Wall clock time and date at job start Mon Mar 30 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47302 * 2 1 4 4 N 1.46500 * 109.46809 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99799 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00036 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00142 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.46856 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47185 * 180.02562 * 8 7 5 10 10 O 1.21293 * 119.99719 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00479 * 180.02562 * 9 8 7 12 12 C 1.37102 * 120.00350 * 180.02562 * 11 9 8 13 13 H 1.07993 * 120.00099 * 224.28792 * 12 11 9 14 14 C 1.38954 * 119.99884 * 44.28618 * 12 11 9 15 15 N 1.31413 * 119.99879 * 18.20885 * 14 12 11 16 16 Si 1.86792 * 119.99944 * 198.21050 * 14 12 11 17 17 H 1.48500 * 109.47399 * 59.99962 * 16 14 12 18 18 H 1.48501 * 109.47101 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47282 * 300.00001 * 16 14 12 20 20 C 1.46500 * 120.00124 * 359.97438 * 11 9 8 21 21 C 1.52997 * 117.50181 * 183.22378 * 20 11 9 22 22 C 1.52995 * 60.00258 * 252.51417 * 21 20 11 23 23 H 1.08997 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47092 * 299.99857 * 1 2 3 25 25 H 1.09008 * 109.46680 * 59.99510 * 1 2 3 26 26 H 1.09001 * 109.47092 * 240.00143 * 2 1 3 27 27 H 1.09001 * 109.47348 * 120.00528 * 2 1 3 28 28 H 1.09000 * 109.46409 * 60.00011 * 3 2 1 29 29 H 1.08995 * 109.47336 * 299.99830 * 3 2 1 30 30 H 0.96995 * 120.00531 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47092 * 59.99908 * 7 5 4 32 32 H 1.08995 * 109.46936 * 299.99839 * 7 5 4 33 33 H 1.08999 * 109.47664 * 299.99529 * 8 7 5 34 34 H 1.09001 * 109.47371 * 60.00047 * 8 7 5 35 35 H 0.97001 * 120.00005 * 174.92522 * 15 14 12 36 36 H 1.09006 * 115.54721 * 328.94137 * 20 11 9 37 37 H 1.08994 * 117.49722 * 0.02562 * 21 20 11 38 38 H 1.09005 * 117.49809 * 145.02459 * 21 20 11 39 39 H 1.09002 * 117.50208 * 252.51013 * 22 21 20 40 40 H 1.09000 * 117.52161 * 107.47861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6096 0.0025 8 6 6.1959 4.0521 0.0036 9 6 7.7030 4.0521 0.0042 10 8 8.3094 3.0017 0.0042 11 7 8.3769 5.2192 0.0058 12 6 9.7479 5.2192 0.0058 13 1 10.2879 5.8878 0.6597 14 6 10.4426 4.3589 -0.8356 15 7 9.8349 3.8143 -1.8657 16 14 12.2404 3.9765 -0.5025 17 1 12.3736 3.3521 0.8382 18 1 12.7470 3.0392 -1.5370 19 1 13.0298 5.2336 -0.5437 20 6 7.6445 6.4880 0.0064 21 6 8.4648 7.7773 -0.0682 22 6 7.7797 7.3812 1.2412 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9564 -0.8899 30 1 3.9900 0.6024 0.0006 31 1 6.0500 2.0958 -0.8873 32 1 6.0485 2.0957 0.8927 33 1 5.8334 4.5664 -0.8864 34 1 5.8319 4.5655 0.8936 35 1 10.3372 3.2729 -2.4946 36 1 6.6802 6.4744 -0.5018 37 1 9.5494 7.6816 -0.1181 38 1 8.0404 8.6124 -0.6257 39 1 6.9046 7.9555 1.5453 40 1 8.4133 7.0246 2.0533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264224347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:23 Heat of formation + Delta-G solvation = -74.844710 kcal Electronic energy + Delta-G solvation = -20500.496409 eV Core-core repulsion = 17315.121308 eV Total energy + Delta-G solvation = -3185.375101 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94759 -40.17732 -37.80494 -36.78701 -34.91318 -33.83533 -33.25242 -32.59760 -28.35880 -26.92666 -25.06676 -23.12687 -22.76139 -22.54230 -21.49338 -20.63432 -18.67147 -17.87572 -17.35645 -17.08285 -17.05316 -16.57931 -16.22981 -15.88802 -15.48991 -15.11343 -14.75659 -14.15922 -14.00454 -13.79961 -13.77254 -13.32256 -13.07670 -12.87580 -12.80174 -12.70318 -12.55176 -12.24172 -12.12339 -12.02217 -11.98041 -11.74607 -11.63853 -11.21963 -10.90584 -10.69883 -10.10065 -9.93875 -8.95106 -8.17802 -5.96423 1.38136 1.46489 1.50251 1.60622 2.15676 2.28653 2.43196 3.11910 3.15483 3.37356 3.76135 3.93373 4.04842 4.07832 4.15128 4.21814 4.29598 4.32188 4.37451 4.52843 4.67879 4.72006 4.76045 4.89088 4.89389 4.97929 5.05125 5.07584 5.15572 5.25196 5.29373 5.35111 5.46583 5.50634 5.51445 6.22586 6.51582 7.05754 7.20560 7.22143 7.72177 8.37217 8.91088 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.004178 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.486890 B = 6700.222565 C = 7624.589044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.115 3.885 4 N -0.722 5.722 5 C 0.520 3.480 6 O -0.579 6.579 7 C -0.111 4.111 8 C -0.100 4.100 9 C 0.469 3.531 10 O -0.583 6.583 11 N -0.445 5.445 12 C -0.359 4.359 13 H 0.077 0.923 14 C 0.022 3.978 15 N -0.872 5.872 16 Si 0.973 3.027 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.042 3.958 21 C -0.169 4.169 22 C -0.180 4.180 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.415 0.585 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.260 0.740 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 -3.890 3.573 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.008 4.008 4 N -0.374 5.374 5 C 0.307 3.693 6 O -0.459 6.459 7 C -0.151 4.151 8 C -0.141 4.141 9 C 0.258 3.742 10 O -0.465 6.465 11 N -0.165 5.165 12 C -0.486 4.486 13 H 0.094 0.906 14 C -0.184 4.184 15 N -0.507 5.507 16 Si 0.798 3.202 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.183 1.183 20 C -0.063 4.063 21 C -0.206 4.206 22 C -0.218 4.218 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.252 0.748 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.616 -3.859 3.439 15.503 hybrid contribution 1.281 -0.524 -0.199 1.399 sum -13.335 -4.384 3.240 14.406 Atomic orbital electron populations 1.21688 0.93884 1.02843 1.02271 1.21705 0.97429 0.93836 1.03616 1.21503 0.78831 0.98953 1.01533 1.45970 1.07906 1.08574 1.74959 1.20757 0.90139 0.83723 0.74657 1.90651 1.71167 1.32719 1.51337 1.21208 0.90344 0.98076 1.05477 1.21138 0.91682 0.97513 1.03771 1.20634 0.89590 0.83944 0.79996 1.90457 1.71171 1.31992 1.52917 1.43013 1.04882 1.02915 1.65735 1.19072 0.81366 1.25376 1.22824 0.90576 1.26071 1.02818 0.96003 0.93529 1.69939 1.38042 1.31320 1.11391 0.85336 0.78881 0.78465 0.77533 1.20616 1.21174 1.18312 1.21991 0.97538 0.83803 1.02990 1.23106 0.99656 0.97134 1.00715 1.23307 1.03430 1.03475 0.91626 0.91006 0.92383 0.92530 0.90544 0.90332 0.92315 0.92593 0.74838 0.88964 0.87979 0.90390 0.89082 0.93096 0.86436 0.89814 0.86624 0.86086 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.13 -1.62 6.05 30.60 0.19 -1.43 16 3 C 0.12 2.25 5.68 86.38 0.49 2.74 16 4 N -0.72 -16.33 5.56 -463.05 -2.57 -18.90 16 5 C 0.52 16.21 7.83 87.66 0.69 16.90 16 6 O -0.58 -21.83 15.98 -3.05 -0.05 -21.88 16 7 C -0.11 -3.83 4.99 29.85 0.15 -3.68 16 8 C -0.10 -4.07 3.61 29.85 0.11 -3.96 16 9 C 0.47 24.33 6.96 87.66 0.61 24.94 16 10 O -0.58 -34.55 13.75 -3.07 -0.04 -34.59 16 11 N -0.45 -23.00 2.83 -613.13 -1.74 -24.74 16 12 C -0.36 -20.10 7.92 84.04 0.67 -19.44 16 13 H 0.08 4.12 7.26 -2.91 -0.02 4.10 16 14 C 0.02 1.26 4.39 84.93 0.37 1.63 16 15 N -0.87 -53.06 11.74 21.66 0.25 -52.81 16 16 Si 0.97 45.83 29.59 68.60 2.03 47.86 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 20 C 0.04 1.72 5.87 44.99 0.26 1.98 16 21 C -0.17 -6.06 9.80 30.59 0.30 -5.76 16 22 C -0.18 -6.05 10.36 30.59 0.32 -5.73 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.42 7.16 8.47 -92.71 -0.79 6.37 16 31 H 0.09 3.32 8.10 -2.39 -0.02 3.30 16 32 H 0.10 3.38 8.10 -2.39 -0.02 3.36 16 33 H 0.08 3.18 7.52 -2.39 -0.02 3.16 16 34 H 0.09 3.46 8.06 -2.39 -0.02 3.44 16 35 H 0.26 15.21 8.32 -92.71 -0.77 14.44 16 36 H 0.12 4.44 6.96 -2.38 -0.02 4.43 16 37 H 0.08 3.40 6.72 -2.39 -0.02 3.39 16 38 H 0.12 3.38 8.14 -2.38 -0.02 3.36 16 39 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -75.18 335.07 2.98 -72.20 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.24 Total: 25.60 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.86 Total: 7.27 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -4.06 Total: -96.45 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.09 Total: -56.47 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.18 2.98 -72.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264224347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.648 kcal (2) G-P(sol) polarization free energy of solvation -75.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds