
35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.08 0.46 6.52 -51.93 -0.34 0.12 16
39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
40 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16
LS Contribution 322.32 15.07 4.86 4.86
Total: -1.00 -32.56 322.32 -7.03 -39.59
By element:
Atomic # 1 Polarization: 11.51 SS G_CDS: -6.16 Total: 5.35 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -0.66 Total: 2.18 kcal
Atomic # 7 Polarization: -46.10 SS G_CDS: -0.22 Total: -46.32 kcal
Atomic # 8 Polarization: -21.54 SS G_CDS: 0.17 Total: -21.37 kcal
Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -32.56 -7.03 -39.59 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183943540.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.258 kcal
(2) G-P(sol) polarization free energy of solvation -32.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds