Wall clock time and date at job start Mon Mar 30 2020 01:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.08997 * 109.47150 * 305.00233 * 3 2 1 5 5 C 1.53005 * 109.46911 * 65.00338 * 3 2 1 6 6 C 1.52999 * 109.47154 * 184.99713 * 3 2 1 7 7 H 1.09002 * 110.65604 * 57.09566 * 6 3 2 8 8 N 1.47312 * 110.60378 * 294.17373 * 6 3 2 9 9 C 1.34519 * 106.62088 * 241.25273 * 8 6 3 10 10 O 1.21538 * 123.77251 * 180.20862 * 9 8 6 11 11 N 1.33799 * 112.45907 * 0.37844 * 9 8 6 12 12 C 1.46497 * 124.17820 * 179.86262 * 11 9 8 13 13 C 1.53000 * 109.47302 * 269.70580 * 12 11 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.34767 * 111.63965 * 359.60101 * 11 9 8 24 24 O 1.21238 * 127.15287 * 180.18851 * 23 11 9 25 25 H 1.09003 * 109.47622 * 59.99759 * 1 2 3 26 26 H 1.09004 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47412 * 299.99384 * 1 2 3 28 28 H 1.08999 * 109.47034 * 239.99781 * 2 1 3 29 29 H 1.09004 * 109.46936 * 120.00544 * 2 1 3 30 30 H 1.09002 * 109.47284 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47004 * 299.99739 * 5 3 2 32 32 H 1.08997 * 109.47299 * 59.99986 * 5 3 2 33 33 H 0.97000 * 126.68284 * 61.51273 * 8 6 3 34 34 H 1.09000 * 109.47237 * 149.70591 * 12 11 9 35 35 H 1.09002 * 109.47081 * 29.70279 * 12 11 9 36 36 H 1.09000 * 109.46966 * 59.99845 * 13 12 11 37 37 H 1.09002 * 109.46807 * 299.99867 * 13 12 11 38 38 H 1.08998 * 109.46837 * 59.99832 * 14 13 12 39 39 H 1.09002 * 109.46926 * 299.99636 * 14 13 12 40 40 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4442 -0.1256 7 1 3.8770 0.9157 -1.0264 8 7 4.1840 0.8439 1.0686 9 6 4.9472 1.7999 1.6281 10 8 5.6054 1.6350 2.6364 11 7 4.8977 2.9539 0.9527 12 6 5.6275 4.1645 1.3373 13 6 4.7566 5.0111 2.2678 14 6 5.5185 6.2758 2.6689 15 6 4.6605 7.1099 3.5848 16 1 3.6705 6.7721 3.8536 17 6 5.1393 8.3045 4.0798 18 7 4.3884 9.0351 4.8748 19 14 6.8513 8.8892 3.6144 20 1 6.7743 9.7158 2.3831 21 1 7.4148 9.7021 4.7219 22 1 7.7256 7.7144 3.3680 23 6 4.0980 2.8631 -0.1283 24 8 3.8551 3.7353 -0.9346 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.9982 3.1543 1.3073 31 1 0.5490 2.1252 1.3970 32 1 2.0699 1.5874 2.1492 33 1 4.0675 -0.0650 1.3869 34 1 5.8720 4.7404 0.4447 35 1 6.5465 3.8863 1.8533 36 1 4.5121 4.4352 3.1603 37 1 3.8376 5.2893 1.7518 38 1 5.7626 6.8514 1.7761 39 1 6.4377 5.9979 3.1847 40 1 4.7254 9.8753 5.2232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272334477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:43 Heat of formation + Delta-G solvation = -67.981104 kcal Electronic energy + Delta-G solvation = -21097.230693 eV Core-core repulsion = 17912.153220 eV Total energy + Delta-G solvation = -3185.077473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52208 -38.54956 -37.49360 -35.80846 -34.88835 -33.23966 -31.50109 -30.18665 -27.87171 -27.25200 -24.68595 -23.53837 -22.64527 -20.54263 -20.32341 -20.00828 -17.97789 -17.12937 -16.71513 -16.41922 -15.72162 -15.43760 -14.98850 -14.73528 -14.33822 -14.16961 -14.04912 -13.93434 -13.59360 -12.82726 -12.54887 -12.40251 -12.22345 -11.95529 -11.77946 -11.54596 -11.32380 -11.16929 -11.00256 -10.84198 -10.79141 -10.22688 -10.04962 -9.95754 -9.75298 -9.58623 -9.32155 -9.13560 -8.51738 -6.02149 -4.00393 1.63198 2.27756 3.05931 3.10110 3.33477 3.40612 3.44224 3.86527 4.20711 4.42575 4.47471 4.60789 4.79935 5.08411 5.11490 5.18472 5.27733 5.31865 5.32763 5.56140 5.60295 5.62741 5.65299 5.69255 5.71728 5.78396 5.88003 5.98732 6.12569 6.39397 6.56109 6.68125 6.81692 7.12135 7.25705 7.39911 7.41688 7.79297 8.15829 8.55355 9.02150 9.59713 11.11324 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.004376 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.023168 B = 6396.926028 C = 6716.807436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.096 0.904 5 C -0.157 4.157 6 C 0.096 3.904 7 H 0.124 0.876 8 N -0.726 5.726 9 C 0.702 3.298 10 O -0.539 6.539 11 N -0.571 5.571 12 C 0.112 3.888 13 C -0.115 4.115 14 C -0.010 4.010 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.524 3.476 24 O -0.466 6.466 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.436 0.564 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -20.661 -12.696 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.114 0.886 5 C -0.214 4.214 6 C -0.013 4.013 7 H 0.141 0.859 8 N -0.391 5.391 9 C 0.402 3.598 10 O -0.412 6.412 11 N -0.317 5.317 12 C -0.007 4.007 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.311 3.689 24 O -0.335 6.335 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.280 0.720 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.948 -19.978 -12.473 23.881 hybrid contribution 0.776 0.062 -0.012 0.778 sum -3.172 -19.916 -12.485 23.719 Atomic orbital electron populations 1.21810 0.95150 1.01779 1.02407 1.21543 0.96695 0.94963 1.02199 1.21412 0.90664 0.98079 1.00781 0.88599 1.21948 1.02327 1.00794 0.96309 1.22194 0.95845 0.92266 0.91004 0.85866 1.45515 1.49905 1.14731 1.28961 1.15906 0.80426 0.80591 0.82838 1.91026 1.45011 1.81510 1.23670 1.46559 1.45072 1.13759 1.26273 1.22088 0.95774 0.82082 1.00788 1.21813 0.98635 0.97131 0.97731 1.19503 0.96356 0.92362 0.96548 1.21073 1.02615 1.04267 1.27769 0.91076 1.25027 0.97429 0.96406 0.94622 1.69918 1.37030 1.13834 1.33458 0.86765 0.85203 0.79077 0.78199 1.20250 1.21369 1.18905 1.20763 0.77960 0.89753 0.80469 1.90812 1.57751 1.44961 1.39975 0.92470 0.92626 0.92152 0.91544 0.91692 0.92308 0.91345 0.91992 0.71958 0.89128 0.88893 0.91985 0.92302 0.96735 0.96203 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.15 0.36 -0.53 16 2 C -0.12 -0.65 5.25 -26.74 -0.14 -0.79 16 3 C -0.09 -0.71 2.32 -90.62 -0.21 -0.92 16 4 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.16 -1.59 8.42 37.16 0.31 -1.28 16 6 C 0.10 0.84 3.44 -68.20 -0.23 0.61 16 7 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 8 N -0.73 -6.81 5.06 -59.19 -0.30 -7.11 16 9 C 0.70 10.04 8.53 -88.02 -0.75 9.29 16 10 O -0.54 -9.76 17.48 5.33 0.09 -9.67 16 11 N -0.57 -8.50 2.60 -120.73 -0.31 -8.81 16 12 C 0.11 1.90 5.70 -4.04 -0.02 1.88 16 13 C -0.11 -2.36 5.48 -26.73 -0.15 -2.51 16 14 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 15 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 19 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 C 0.52 7.02 6.47 -10.56 -0.07 6.95 16 24 O -0.47 -7.51 17.76 5.59 0.10 -7.41 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 7.61 -51.93 -0.40 -0.05 16 30 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 31 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 32 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 33 H 0.44 2.94 8.54 -40.82 -0.35 2.59 16 34 H 0.09 1.45 8.00 -51.93 -0.42 1.03 16 35 H 0.09 1.55 7.85 -51.93 -0.41 1.14 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -34.50 327.51 -7.15 -41.65 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.33 Total: -2.13 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.44 Total: -1.26 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.16 Total: -43.49 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.19 Total: -17.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.50 -7.15 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272334477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.328 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds