Wall clock time and date at job start Mon Mar 30 2020 01:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47336 * 2 1 4 4 H 1.08997 * 109.46579 * 55.00233 * 3 2 1 5 5 C 1.52994 * 109.47125 * 295.00602 * 3 2 1 6 6 C 1.53002 * 109.47077 * 175.00153 * 3 2 1 7 7 H 1.09003 * 110.53204 * 57.17373 * 6 3 2 8 8 N 1.47312 * 110.73208 * 294.25019 * 6 3 2 9 9 C 1.34528 * 106.61878 * 241.41398 * 8 6 3 10 10 O 1.21533 * 123.76761 * 180.26708 * 9 8 6 11 11 N 1.33794 * 112.45680 * 359.97438 * 9 8 6 12 12 C 1.46503 * 124.17510 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47078 * 89.97638 * 12 11 9 14 14 C 1.53003 * 109.47361 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47384 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99905 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99939 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99907 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46866 * 90.00374 * 19 17 15 21 21 H 1.48502 * 109.47102 * 210.00052 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00623 * 19 17 15 23 23 C 1.34766 * 111.64801 * 0.02562 * 11 9 8 24 24 O 1.21229 * 127.15675 * 179.97438 * 23 11 9 25 25 H 1.08999 * 109.46727 * 299.99237 * 1 2 3 26 26 H 1.08998 * 109.47220 * 59.99783 * 1 2 3 27 27 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47041 * 240.00167 * 2 1 3 29 29 H 1.08999 * 109.47677 * 120.00487 * 2 1 3 30 30 H 1.08997 * 109.47311 * 179.97438 * 5 3 2 31 31 H 1.09003 * 109.47300 * 299.99716 * 5 3 2 32 32 H 1.09000 * 109.47673 * 59.99640 * 5 3 2 33 33 H 0.96993 * 126.68815 * 61.44267 * 8 6 3 34 34 H 1.08999 * 109.47098 * 209.97881 * 12 11 9 35 35 H 1.08999 * 109.46909 * 329.97717 * 12 11 9 36 36 H 1.08999 * 109.47354 * 300.00086 * 13 12 11 37 37 H 1.08999 * 109.47187 * 60.00248 * 13 12 11 38 38 H 1.09001 * 109.46301 * 300.00075 * 14 13 12 39 39 H 1.08999 * 109.46929 * 59.99893 * 14 13 12 40 40 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6352 2.1265 -1.3072 6 6 3.5649 1.4442 0.1257 7 1 4.0157 0.8666 -0.6814 8 7 3.9807 0.9157 1.4363 9 6 4.6438 1.9073 2.0583 10 8 5.1298 1.8031 3.1673 11 7 4.7138 3.0188 1.3169 12 6 5.3776 4.2529 1.7446 13 6 6.8454 4.2178 1.3146 14 6 7.5388 5.5063 1.7619 15 6 8.9845 5.4720 1.3378 16 1 9.3703 4.6166 0.8031 17 6 9.8147 6.5327 1.6323 18 7 11.0762 6.5030 1.2618 19 14 9.1472 8.0126 2.5564 20 1 9.3121 7.7998 4.0168 21 1 9.8926 9.2297 2.1463 22 1 7.7063 8.1846 2.2409 23 6 4.0984 2.8631 0.1281 24 8 3.9932 3.6866 -0.7554 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9982 3.1543 -1.3071 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 3.8101 0.0261 1.7830 34 1 4.8844 5.1090 1.2843 35 1 5.3187 4.3398 2.8295 36 1 7.3386 3.3617 1.7750 37 1 6.9043 4.1309 0.2297 38 1 7.0457 6.3626 1.3018 39 1 7.4800 5.5928 2.8468 40 1 11.6601 7.2494 1.4687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272334472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:36 Heat of formation + Delta-G solvation = -92.400050 kcal Electronic energy + Delta-G solvation = -20801.851905 eV Core-core repulsion = 17615.715547 eV Total energy + Delta-G solvation = -3186.136357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53642 -39.77341 -38.28529 -37.17026 -36.22326 -34.94063 -33.34321 -31.00869 -29.47794 -27.83400 -25.81185 -24.84254 -23.64677 -22.29575 -21.32877 -21.16294 -19.21580 -18.84440 -18.16914 -17.48795 -16.69721 -16.52691 -16.22665 -16.06086 -15.80609 -15.45598 -15.13073 -14.93071 -14.64820 -14.16350 -13.93126 -13.50133 -13.46787 -13.11820 -12.78170 -12.65756 -12.60462 -12.48275 -12.19827 -11.89413 -11.83578 -11.73560 -11.60469 -11.47637 -11.45159 -10.96951 -10.78454 -10.77382 -10.43151 -8.31313 -6.36738 0.55692 1.17681 1.36729 1.38870 1.50961 1.92179 2.15528 2.35902 2.90738 3.03949 3.50837 3.72153 3.90395 4.04295 4.06614 4.22612 4.26962 4.39904 4.41412 4.52410 4.64225 4.68817 4.77818 4.84913 4.88728 4.94144 5.07746 5.15138 5.23980 5.25310 5.36262 5.46156 5.47356 5.56310 5.61383 5.79966 6.04590 6.23774 6.36552 6.70147 7.08183 7.27673 8.85815 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036557 B = 0.003847 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.751736 B = 7276.100246 C = 7558.250810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.080 4.080 4 H 0.074 0.926 5 C -0.156 4.156 6 C 0.106 3.894 7 H 0.154 0.846 8 N -0.701 5.701 9 C 0.697 3.303 10 O -0.581 6.581 11 N -0.580 5.580 12 C 0.122 3.878 13 C -0.104 4.104 14 C -0.007 4.007 15 C -0.537 4.537 16 H 0.026 0.974 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.241 1.241 23 C 0.516 3.484 24 O -0.486 6.486 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.452 0.548 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.030 0.970 39 H 0.026 0.974 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.544 -13.861 -2.990 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.100 4.100 4 H 0.092 0.908 5 C -0.214 4.214 6 C -0.002 4.002 7 H 0.172 0.828 8 N -0.366 5.366 9 C 0.397 3.603 10 O -0.457 6.457 11 N -0.325 5.325 12 C 0.001 3.999 13 C -0.142 4.142 14 C -0.045 4.045 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.164 1.164 23 C 0.305 3.695 24 O -0.357 6.357 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.300 0.700 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.160 -13.295 -2.874 28.601 hybrid contribution 0.710 0.393 0.453 0.929 sum -24.450 -12.902 -2.421 27.751 Atomic orbital electron populations 1.21810 0.94977 1.02304 1.02064 1.21563 0.96729 0.93325 1.03466 1.21344 0.88840 0.99633 1.00182 0.90805 1.21972 1.02659 1.00761 0.96006 1.22371 0.99015 0.90474 0.88342 0.82844 1.45425 1.58148 1.15363 1.17694 1.16065 0.79335 0.81168 0.83694 1.90998 1.52744 1.82365 1.19622 1.46579 1.52141 1.15050 1.18751 1.21780 0.92409 0.83729 1.02008 1.21585 0.93604 0.99029 1.00001 1.19432 0.93786 0.94499 0.96734 1.21433 0.95363 1.03901 1.36797 0.95550 1.26088 0.94820 1.02087 0.96458 1.70075 1.06756 1.33539 1.48933 0.85589 0.80085 0.77575 0.79011 1.19042 1.20835 1.16379 1.21461 0.76530 0.90957 0.80551 1.90774 1.56305 1.49877 1.38732 0.93164 0.92054 0.91790 0.89957 0.90936 0.93208 0.91090 0.90414 0.70013 0.87881 0.88430 0.93771 0.93423 0.95182 0.95575 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 71.98 0.70 -0.38 16 2 C -0.11 -0.77 5.36 30.59 0.16 -0.60 16 3 C -0.08 -0.93 2.20 -10.80 -0.02 -0.95 16 4 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.16 -1.99 8.61 71.98 0.62 -1.37 16 6 C 0.11 1.63 3.20 44.37 0.14 1.78 16 7 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 8 N -0.70 -11.85 5.95 -459.59 -2.73 -14.58 16 9 C 0.70 19.51 8.62 179.44 1.55 21.06 16 10 O -0.58 -21.04 17.48 -3.82 -0.07 -21.11 16 11 N -0.58 -16.92 2.60 -773.13 -2.01 -18.93 16 12 C 0.12 4.04 5.70 86.38 0.49 4.53 16 13 C -0.10 -4.34 5.48 30.59 0.17 -4.17 16 14 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 15 C -0.54 -32.35 9.66 25.60 0.25 -32.10 16 16 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 17 C 0.00 0.12 5.47 84.65 0.46 0.59 16 18 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 19 Si 0.96 45.05 27.47 68.60 1.88 46.93 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 23 C 0.52 13.14 7.38 87.94 0.65 13.79 16 24 O -0.49 -14.84 15.63 -2.87 -0.04 -14.89 16 25 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.42 6.56 -2.39 -0.02 0.40 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.07 0.39 7.23 -2.39 -0.02 0.37 16 30 H 0.05 0.93 5.93 -2.39 -0.01 0.91 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.78 6.56 -2.39 -0.02 0.77 16 33 H 0.45 4.92 8.29 -92.71 -0.77 4.15 16 34 H 0.10 3.16 8.00 -2.39 -0.02 3.15 16 35 H 0.10 3.15 7.86 -2.39 -0.02 3.13 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 39 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 40 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -77.09 325.87 2.82 -74.27 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.21 Total: 7.54 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.28 Total: 1.97 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -4.45 Total: -94.72 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.11 Total: -36.00 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -77.09 2.82 -74.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272334472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.128 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds