Wall clock time and date at job start Mon Mar 30 2020 00:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47268 * 2 1 4 4 C 1.53007 * 109.46742 * 240.00502 * 2 1 3 5 5 N 1.46494 * 109.47267 * 120.00713 * 2 1 3 6 6 C 1.46761 * 124.35581 * 59.99768 * 5 2 1 7 7 C 1.54476 * 105.48022 * 163.00500 * 6 5 2 8 8 H 1.09000 * 110.97066 * 143.57158 * 7 6 5 9 9 C 1.50698 * 110.97189 * 267.30025 * 7 6 5 10 10 O 1.21280 * 119.99901 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00338 * 179.97438 * 9 7 6 12 12 C 1.46497 * 120.00288 * 179.97438 * 11 9 7 13 13 C 1.50694 * 109.47115 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48498 * 109.47200 * 59.99994 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 300.00008 * 17 15 13 21 21 C 1.54628 * 101.75924 * 25.41802 * 7 6 5 22 22 C 1.34425 * 124.34693 * 240.02240 * 5 2 1 23 23 O 1.21277 * 124.93996 * 0.38443 * 22 5 2 24 24 H 1.09005 * 109.46841 * 299.99297 * 1 2 3 25 25 H 1.08995 * 109.47328 * 59.99788 * 1 2 3 26 26 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47330 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47130 * 300.00877 * 3 2 1 29 29 H 1.08998 * 109.46710 * 60.00165 * 3 2 1 30 30 H 1.09003 * 109.46781 * 299.99423 * 4 2 1 31 31 H 1.08995 * 109.47446 * 59.99782 * 4 2 1 32 32 H 1.08999 * 109.46831 * 179.97438 * 4 2 1 33 33 H 1.08997 * 110.24586 * 44.00167 * 6 5 2 34 34 H 1.09007 * 110.24306 * 282.00646 * 6 5 2 35 35 H 0.97001 * 119.99493 * 0.02562 * 11 9 7 36 36 H 1.08998 * 109.46734 * 60.00204 * 12 11 9 37 37 H 1.09002 * 109.47081 * 299.99975 * 12 11 9 38 38 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 39 39 H 1.09002 * 110.48967 * 93.88321 * 21 7 6 40 40 H 1.09005 * 110.48570 * 216.52057 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0184 -0.6907 1.1960 6 6 1.7233 -2.0908 1.5224 7 6 2.7663 -2.4944 2.5880 8 1 2.3294 -3.1666 3.3265 9 6 3.9793 -3.1174 1.9467 10 8 4.0319 -3.2411 0.7414 11 7 5.0058 -3.5372 2.7125 12 6 6.1849 -4.1434 2.0891 13 6 7.1782 -4.5233 3.1567 14 1 6.9536 -4.3328 4.1958 15 6 8.3734 -5.1153 2.8071 16 7 8.6467 -5.3477 1.5418 17 14 9.6080 -5.5793 4.1299 18 1 8.9879 -6.5497 5.0674 19 1 10.8020 -6.1960 3.4981 20 1 10.0154 -4.3616 4.8759 21 6 3.1154 -1.1275 3.2209 22 6 2.7941 -0.1233 2.1359 23 8 3.1800 1.0262 2.1169 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.8294 -2.7153 0.6353 34 1 0.7156 -2.1791 1.9284 35 1 4.9636 -3.4386 3.6766 36 1 6.6419 -3.4285 1.4049 37 1 5.8863 -5.0347 1.5373 38 1 9.4874 -5.7645 1.2959 39 1 2.5001 -0.9468 4.1023 40 1 4.1738 -1.0854 3.4782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243280962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:25 Heat of formation + Delta-G solvation = -80.078809 kcal Electronic energy + Delta-G solvation = -21232.278751 eV Core-core repulsion = 18046.676682 eV Total energy + Delta-G solvation = -3185.602068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93538 -38.69369 -36.64649 -35.41831 -34.25016 -32.39825 -30.50898 -27.89796 -27.45380 -27.35570 -26.90199 -23.72782 -21.88096 -21.44453 -19.57937 -18.56098 -17.59806 -16.56599 -16.15014 -15.36733 -15.30548 -14.95346 -14.54989 -14.27825 -14.03574 -13.79180 -13.67321 -13.42468 -12.86818 -12.79174 -12.25883 -12.08151 -12.05291 -11.98186 -11.79394 -11.60898 -11.49805 -11.40002 -11.13106 -11.00763 -10.99213 -10.88502 -10.33869 -9.44866 -9.32447 -9.13312 -8.76586 -8.59753 -7.95428 -6.19079 -4.26432 2.69213 3.00336 3.19446 3.24173 3.29167 3.30411 3.89963 4.32859 4.34365 4.43053 4.81215 4.84726 4.88614 5.00320 5.16402 5.17584 5.39114 5.43875 5.48737 5.53871 5.61270 5.70950 5.72478 5.78127 5.84082 5.86223 5.91891 6.04042 6.33273 6.35451 6.72586 7.23408 7.25453 7.35201 7.47064 7.61652 7.93531 8.30040 8.54518 8.72580 9.00612 9.40192 10.91037 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.004161 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.619672 B = 6727.431327 C = 6890.637160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 C -0.140 4.140 4 C -0.156 4.156 5 N -0.603 5.603 6 C 0.117 3.883 7 C -0.127 4.127 8 H 0.119 0.881 9 C 0.504 3.496 10 O -0.547 6.547 11 N -0.708 5.708 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.147 4.147 22 C 0.521 3.479 23 O -0.532 6.532 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.391 0.609 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 7.730 0.990 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.091 3.909 3 C -0.197 4.197 4 C -0.214 4.214 5 N -0.337 5.337 6 C -0.007 4.007 7 C -0.149 4.149 8 H 0.137 0.863 9 C 0.288 3.712 10 O -0.426 6.426 11 N -0.356 5.356 12 C 0.130 3.870 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.187 4.187 22 C 0.308 3.692 23 O -0.410 6.410 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.224 0.776 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.651 8.188 -0.104 18.556 hybrid contribution 0.742 -0.480 1.154 1.454 sum -15.909 7.709 1.050 17.710 Atomic orbital electron populations 1.22177 0.94501 1.02283 1.02331 1.20440 0.93463 0.92929 0.84083 1.22088 1.02772 0.93241 1.01616 1.22157 1.02570 1.00651 0.96037 1.48308 1.50743 1.12453 1.22199 1.21927 0.96784 0.82477 0.99473 1.22362 0.96163 0.97448 0.98936 0.86309 1.20057 0.84221 0.79356 0.87605 1.90664 1.80712 1.56906 1.14283 1.46433 1.18960 1.60110 1.10057 1.19116 0.80628 0.93309 0.93955 1.21178 1.02198 1.41911 0.93072 0.91899 1.24949 0.98017 0.95253 0.95713 1.69963 1.24528 1.41809 1.15956 0.86470 0.80319 0.78805 0.81299 1.20047 1.21060 1.20017 1.22382 1.05417 0.92597 0.98349 1.20751 0.77335 0.87792 0.83275 1.90706 1.54609 1.17874 1.77769 0.92347 0.91417 0.92202 0.91195 0.92630 0.91441 0.91944 0.91767 0.91654 0.88480 0.90822 0.77605 0.95551 0.95463 0.92358 0.87123 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.54 37.16 0.32 -1.11 16 2 C 0.17 2.11 1.20 -131.82 -0.16 1.95 16 3 C -0.14 -1.80 7.00 37.15 0.26 -1.54 16 4 C -0.16 -1.93 8.49 37.16 0.32 -1.61 16 5 N -0.60 -8.09 2.76 -157.58 -0.43 -8.53 16 6 C 0.12 1.38 5.93 -3.13 -0.02 1.36 16 7 C -0.13 -1.58 3.54 -90.14 -0.32 -1.90 16 8 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.50 9.31 7.08 -10.99 -0.08 9.23 16 10 O -0.55 -12.29 15.53 5.56 0.09 -12.21 16 11 N -0.71 -14.11 5.47 -61.48 -0.34 -14.45 16 12 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 13 C -0.55 -14.54 9.28 -34.44 -0.32 -14.85 16 14 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.15 -1.80 6.40 -26.74 -0.17 -1.98 16 22 C 0.52 7.94 7.84 -10.86 -0.09 7.86 16 23 O -0.53 -9.65 13.99 5.56 0.08 -9.57 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 27 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.93 7.06 -51.93 -0.37 0.56 16 30 H 0.06 0.76 7.21 -51.93 -0.37 0.39 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.31 6.00 -51.93 -0.31 0.99 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.45 7.84 -51.93 -0.41 1.05 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -33.18 326.83 -6.69 -39.87 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.34 Total: 3.94 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.38 Total: 5.54 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.03 Total: -48.13 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.18 -6.69 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243280962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.210 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds