Wall clock time and date at job start Mon Mar 30 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47302 * 2 1 4 4 N 1.46500 * 109.46809 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99799 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00036 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00142 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.46856 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47185 * 180.02562 * 8 7 5 10 10 O 1.21293 * 119.99719 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00479 * 180.02562 * 9 8 7 12 12 C 1.37102 * 120.00350 * 180.02562 * 11 9 8 13 13 H 1.07993 * 120.00099 * 224.28792 * 12 11 9 14 14 C 1.38954 * 119.99884 * 44.28618 * 12 11 9 15 15 N 1.31413 * 119.99879 * 18.20885 * 14 12 11 16 16 Si 1.86792 * 119.99944 * 198.21050 * 14 12 11 17 17 H 1.48500 * 109.47399 * 59.99962 * 16 14 12 18 18 H 1.48501 * 109.47101 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47282 * 300.00001 * 16 14 12 20 20 C 1.46500 * 120.00124 * 359.97438 * 11 9 8 21 21 C 1.52997 * 117.50181 * 183.22378 * 20 11 9 22 22 C 1.52995 * 60.00258 * 252.51417 * 21 20 11 23 23 H 1.08997 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47092 * 299.99857 * 1 2 3 25 25 H 1.09008 * 109.46680 * 59.99510 * 1 2 3 26 26 H 1.09001 * 109.47092 * 240.00143 * 2 1 3 27 27 H 1.09001 * 109.47348 * 120.00528 * 2 1 3 28 28 H 1.09000 * 109.46409 * 60.00011 * 3 2 1 29 29 H 1.08995 * 109.47336 * 299.99830 * 3 2 1 30 30 H 0.96995 * 120.00531 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47092 * 59.99908 * 7 5 4 32 32 H 1.08995 * 109.46936 * 299.99839 * 7 5 4 33 33 H 1.08999 * 109.47664 * 299.99529 * 8 7 5 34 34 H 1.09001 * 109.47371 * 60.00047 * 8 7 5 35 35 H 0.97001 * 120.00005 * 174.92522 * 15 14 12 36 36 H 1.09006 * 115.54721 * 328.94137 * 20 11 9 37 37 H 1.08994 * 117.49722 * 0.02562 * 21 20 11 38 38 H 1.09005 * 117.49809 * 145.02459 * 21 20 11 39 39 H 1.09002 * 117.50208 * 252.51013 * 22 21 20 40 40 H 1.09000 * 117.52161 * 107.47861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6096 0.0025 8 6 6.1959 4.0521 0.0036 9 6 7.7030 4.0521 0.0042 10 8 8.3094 3.0017 0.0042 11 7 8.3769 5.2192 0.0058 12 6 9.7479 5.2192 0.0058 13 1 10.2879 5.8878 0.6597 14 6 10.4426 4.3589 -0.8356 15 7 9.8349 3.8143 -1.8657 16 14 12.2404 3.9765 -0.5025 17 1 12.3736 3.3521 0.8382 18 1 12.7470 3.0392 -1.5370 19 1 13.0298 5.2336 -0.5437 20 6 7.6445 6.4880 0.0064 21 6 8.4648 7.7773 -0.0682 22 6 7.7797 7.3812 1.2412 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9564 -0.8899 30 1 3.9900 0.6024 0.0006 31 1 6.0500 2.0958 -0.8873 32 1 6.0485 2.0957 0.8927 33 1 5.8334 4.5664 -0.8864 34 1 5.8319 4.5655 0.8936 35 1 10.3372 3.2729 -2.4946 36 1 6.6802 6.4744 -0.5018 37 1 9.5494 7.6816 -0.1181 38 1 8.0404 8.6124 -0.6257 39 1 6.9046 7.9555 1.5453 40 1 8.4133 7.0246 2.0533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264224347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:24 Heat of formation + Delta-G solvation = -51.915822 kcal Electronic energy + Delta-G solvation = -20499.502137 eV Core-core repulsion = 17315.121308 eV Total energy + Delta-G solvation = -3184.380830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.58721 -38.41582 -36.11381 -35.77898 -33.01780 -32.67570 -31.76425 -30.71400 -27.03557 -25.41042 -23.50723 -21.81705 -21.61481 -21.05651 -20.13286 -18.86603 -17.11439 -16.03248 -16.00545 -15.97979 -15.68282 -15.08314 -14.63812 -14.19939 -13.86419 -13.71368 -13.36026 -13.02626 -12.69357 -12.55145 -12.29388 -12.06140 -11.85119 -11.39662 -11.20314 -11.13134 -10.97923 -10.82824 -10.80558 -10.70793 -10.35514 -10.14118 -9.89638 -9.66570 -9.56269 -9.02185 -8.65718 -7.95018 -6.96543 -6.06815 -3.81732 2.89250 3.28064 3.33063 3.39102 3.42674 4.19560 4.32770 4.60583 4.71294 4.84548 4.86687 4.97978 5.12129 5.34815 5.36457 5.38222 5.50484 5.60295 5.67712 5.72432 5.73399 5.85703 5.87566 5.87914 5.97213 6.14032 6.28064 6.30868 6.45906 6.55140 6.58002 6.63799 6.84516 7.00182 7.58797 7.66080 8.32208 8.41330 9.12129 9.21204 9.72383 10.35697 11.02534 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.004178 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.486890 B = 6700.222565 C = 7624.589044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.739 5.739 5 C 0.514 3.486 6 O -0.545 6.545 7 C -0.118 4.118 8 C -0.116 4.116 9 C 0.484 3.516 10 O -0.539 6.539 11 N -0.429 5.429 12 C -0.349 4.349 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.835 5.835 16 Si 0.913 3.087 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.279 1.279 20 C 0.076 3.924 21 C -0.175 4.175 22 C -0.207 4.207 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.263 0.737 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 -4.108 2.880 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.392 5.392 5 C 0.302 3.698 6 O -0.421 6.421 7 C -0.158 4.158 8 C -0.157 4.157 9 C 0.272 3.728 10 O -0.418 6.418 11 N -0.150 5.150 12 C -0.475 4.475 13 H 0.093 0.907 14 C -0.137 4.137 15 N -0.468 5.468 16 Si 0.741 3.259 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.204 1.204 20 C -0.030 4.030 21 C -0.212 4.212 22 C -0.247 4.247 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.589 -4.085 2.736 14.451 hybrid contribution 1.021 -0.499 -0.030 1.137 sum -12.568 -4.584 2.706 13.648 Atomic orbital electron populations 1.21678 0.94724 1.02002 1.02298 1.21744 0.96833 0.96102 1.02770 1.21348 0.80252 0.96801 1.02223 1.46087 1.07001 1.09139 1.76980 1.21120 0.90913 0.83141 0.74638 1.90665 1.70856 1.31355 1.49273 1.21339 0.89055 0.99965 1.05484 1.21308 0.95473 0.95421 1.03463 1.19792 0.87561 0.84459 0.81018 1.90505 1.69774 1.30526 1.50992 1.42761 1.05025 1.01076 1.66110 1.18804 0.79871 1.25609 1.23252 0.90655 1.25234 0.98705 0.96054 0.93685 1.69823 1.36592 1.30093 1.10339 0.86267 0.83251 0.78075 0.78337 1.20007 1.21245 1.20441 1.21720 0.96779 0.84866 0.99674 1.23055 1.00973 0.97529 0.99684 1.23298 1.02823 1.05508 0.93024 0.92294 0.92392 0.92379 0.91279 0.91307 0.91745 0.91724 0.76479 0.88228 0.88559 0.90217 0.90208 0.92653 0.87812 0.87568 0.89851 0.89790 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.14 -1.02 6.05 -26.73 -0.16 -1.18 16 3 C 0.12 1.23 5.68 -4.04 -0.02 1.21 16 4 N -0.74 -8.88 5.56 -60.29 -0.33 -9.22 16 5 C 0.51 8.22 7.83 -10.99 -0.09 8.13 16 6 O -0.54 -10.45 15.98 5.55 0.09 -10.36 16 7 C -0.12 -2.05 4.99 -27.88 -0.14 -2.19 16 8 C -0.12 -2.35 3.61 -27.88 -0.10 -2.45 16 9 C 0.48 12.34 6.96 -10.99 -0.08 12.27 16 10 O -0.54 -15.55 13.75 5.55 0.08 -15.47 16 11 N -0.43 -10.98 2.83 -107.73 -0.31 -11.29 16 12 C -0.35 -9.64 7.92 -14.93 -0.12 -9.75 16 13 H 0.08 2.02 7.26 -52.49 -0.38 1.64 16 14 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 15 N -0.84 -24.79 11.74 55.50 0.65 -24.14 16 16 Si 0.91 22.04 29.59 -169.99 -5.03 17.01 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.08 1.59 5.87 -67.93 -0.40 1.20 16 21 C -0.17 -3.29 9.80 -26.73 -0.26 -3.56 16 22 C -0.21 -3.74 10.36 -26.73 -0.28 -4.01 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.40 3.82 8.47 -40.82 -0.35 3.47 16 31 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 32 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.08 1.62 7.52 -51.93 -0.39 1.23 16 34 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 35 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 36 H 0.10 2.03 6.96 -51.93 -0.36 1.66 16 37 H 0.11 2.19 6.72 -51.93 -0.35 1.84 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -34.26 335.07 -7.61 -41.86 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.45 Total: 5.48 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.35 Total: 1.07 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.01 Total: -44.65 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.16 Total: -25.83 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.26 -7.61 -41.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264224347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.052 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds