Wall clock time and date at job start Mon Mar 30 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46760 * 55.00438 * 3 2 1 5 5 C 1.50700 * 109.46982 * 175.00264 * 3 2 1 6 6 O 1.21278 * 119.99981 * 120.00123 * 5 3 2 7 7 N 1.34777 * 120.00042 * 300.00238 * 5 3 2 8 8 C 1.46507 * 119.99840 * 0.02562 * 7 5 3 9 9 C 1.46498 * 120.00214 * 180.02562 * 7 5 3 10 10 C 1.50696 * 109.47150 * 89.99920 * 9 7 5 11 11 H 1.08000 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.37886 * 119.99967 * 180.02562 * 10 9 7 13 13 N 1.31515 * 119.99660 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47036 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47048 * 119.99962 * 14 12 10 17 17 H 1.48504 * 109.47043 * 240.00089 * 14 12 10 18 18 N 1.46497 * 109.46943 * 295.00063 * 3 2 1 19 19 C 1.46768 * 124.34381 * 120.00561 * 18 3 2 20 20 C 1.54487 * 105.46844 * 197.01165 * 19 18 3 21 21 C 1.54619 * 101.76557 * 334.58255 * 20 19 18 22 22 C 1.34413 * 124.35463 * 299.99759 * 18 3 2 23 23 O 1.21283 * 124.94031 * 359.62849 * 22 18 3 24 24 H 1.08993 * 109.46764 * 299.99488 * 1 2 3 25 25 H 1.09000 * 109.47034 * 60.00005 * 1 2 3 26 26 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46905 * 240.00166 * 2 1 3 28 28 H 1.08995 * 109.47225 * 120.00700 * 2 1 3 29 29 H 1.08996 * 109.47201 * 90.00358 * 8 7 5 30 30 H 1.09002 * 109.46997 * 210.00409 * 8 7 5 31 31 H 1.09003 * 109.47047 * 329.99467 * 8 7 5 32 32 H 1.09004 * 109.47306 * 209.99822 * 9 7 5 33 33 H 1.09001 * 109.47118 * 329.99781 * 9 7 5 34 34 H 0.97000 * 119.99391 * 180.02562 * 13 12 10 35 35 H 1.09000 * 110.25007 * 78.01166 * 19 18 3 36 36 H 1.09004 * 110.24485 * 316.00872 * 19 18 3 37 37 H 1.08996 * 110.96729 * 92.70209 * 20 19 18 38 38 H 1.08999 * 110.96649 * 216.46453 * 20 19 18 39 39 H 1.09007 * 110.48907 * 143.47513 * 21 20 19 40 40 H 1.09001 * 110.48711 * 265.98708 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1299 0.8911 1.2030 8 6 3.3088 0.2874 2.2556 9 6 5.5899 0.8933 1.3236 10 6 6.0330 2.1444 2.0372 11 1 5.3005 2.8660 2.3675 12 6 7.3739 2.3684 2.2676 13 7 8.2660 1.4899 1.8650 14 14 7.9234 3.9196 3.1515 15 1 6.7345 4.7389 3.4986 16 1 8.6496 3.5508 4.3933 17 1 8.8228 4.7018 2.2657 18 7 1.6525 2.0975 -1.2518 19 6 0.8076 3.2949 -1.3327 20 6 0.3194 3.3565 -2.7971 21 6 1.4366 2.5828 -3.5347 22 6 2.0249 1.6791 -2.4737 23 8 2.7296 0.7168 -2.6935 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.1467 -0.7666 2.0304 30 1 3.8206 0.3799 3.2135 31 1 2.3482 0.8002 2.3060 32 1 5.9089 0.0190 1.8911 33 1 6.0366 0.8642 0.3298 34 1 9.2093 1.6474 2.0274 35 1 1.3897 4.1843 -1.0915 36 1 -0.0416 3.2038 -0.6555 37 1 -0.6418 2.8549 -2.9092 38 1 0.2629 4.3874 -3.1464 39 1 1.0177 1.9921 -4.3495 40 1 2.1917 3.2718 -3.9134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266125244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:13 Heat of formation + Delta-G solvation = -87.582812 kcal Electronic energy + Delta-G solvation = -21760.858722 eV Core-core repulsion = 18574.931255 eV Total energy + Delta-G solvation = -3185.927466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85416 -40.15730 -37.38945 -36.69709 -35.88389 -34.58556 -31.91150 -30.17924 -28.44112 -28.12233 -27.20710 -24.81021 -23.15250 -22.67397 -21.13334 -19.60247 -18.74713 -18.22799 -17.83353 -17.02056 -16.89975 -16.43507 -16.12532 -15.81504 -15.23882 -14.74388 -14.61206 -14.33967 -14.30041 -13.90017 -13.74235 -13.56279 -13.49721 -13.32400 -13.17015 -12.82729 -12.81399 -12.58243 -12.36983 -12.24417 -12.10867 -11.80627 -11.75256 -11.66139 -10.73458 -10.69303 -10.61325 -9.62078 -9.43289 -8.25548 -6.41725 1.33626 1.36712 1.48659 1.63906 1.79277 1.98399 2.32514 2.50765 3.03592 3.44442 3.62823 3.71947 3.88675 3.95159 4.08755 4.20695 4.35654 4.43854 4.51059 4.64576 4.69329 4.71360 4.78680 4.85876 4.92143 4.95457 5.10011 5.11138 5.17003 5.19349 5.26041 5.39438 5.51957 5.61561 5.80989 6.01436 6.25126 6.65555 6.73697 7.23206 7.29085 7.46846 8.82326 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.005546 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.557563 B = 5047.751422 C = 5466.928188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C 0.151 3.849 4 H 0.144 0.856 5 C 0.481 3.519 6 O -0.587 6.587 7 N -0.609 5.609 8 C 0.074 3.926 9 C 0.261 3.739 10 C -0.540 4.540 11 H 0.057 0.943 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.975 3.025 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.283 1.283 18 N -0.606 5.606 19 C 0.093 3.907 20 C -0.110 4.110 21 C -0.152 4.152 22 C 0.502 3.498 23 O -0.582 6.582 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.022 0.978 33 H -0.015 1.015 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.823 2.920 -2.022 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.181 4.181 3 C 0.044 3.956 4 H 0.162 0.838 5 C 0.268 3.732 6 O -0.466 6.466 7 N -0.341 5.341 8 C -0.067 4.067 9 C 0.140 3.860 10 C -0.578 4.578 11 H 0.075 0.925 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.209 1.209 18 N -0.339 5.339 19 C -0.028 4.028 20 C -0.147 4.147 21 C -0.192 4.192 22 C 0.292 3.708 23 O -0.462 6.462 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.040 0.960 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.920 2.607 -2.499 23.202 hybrid contribution 1.592 0.364 0.179 1.643 sum -21.327 2.971 -2.320 21.658 Atomic orbital electron populations 1.21645 0.91516 1.02846 1.02936 1.22118 0.99396 0.93029 1.03574 1.20951 0.88928 0.97192 0.88537 0.83835 1.21763 0.92247 0.77906 0.81279 1.90632 1.66870 1.47271 1.41864 1.48110 1.08022 1.57091 1.20925 1.22146 0.95774 0.98258 0.90550 1.18711 0.76155 0.96441 0.94720 1.21703 0.92695 1.06138 1.37290 0.92494 1.25982 0.96482 1.00532 0.96611 1.70092 1.01991 1.37439 1.47666 0.85267 0.78353 0.78409 0.78143 1.18655 1.19151 1.20933 1.48157 1.51256 1.29922 1.04571 1.22483 0.94389 0.85722 1.00234 1.22614 0.97643 1.02954 0.91497 1.22365 1.00501 0.98993 0.97356 1.21721 0.78674 0.84444 0.85984 1.90664 1.39261 1.31492 1.84756 0.89853 0.92870 0.91528 0.94082 0.88242 0.91185 0.91020 0.88163 0.95952 0.99708 0.92393 0.91800 0.86736 0.87535 0.86625 0.87010 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.80 71.98 0.71 -1.48 16 2 C -0.14 -3.76 5.01 30.60 0.15 -3.60 16 3 C 0.15 4.62 1.87 44.25 0.08 4.70 16 4 H 0.14 3.22 7.33 -2.39 -0.02 3.20 16 5 C 0.48 22.11 6.77 87.66 0.59 22.70 16 6 O -0.59 -34.16 14.45 11.49 0.17 -34.00 16 7 N -0.61 -27.79 2.86 -851.12 -2.43 -30.22 16 8 C 0.07 2.27 8.81 127.77 1.13 3.40 16 9 C 0.26 15.17 5.16 85.63 0.44 15.61 16 10 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 11 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.93 -58.86 13.29 21.45 0.28 -58.58 16 14 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 18 N -0.61 -17.53 2.08 -798.19 -1.66 -19.19 16 19 C 0.09 1.58 7.30 86.83 0.63 2.22 16 20 C -0.11 -1.32 7.18 31.65 0.23 -1.09 16 21 C -0.15 -3.35 6.86 30.58 0.21 -3.14 16 22 C 0.50 17.56 6.69 87.90 0.59 18.15 16 23 O -0.58 -27.47 15.34 11.47 0.18 -27.29 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.89 7.75 -2.39 -0.02 0.88 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 1.44 6.65 -2.39 -0.02 1.42 16 28 H 0.10 2.36 4.45 -2.39 -0.01 2.35 16 29 H 0.07 1.85 6.86 -2.39 -0.02 1.83 16 30 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.10 2.18 6.06 -2.39 -0.01 2.16 16 32 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 33 H -0.02 -1.05 7.42 -2.39 -0.02 -1.07 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -92.59 323.07 5.05 -87.54 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.02 Total: 7.82 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 5.46 Total: 25.98 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.80 Total: -107.99 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: 0.34 Total: -61.29 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -92.59 5.05 -87.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266125244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.043 kcal (2) G-P(sol) polarization free energy of solvation -92.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds