Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 N 1.46496 * 109.47281 * 185.55211 * 3 2 1 5 5 C 1.37103 * 119.99963 * 67.22022 * 4 3 2 6 6 H 1.08001 * 119.99907 * 205.38466 * 5 4 3 7 7 C 1.38940 * 119.99837 * 25.37965 * 5 4 3 8 8 N 1.31411 * 120.00503 * 358.85588 * 7 5 4 9 9 Si 1.86799 * 120.00081 * 178.85632 * 7 5 4 10 10 H 1.48498 * 109.47647 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47043 * 300.00010 * 9 7 5 12 12 H 1.48501 * 109.47206 * 59.99848 * 9 7 5 13 13 C 1.34777 * 120.00438 * 247.21897 * 4 3 2 14 14 O 1.21289 * 120.00553 * 177.38927 * 13 4 3 15 15 C 1.50708 * 119.99768 * 357.39440 * 13 4 3 16 16 H 1.09003 * 109.59822 * 279.37194 * 15 13 4 17 17 C 1.52986 * 109.60499 * 159.04659 * 15 13 4 18 18 C 1.51780 * 110.87746 * 326.70426 * 17 15 13 19 19 C 1.51789 * 113.81035 * 293.00389 * 18 17 15 20 20 C 1.53062 * 110.74711 * 66.81675 * 19 18 17 21 21 C 1.51428 * 108.49193 * 275.07469 * 20 19 18 22 22 O 1.21272 * 119.89167 * 251.19715 * 21 20 19 23 23 N 1.33627 * 120.27377 * 71.35636 * 21 20 19 24 24 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46947 * 300.00102 * 1 2 3 26 26 H 1.08995 * 109.47024 * 59.99825 * 1 2 3 27 27 H 1.08997 * 109.46947 * 239.99898 * 2 1 3 28 28 H 1.08995 * 109.47024 * 120.00175 * 2 1 3 29 29 H 1.09004 * 109.46913 * 65.55205 * 3 2 1 30 30 H 1.09002 * 109.47199 * 305.55708 * 3 2 1 31 31 H 0.96998 * 120.00937 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.19774 * 87.06403 * 17 15 13 33 33 H 1.09000 * 109.19504 * 206.34622 * 17 15 13 34 34 H 1.08997 * 108.61569 * 54.12345 * 18 17 15 35 35 H 1.08998 * 108.61144 * 172.02640 * 18 17 15 36 36 H 1.09004 * 109.22237 * 187.14336 * 19 18 17 37 37 H 1.09001 * 109.22685 * 306.53364 * 19 18 17 38 38 H 1.08998 * 109.63296 * 34.78012 * 20 19 18 39 39 H 1.09003 * 109.63348 * 155.37850 * 20 19 18 40 40 H 0.97007 * 119.96026 * 180.31037 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4989 1.4446 -0.1336 5 6 4.0810 1.0214 -1.3006 6 1 5.0885 0.6322 -1.2914 7 6 3.3749 1.0931 -2.4950 8 7 2.1411 1.5456 -2.5028 9 14 4.1792 0.5464 -4.0899 10 1 3.2229 0.7221 -5.2123 11 1 5.3912 1.3674 -4.3398 12 1 4.5633 -0.8842 -3.9856 13 6 4.2689 1.8626 0.8905 14 8 5.4775 1.8198 0.7975 15 6 3.6282 2.3830 2.1515 16 1 3.3248 3.4198 2.0064 17 6 4.6264 2.2971 3.3076 18 6 5.5353 1.0920 3.1492 19 6 4.8183 -0.2387 3.2875 20 6 3.8402 -0.4506 2.1293 21 6 2.5328 0.2312 2.4741 22 8 1.5560 -0.4355 2.7428 23 7 2.4496 1.5649 2.4804 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7602 1.9268 0.9356 30 1 1.5978 1.9843 -0.8361 31 1 1.6482 1.5960 -3.3367 32 1 5.2323 3.2030 3.3260 33 1 4.0802 2.2130 4.2471 34 1 6.0020 1.1351 2.1651 35 1 6.3173 1.1440 3.9067 36 1 5.5531 -1.0439 3.2885 37 1 4.2681 -0.2539 4.2283 38 1 4.2513 -0.0152 1.2185 39 1 3.6698 -1.5174 1.9843 40 1 1.6110 1.9969 2.7063 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193885505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = -27.776265 kcal Electronic energy + Delta-G solvation = -23419.782979 eV Core-core repulsion = 20236.448919 eV Total energy + Delta-G solvation = -3183.334060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71302 -39.75509 -37.88766 -36.65263 -35.01893 -33.86700 -33.08967 -31.88654 -28.38712 -27.56921 -26.19356 -25.01313 -22.80694 -21.98590 -21.05143 -20.14332 -18.94287 -18.64033 -18.14954 -17.34441 -16.58950 -16.14144 -16.06828 -15.72352 -15.19256 -14.89495 -14.66746 -14.45710 -14.28554 -13.75803 -13.63841 -13.50489 -13.15981 -13.08033 -12.81411 -12.49728 -12.33360 -12.12038 -12.05225 -11.86253 -11.83700 -11.60583 -11.45863 -11.23479 -10.91683 -10.71494 -10.09101 -9.70829 -9.30585 -7.94291 -5.92543 1.37998 1.42474 1.50342 1.65976 1.85956 2.27944 2.40382 3.03408 3.17804 3.56308 3.80888 3.90368 4.00411 4.21640 4.26595 4.40580 4.41116 4.51759 4.68529 4.74425 4.78752 4.90513 4.95039 5.11446 5.14022 5.18950 5.25470 5.27026 5.32524 5.35896 5.48584 5.65970 5.80487 5.86879 5.97999 6.13978 6.26924 6.66882 7.24907 7.25583 7.57302 8.07202 8.73183 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020582 B = 0.009533 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.079637 B = 2936.546267 C = 3647.531325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.134 4.134 3 C 0.065 3.935 4 N -0.442 5.442 5 C -0.329 4.329 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.879 5.879 9 Si 0.978 3.022 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.432 3.568 14 O -0.596 6.596 15 C 0.130 3.870 16 H 0.137 0.863 17 C -0.102 4.102 18 C -0.180 4.180 19 C -0.096 4.096 20 C -0.171 4.171 21 C 0.544 3.456 22 O -0.581 6.581 23 N -0.699 5.699 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.267 0.733 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 2.251 8.878 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C -0.058 4.058 4 N -0.159 5.159 5 C -0.458 4.458 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.519 5.519 9 Si 0.803 3.197 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.222 3.778 14 O -0.484 6.484 15 C 0.023 3.977 16 H 0.155 0.845 17 C -0.141 4.141 18 C -0.216 4.216 19 C -0.134 4.134 20 C -0.212 4.212 21 C 0.333 3.667 22 O -0.464 6.464 23 N -0.355 5.355 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.294 1.845 8.735 8.932 hybrid contribution -0.061 -0.358 -1.142 1.199 sum -0.355 1.486 7.592 7.744 Atomic orbital electron populations 1.21382 0.95247 1.00399 1.00766 1.22006 0.96268 0.98374 1.00534 1.23067 0.80213 0.97798 1.04683 1.43999 1.06394 1.53697 1.11819 1.19463 1.00297 1.40753 0.85283 0.90832 1.25921 0.95969 0.96344 1.01290 1.69666 1.09587 1.45441 1.27179 0.85217 0.78031 0.78495 0.77945 1.20052 1.20071 1.20132 1.20682 0.87358 0.83004 0.86727 1.90223 1.15107 1.61367 1.81740 1.21589 0.86415 0.96816 0.92923 0.84498 1.21448 0.96774 0.99907 0.95962 1.22069 0.99459 0.92891 1.07210 1.21109 0.97257 0.99187 0.95808 1.22555 0.94482 1.01329 1.02815 1.20164 0.89930 0.82680 0.73876 1.90690 1.39242 1.64607 1.51845 1.46118 1.14368 1.05972 1.68996 0.93888 0.92780 0.93427 0.95298 0.91722 0.89287 0.86764 0.92220 0.89096 0.89645 0.87270 0.91155 0.90586 0.91833 0.88266 0.90270 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.86 71.98 0.71 -3.85 16 2 C -0.13 -5.82 4.90 30.59 0.15 -5.67 16 3 C 0.07 2.80 4.01 86.38 0.35 3.15 16 4 N -0.44 -20.73 1.85 -635.54 -1.17 -21.90 16 5 C -0.33 -17.41 8.62 84.04 0.72 -16.68 16 6 H 0.07 4.13 7.41 -2.91 -0.02 4.11 16 7 C 0.01 0.31 4.86 84.92 0.41 0.73 16 8 N -0.88 -44.03 9.46 21.66 0.20 -43.83 16 9 Si 0.98 41.75 29.55 68.60 2.03 43.78 16 10 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 C 0.43 18.25 3.93 87.66 0.34 18.59 16 14 O -0.60 -28.28 12.46 -3.06 -0.04 -28.32 16 15 C 0.13 3.95 3.16 44.11 0.14 4.09 16 16 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 17 C -0.10 -2.66 5.37 30.19 0.16 -2.49 16 18 C -0.18 -5.41 5.15 29.80 0.15 -5.26 16 19 C -0.10 -2.91 5.67 30.22 0.17 -2.74 16 20 C -0.17 -6.38 4.62 30.10 0.14 -6.24 16 21 C 0.54 19.61 3.38 88.07 0.30 19.91 16 22 O -0.58 -23.64 16.28 -3.00 -0.05 -23.69 16 23 N -0.70 -20.89 2.73 -445.39 -1.22 -22.11 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.43 6.97 -2.39 -0.02 1.42 16 28 H 0.06 2.84 2.76 -2.39 -0.01 2.84 16 29 H 0.09 3.26 3.94 -24.58 -0.10 3.17 16 30 H 0.12 5.51 5.14 -2.63 -0.01 5.49 16 31 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 34 H 0.11 4.22 4.14 -69.70 -0.29 3.93 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 1.76 7.86 -2.39 -0.02 1.75 16 38 H 0.10 4.33 3.64 -2.39 -0.01 4.32 16 39 H 0.08 2.98 8.13 -2.39 -0.02 2.96 16 40 H 0.41 10.29 8.38 -92.70 -0.78 9.51 16 Total: -1.00 -60.78 288.91 3.43 -57.35 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.07 Total: 35.21 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 3.75 Total: 3.51 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.19 Total: -87.84 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.09 Total: -52.01 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.78 3.43 -57.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193885505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.570 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds