Wall clock time and date at job start Mon Mar 30 2020 01:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47336 * 2 1 4 4 H 1.08997 * 109.46579 * 55.00233 * 3 2 1 5 5 C 1.52994 * 109.47125 * 295.00602 * 3 2 1 6 6 C 1.53002 * 109.47077 * 175.00153 * 3 2 1 7 7 H 1.09003 * 110.53204 * 57.17373 * 6 3 2 8 8 N 1.47312 * 110.73208 * 294.25019 * 6 3 2 9 9 C 1.34528 * 106.61878 * 241.41398 * 8 6 3 10 10 O 1.21533 * 123.76761 * 180.26708 * 9 8 6 11 11 N 1.33794 * 112.45680 * 359.97438 * 9 8 6 12 12 C 1.46503 * 124.17510 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47078 * 89.97638 * 12 11 9 14 14 C 1.53003 * 109.47361 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47384 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99905 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99939 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99907 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46866 * 90.00374 * 19 17 15 21 21 H 1.48502 * 109.47102 * 210.00052 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00623 * 19 17 15 23 23 C 1.34766 * 111.64801 * 0.02562 * 11 9 8 24 24 O 1.21229 * 127.15675 * 179.97438 * 23 11 9 25 25 H 1.08999 * 109.46727 * 299.99237 * 1 2 3 26 26 H 1.08998 * 109.47220 * 59.99783 * 1 2 3 27 27 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47041 * 240.00167 * 2 1 3 29 29 H 1.08999 * 109.47677 * 120.00487 * 2 1 3 30 30 H 1.08997 * 109.47311 * 179.97438 * 5 3 2 31 31 H 1.09003 * 109.47300 * 299.99716 * 5 3 2 32 32 H 1.09000 * 109.47673 * 59.99640 * 5 3 2 33 33 H 0.96993 * 126.68815 * 61.44267 * 8 6 3 34 34 H 1.08999 * 109.47098 * 209.97881 * 12 11 9 35 35 H 1.08999 * 109.46909 * 329.97717 * 12 11 9 36 36 H 1.08999 * 109.47354 * 300.00086 * 13 12 11 37 37 H 1.08999 * 109.47187 * 60.00248 * 13 12 11 38 38 H 1.09001 * 109.46301 * 300.00075 * 14 13 12 39 39 H 1.08999 * 109.46929 * 59.99893 * 14 13 12 40 40 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6352 2.1265 -1.3072 6 6 3.5649 1.4442 0.1257 7 1 4.0157 0.8666 -0.6814 8 7 3.9807 0.9157 1.4363 9 6 4.6438 1.9073 2.0583 10 8 5.1298 1.8031 3.1673 11 7 4.7138 3.0188 1.3169 12 6 5.3776 4.2529 1.7446 13 6 6.8454 4.2178 1.3146 14 6 7.5388 5.5063 1.7619 15 6 8.9845 5.4720 1.3378 16 1 9.3703 4.6166 0.8031 17 6 9.8147 6.5327 1.6323 18 7 11.0762 6.5030 1.2618 19 14 9.1472 8.0126 2.5564 20 1 9.3121 7.7998 4.0168 21 1 9.8926 9.2297 2.1463 22 1 7.7063 8.1846 2.2409 23 6 4.0984 2.8631 0.1281 24 8 3.9932 3.6866 -0.7554 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9982 3.1543 -1.3071 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 3.8101 0.0261 1.7830 34 1 4.8844 5.1090 1.2843 35 1 5.3187 4.3398 2.8295 36 1 7.3386 3.3617 1.7750 37 1 6.9043 4.1309 0.2297 38 1 7.0457 6.3626 1.3018 39 1 7.4800 5.5928 2.8468 40 1 11.6601 7.2494 1.4687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272334472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:37 Heat of formation + Delta-G solvation = -68.466833 kcal Electronic energy + Delta-G solvation = -20800.814083 eV Core-core repulsion = 17615.715547 eV Total energy + Delta-G solvation = -3185.098535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.47475 -38.63774 -37.45024 -35.86923 -34.99526 -33.26432 -31.50700 -30.45641 -27.79244 -26.97670 -24.74036 -23.51566 -22.62483 -20.68789 -20.48237 -20.03109 -18.08084 -17.14642 -16.79970 -16.39127 -15.55376 -15.43154 -15.34771 -14.57987 -14.32021 -14.15791 -14.05859 -13.92653 -13.43639 -12.91342 -12.76214 -12.37659 -12.18616 -12.08424 -11.81327 -11.72696 -11.35462 -11.19996 -11.08501 -10.83304 -10.80053 -10.24575 -9.99404 -9.90614 -9.76600 -9.61053 -9.32775 -9.13989 -8.51859 -6.02145 -4.00500 1.61548 2.26295 3.03459 3.06768 3.33658 3.40516 3.43834 3.84274 4.17825 4.36515 4.47361 4.59858 4.74629 4.99357 5.07803 5.13804 5.20294 5.27470 5.31865 5.54519 5.55008 5.57703 5.61362 5.64005 5.68328 5.73783 5.87458 5.90116 6.08511 6.39076 6.55887 6.66538 6.81578 7.10874 7.25527 7.39645 7.40966 7.79212 8.14134 8.55395 9.02182 9.59630 11.11376 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036557 B = 0.003847 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.751736 B = 7276.100246 C = 7558.250810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.080 0.920 5 C -0.158 4.158 6 C 0.095 3.905 7 H 0.125 0.875 8 N -0.728 5.728 9 C 0.701 3.299 10 O -0.538 6.538 11 N -0.572 5.572 12 C 0.113 3.887 13 C -0.116 4.116 14 C -0.009 4.009 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.523 3.477 24 O -0.461 6.461 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.436 0.564 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.887 -13.412 -3.210 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.099 0.901 5 C -0.216 4.216 6 C -0.014 4.014 7 H 0.143 0.857 8 N -0.393 5.393 9 C 0.401 3.599 10 O -0.411 6.411 11 N -0.317 5.317 12 C -0.007 4.007 13 C -0.154 4.154 14 C -0.047 4.047 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.310 3.690 24 O -0.330 6.330 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.281 0.719 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.452 -12.785 -3.062 26.018 hybrid contribution -0.149 0.340 0.622 0.724 sum -22.601 -12.445 -2.440 25.917 Atomic orbital electron populations 1.21803 0.95205 1.01827 1.02229 1.21562 0.96600 0.95008 1.02332 1.21355 0.90784 0.98089 1.00552 0.90111 1.21997 1.01763 1.02269 0.95556 1.22194 0.97604 0.93362 0.88258 0.85723 1.45551 1.59971 1.15728 1.18049 1.15931 0.79190 0.80622 0.84136 1.91025 1.50689 1.81635 1.17761 1.46573 1.51997 1.15318 1.17808 1.22089 0.94867 0.82090 1.01635 1.21822 0.91122 1.01421 1.01052 1.19502 0.96638 0.92396 0.96208 1.21078 0.92463 1.05125 1.37090 0.91071 1.25028 0.94699 0.98339 0.95441 1.69914 1.05002 1.32089 1.47259 0.86761 0.79608 0.82424 0.80406 1.20222 1.21377 1.18924 1.20744 0.77223 0.89409 0.81644 1.90783 1.55508 1.48562 1.38187 0.92664 0.92154 0.92562 0.91274 0.91850 0.90575 0.92014 0.91746 0.71933 0.89078 0.88909 0.91993 0.92229 0.96280 0.96632 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.67 37.16 0.36 -0.40 16 2 C -0.12 -0.60 5.36 -26.73 -0.14 -0.75 16 3 C -0.09 -0.63 2.20 -90.62 -0.20 -0.82 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.16 -1.18 8.61 37.15 0.32 -0.86 16 6 C 0.10 0.85 3.20 -68.20 -0.22 0.63 16 7 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 8 N -0.73 -6.99 5.95 -59.19 -0.35 -7.35 16 9 C 0.70 10.17 8.62 -88.02 -0.76 9.42 16 10 O -0.54 -9.83 17.48 5.34 0.09 -9.74 16 11 N -0.57 -8.56 2.60 -120.73 -0.31 -8.88 16 12 C 0.11 1.91 5.70 -4.04 -0.02 1.89 16 13 C -0.12 -2.39 5.48 -26.73 -0.15 -2.54 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 16 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.43 13.96 55.43 0.77 -27.65 16 19 Si 0.88 22.05 27.47 -169.99 -4.67 17.39 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 C 0.52 6.97 7.38 -10.55 -0.08 6.90 16 24 O -0.46 -7.19 15.63 5.60 0.09 -7.10 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 7.23 -51.93 -0.38 -0.08 16 30 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 33 H 0.44 3.02 8.29 -40.82 -0.34 2.68 16 34 H 0.09 1.46 8.00 -51.93 -0.42 1.04 16 35 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -34.37 325.87 -7.16 -41.54 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.26 Total: -2.55 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.43 Total: -0.57 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.11 Total: -43.88 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.37 -7.16 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272334472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.931 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds