Wall clock time and date at job start Mon Mar 30 2020 01:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 H 1.08999 * 109.47286 * 305.00691 * 3 2 1 5 5 C 1.50698 * 109.47220 * 184.99916 * 3 2 1 6 6 H 1.07997 * 119.99882 * 240.00311 * 5 3 2 7 7 C 1.37880 * 119.99782 * 60.00177 * 5 3 2 8 8 N 1.31514 * 119.99907 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99841 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47409 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46949 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47275 * 240.00166 * 9 7 5 13 13 N 1.46502 * 109.46849 * 64.99973 * 3 2 1 14 14 C 1.34780 * 120.00212 * 275.00096 * 13 3 2 15 15 O 1.21276 * 119.99730 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99857 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.64404 * 300.69983 * 16 14 13 18 18 C 1.55162 * 110.71644 * 177.55815 * 16 14 13 19 19 C 1.54912 * 101.57717 * 205.95975 * 18 16 14 20 20 N 1.47422 * 104.83500 * 37.00946 * 19 18 16 21 21 C 1.34774 * 125.64545 * 155.90418 * 20 19 18 22 22 C 1.50698 * 120.00235 * 359.97438 * 21 20 19 23 23 O 1.21282 * 119.99780 * 179.97438 * 21 20 19 24 24 C 1.47018 * 108.70074 * 335.87099 * 20 19 18 25 25 H 1.08997 * 109.46982 * 59.99817 * 1 2 3 26 26 H 1.09001 * 109.46776 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46992 * 299.99842 * 1 2 3 28 28 H 1.08996 * 109.46992 * 240.00158 * 2 1 3 29 29 H 1.08997 * 109.46982 * 120.00183 * 2 1 3 30 30 H 0.97003 * 119.99663 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99898 * 94.99944 * 13 3 2 32 32 H 1.08999 * 111.00577 * 324.03006 * 18 16 14 33 33 H 1.08996 * 111.00139 * 87.88775 * 18 16 14 34 34 H 1.09003 * 110.36123 * 155.85332 * 19 18 16 35 35 H 1.09001 * 110.36394 * 278.16548 * 19 18 16 36 36 H 1.09001 * 109.47557 * 89.99861 * 22 21 20 37 37 H 1.08998 * 109.47371 * 209.99708 * 22 21 20 38 38 H 1.09000 * 109.47230 * 329.99878 * 22 21 20 39 39 H 1.09001 * 109.88087 * 241.63802 * 24 20 19 40 40 H 1.09003 * 109.87911 * 120.47955 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5988 1.5464 -0.1942 11 1 6.4970 -0.5173 -1.4630 12 1 6.3990 1.6169 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6318 0.4345 16 6 0.0362 3.3375 2.6550 17 1 0.0727 2.6317 3.4848 18 6 -1.3768 3.9665 2.5309 19 6 -1.3046 5.1027 3.5814 20 7 0.0737 5.6172 3.4868 21 6 0.4774 6.8522 3.8451 22 6 -0.5181 7.8400 4.3966 23 8 1.6419 7.1685 3.7236 24 6 0.9349 4.5597 2.9378 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0611 -2.9498 31 1 2.2719 2.1231 1.9978 32 1 -1.5390 4.3686 1.5309 33 1 -2.1503 3.2435 2.7899 34 1 -2.0204 5.8886 3.3398 35 1 -1.4950 4.7090 4.5798 36 1 -0.5671 7.7397 5.4809 37 1 -0.2065 8.8522 4.1391 38 1 -1.5010 7.6426 3.9688 39 1 1.7042 4.2943 3.6631 40 1 1.3976 4.9019 2.0121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183943540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:51 Heat of formation + Delta-G solvation = -81.849686 kcal Electronic energy + Delta-G solvation = -21055.819588 eV Core-core repulsion = 17870.140729 eV Total energy + Delta-G solvation = -3185.678859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31700 -38.99865 -37.05221 -35.04570 -32.56002 -32.08863 -30.88164 -29.95510 -28.79603 -26.86941 -24.01816 -23.14622 -22.03016 -19.93522 -19.44641 -19.26451 -17.54423 -17.01814 -16.38251 -15.60750 -15.46443 -15.22036 -14.72255 -14.31056 -14.07226 -13.48672 -13.20016 -12.94178 -12.82873 -12.69888 -12.52827 -12.18799 -12.00870 -11.74848 -11.51355 -11.24394 -11.20658 -10.96158 -10.89632 -10.82410 -10.31500 -10.18387 -9.98298 -9.65116 -9.07941 -9.03221 -8.74516 -8.50730 -7.85501 -6.12884 -4.22054 2.54000 2.83694 3.24286 3.30608 3.32765 3.35850 4.00572 4.30241 4.36573 4.45285 4.75222 4.95169 5.02879 5.11760 5.18067 5.18896 5.21978 5.30344 5.56117 5.62306 5.74423 5.83240 5.93660 6.11570 6.20224 6.36646 6.42766 6.63256 7.01107 7.17042 7.34100 7.39142 7.42577 7.60854 7.71731 7.88924 8.05850 8.16961 8.63623 8.76758 9.08964 9.45460 10.92459 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.004868 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.731110 B = 5750.879454 C = 6788.989669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.511 3.489 15 O -0.544 6.544 16 C -0.126 4.126 17 H 0.104 0.896 18 C -0.112 4.112 19 C 0.097 3.903 20 N -0.619 5.619 21 C 0.523 3.477 22 C -0.169 4.169 23 O -0.546 6.546 24 C 0.118 3.882 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 7.435 13.165 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.295 3.705 15 O -0.423 6.423 16 C -0.148 4.148 17 H 0.122 0.878 18 C -0.150 4.150 19 C -0.026 4.026 20 N -0.354 5.354 21 C 0.312 3.688 22 C -0.228 4.228 23 O -0.423 6.423 24 C -0.005 4.005 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.078 7.559 12.245 17.568 hybrid contribution 1.269 -0.187 0.280 1.313 sum -8.809 7.372 12.525 16.995 Atomic orbital electron populations 1.21835 0.98373 0.98015 1.01165 1.21936 0.92584 0.99809 1.02323 1.18806 0.94279 0.89179 0.80967 0.93305 1.21277 0.90720 1.38904 1.06326 0.92003 1.24878 0.98611 0.94772 0.95370 1.69902 1.35042 1.37702 1.09346 0.86411 0.84890 0.77744 0.78188 1.19701 1.20885 1.20874 1.46536 1.14452 1.55611 1.18624 1.19911 0.82943 0.79381 0.88298 1.90673 1.51459 1.60016 1.40115 1.22471 0.96824 0.96998 0.98539 0.87750 1.22672 0.95484 0.96600 1.00251 1.22466 0.83333 0.97068 0.99699 1.48591 1.10356 1.12685 1.63758 1.20503 0.89479 0.81168 0.77639 1.21887 0.98912 0.99188 1.02821 1.90749 1.19421 1.77371 1.54808 1.21836 0.92865 0.86013 0.99803 0.93170 0.95870 0.94336 0.88268 0.95030 0.92631 0.77912 0.88942 0.89341 0.90180 0.91042 0.88915 0.88913 0.90112 0.90694 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.99 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.71 -14.02 5.00 -54.93 -0.27 -14.29 16 14 C 0.51 9.38 5.59 -10.98 -0.06 9.32 16 15 O -0.54 -11.85 12.87 5.56 0.07 -11.78 16 16 C -0.13 -1.65 3.33 -89.94 -0.30 -1.95 16 17 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.11 -1.24 6.15 -24.58 -0.15 -1.39 16 19 C 0.10 0.84 6.67 -2.53 -0.02 0.82 16 20 N -0.62 -7.47 3.33 -170.52 -0.57 -8.04 16 21 C 0.52 6.79 7.96 -10.99 -0.09 6.70 16 22 C -0.17 -1.31 9.90 36.00 0.36 -0.95 16 23 O -0.55 -9.69 17.43 5.56 0.10 -9.59 16 24 C 0.12 1.61 6.44 -3.07 -0.02 1.59 16 25 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 32 H 0.09 1.23 7.45 -51.93 -0.39 0.85 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.53 6.75 -51.93 -0.35 0.18 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.46 6.52 -51.93 -0.34 0.12 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -32.56 322.32 -7.03 -39.59 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.16 Total: 5.35 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.66 Total: 2.18 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.22 Total: -46.32 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.17 Total: -21.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.56 -7.03 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183943540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.258 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds