Wall clock time and date at job start Mon Mar 30 2020 00:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47268 * 2 1 4 4 C 1.53007 * 109.46742 * 240.00502 * 2 1 3 5 5 N 1.46494 * 109.47267 * 120.00713 * 2 1 3 6 6 C 1.46761 * 124.35581 * 59.99768 * 5 2 1 7 7 C 1.54476 * 105.48022 * 163.00500 * 6 5 2 8 8 H 1.09000 * 110.97066 * 143.57158 * 7 6 5 9 9 C 1.50698 * 110.97189 * 267.30025 * 7 6 5 10 10 O 1.21280 * 119.99901 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00338 * 179.97438 * 9 7 6 12 12 C 1.46497 * 120.00288 * 179.97438 * 11 9 7 13 13 C 1.50694 * 109.47115 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48498 * 109.47200 * 59.99994 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 300.00008 * 17 15 13 21 21 C 1.54628 * 101.75924 * 25.41802 * 7 6 5 22 22 C 1.34425 * 124.34693 * 240.02240 * 5 2 1 23 23 O 1.21277 * 124.93996 * 0.38443 * 22 5 2 24 24 H 1.09005 * 109.46841 * 299.99297 * 1 2 3 25 25 H 1.08995 * 109.47328 * 59.99788 * 1 2 3 26 26 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47330 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47130 * 300.00877 * 3 2 1 29 29 H 1.08998 * 109.46710 * 60.00165 * 3 2 1 30 30 H 1.09003 * 109.46781 * 299.99423 * 4 2 1 31 31 H 1.08995 * 109.47446 * 59.99782 * 4 2 1 32 32 H 1.08999 * 109.46831 * 179.97438 * 4 2 1 33 33 H 1.08997 * 110.24586 * 44.00167 * 6 5 2 34 34 H 1.09007 * 110.24306 * 282.00646 * 6 5 2 35 35 H 0.97001 * 119.99493 * 0.02562 * 11 9 7 36 36 H 1.08998 * 109.46734 * 60.00204 * 12 11 9 37 37 H 1.09002 * 109.47081 * 299.99975 * 12 11 9 38 38 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 39 39 H 1.09002 * 110.48967 * 93.88321 * 21 7 6 40 40 H 1.09005 * 110.48570 * 216.52057 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0184 -0.6907 1.1960 6 6 1.7233 -2.0908 1.5224 7 6 2.7663 -2.4944 2.5880 8 1 2.3294 -3.1666 3.3265 9 6 3.9793 -3.1174 1.9467 10 8 4.0319 -3.2411 0.7414 11 7 5.0058 -3.5372 2.7125 12 6 6.1849 -4.1434 2.0891 13 6 7.1782 -4.5233 3.1567 14 1 6.9536 -4.3328 4.1958 15 6 8.3734 -5.1153 2.8071 16 7 8.6467 -5.3477 1.5418 17 14 9.6080 -5.5793 4.1299 18 1 8.9879 -6.5497 5.0674 19 1 10.8020 -6.1960 3.4981 20 1 10.0154 -4.3616 4.8759 21 6 3.1154 -1.1275 3.2209 22 6 2.7941 -0.1233 2.1359 23 8 3.1800 1.0262 2.1169 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.8294 -2.7153 0.6353 34 1 0.7156 -2.1791 1.9284 35 1 4.9636 -3.4386 3.6766 36 1 6.6419 -3.4285 1.4049 37 1 5.8863 -5.0347 1.5373 38 1 9.4874 -5.7645 1.2959 39 1 2.5001 -0.9468 4.1023 40 1 4.1738 -1.0854 3.4782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243280962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:24 Heat of formation + Delta-G solvation = -104.299469 kcal Electronic energy + Delta-G solvation = -21233.329037 eV Core-core repulsion = 18046.676682 eV Total energy + Delta-G solvation = -3186.652355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07003 -40.19300 -37.76056 -36.58299 -36.09792 -34.36055 -31.66514 -29.27284 -28.92152 -28.23291 -28.02751 -25.39183 -23.47226 -22.48899 -21.11388 -19.64549 -19.12419 -17.91202 -17.58009 -17.02875 -16.68246 -16.36084 -16.03809 -15.76419 -15.08988 -14.94850 -14.75073 -14.62334 -14.24070 -14.14587 -13.96694 -13.56484 -13.14035 -13.04475 -12.97999 -12.84796 -12.71040 -12.62957 -12.58345 -12.41574 -12.22729 -12.11832 -11.95413 -11.51418 -10.79434 -10.72718 -10.46166 -9.83275 -9.63474 -8.29484 -6.46081 1.43243 1.47174 1.55125 1.55808 1.71668 2.03334 2.30969 2.54363 3.05722 3.31861 3.37966 3.78522 3.85267 3.92518 3.99716 4.09128 4.41609 4.55282 4.60582 4.67307 4.69140 4.77275 4.79559 4.85904 4.89237 4.93191 4.93585 5.11963 5.16979 5.23322 5.27961 5.37140 5.48247 5.68535 5.72076 5.84645 6.19049 6.65141 6.89337 7.18587 7.23465 7.48524 8.82461 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.004161 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.619672 B = 6727.431327 C = 6890.637160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.165 3.835 3 C -0.132 4.132 4 C -0.151 4.151 5 N -0.605 5.605 6 C 0.114 3.886 7 C -0.110 4.110 8 H 0.171 0.829 9 C 0.497 3.503 10 O -0.594 6.594 11 N -0.704 5.704 12 C 0.268 3.732 13 C -0.556 4.556 14 H 0.086 0.914 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.138 4.138 22 C 0.502 3.498 23 O -0.574 6.574 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.410 0.590 36 H -0.020 1.020 37 H -0.010 1.010 38 H 0.268 0.732 39 H 0.158 0.842 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.274 7.492 3.447 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.209 4.209 5 N -0.338 5.338 6 C -0.008 4.008 7 C -0.131 4.131 8 H 0.189 0.811 9 C 0.284 3.716 10 O -0.475 6.475 11 N -0.353 5.353 12 C 0.145 3.855 13 C -0.594 4.594 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.178 4.178 22 C 0.291 3.709 23 O -0.454 6.454 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.246 0.754 36 H -0.002 1.002 37 H 0.008 0.992 38 H 0.077 0.923 39 H 0.175 0.825 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.925 7.946 2.383 20.663 hybrid contribution 1.408 -0.381 0.272 1.484 sum -17.517 7.565 2.655 19.264 Atomic orbital electron populations 1.22092 0.91303 1.03448 1.03391 1.20654 0.95801 0.91954 0.83433 1.21982 1.00264 0.94400 1.02289 1.22121 0.99881 1.01237 0.97650 1.48527 1.50090 1.13136 1.22039 1.22158 0.98851 0.80998 0.98791 1.22401 0.92977 0.97954 0.99754 0.81129 1.21232 0.85265 0.78009 0.87092 1.90650 1.81783 1.58352 1.16722 1.46148 1.17876 1.60255 1.11068 1.18497 0.82703 0.90869 0.93431 1.21608 1.02332 1.41425 0.94041 0.89618 1.26063 1.00412 0.94994 0.98100 1.70135 1.25293 1.42971 1.18669 0.85227 0.77109 0.78941 0.78077 1.18310 1.21267 1.18876 1.22434 1.05492 0.90991 0.98902 1.21378 0.77215 0.87907 0.84422 1.90684 1.56111 1.19732 1.78909 0.91990 0.89707 0.90930 0.94967 0.90236 0.92359 0.91871 0.89324 0.95689 0.90350 0.85852 0.75414 1.00234 0.99171 0.92314 0.82464 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.54 71.98 0.61 -1.60 16 2 C 0.16 3.84 1.20 3.61 0.00 3.84 16 3 C -0.13 -3.43 7.00 71.98 0.50 -2.93 16 4 C -0.15 -3.74 8.49 71.98 0.61 -3.13 16 5 N -0.60 -15.49 2.76 -771.04 -2.13 -17.62 16 6 C 0.11 2.38 5.93 86.83 0.51 2.89 16 7 C -0.11 -2.40 3.54 -10.48 -0.04 -2.44 16 8 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 9 C 0.50 18.33 7.08 87.66 0.62 18.95 16 10 O -0.59 -27.82 15.53 -3.03 -0.05 -27.87 16 11 N -0.70 -28.20 5.47 -466.81 -2.55 -30.75 16 12 C 0.27 14.52 5.43 85.63 0.46 14.98 16 13 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 14 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 17 Si 0.98 42.08 29.54 68.60 2.03 44.10 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 C -0.14 -3.02 6.40 30.59 0.20 -2.83 16 22 C 0.50 14.97 7.84 87.90 0.69 15.66 16 23 O -0.57 -21.28 13.99 -3.02 -0.04 -21.32 16 24 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.95 7.90 -2.39 -0.02 0.93 16 27 H 0.03 1.06 7.08 -2.39 -0.02 1.04 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.61 7.06 -2.39 -0.02 1.59 16 30 H 0.06 1.53 7.21 -2.39 -0.02 1.52 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 2.00 6.00 -2.39 -0.01 1.99 16 34 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.41 13.18 8.32 -92.71 -0.77 12.41 16 36 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.39 7.84 -2.38 -0.02 2.37 16 Total: -1.00 -79.08 326.83 2.68 -76.40 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.26 Total: 18.66 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 4.88 Total: 14.44 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.40 Total: -104.42 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.09 Total: -49.19 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -79.08 2.68 -76.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243280962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.896 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds