Wall clock time and date at job start Mon Mar 30 2020 01:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.08997 * 109.47150 * 305.00233 * 3 2 1 5 5 C 1.53005 * 109.46911 * 65.00338 * 3 2 1 6 6 C 1.52999 * 109.47154 * 184.99713 * 3 2 1 7 7 H 1.09002 * 110.65604 * 57.09566 * 6 3 2 8 8 N 1.47312 * 110.60378 * 294.17373 * 6 3 2 9 9 C 1.34519 * 106.62088 * 241.25273 * 8 6 3 10 10 O 1.21538 * 123.77251 * 180.20862 * 9 8 6 11 11 N 1.33799 * 112.45907 * 0.37844 * 9 8 6 12 12 C 1.46497 * 124.17820 * 179.86262 * 11 9 8 13 13 C 1.53000 * 109.47302 * 269.70580 * 12 11 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.34767 * 111.63965 * 359.60101 * 11 9 8 24 24 O 1.21238 * 127.15287 * 180.18851 * 23 11 9 25 25 H 1.09003 * 109.47622 * 59.99759 * 1 2 3 26 26 H 1.09004 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47412 * 299.99384 * 1 2 3 28 28 H 1.08999 * 109.47034 * 239.99781 * 2 1 3 29 29 H 1.09004 * 109.46936 * 120.00544 * 2 1 3 30 30 H 1.09002 * 109.47284 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47004 * 299.99739 * 5 3 2 32 32 H 1.08997 * 109.47299 * 59.99986 * 5 3 2 33 33 H 0.97000 * 126.68284 * 61.51273 * 8 6 3 34 34 H 1.09000 * 109.47237 * 149.70591 * 12 11 9 35 35 H 1.09002 * 109.47081 * 29.70279 * 12 11 9 36 36 H 1.09000 * 109.46966 * 59.99845 * 13 12 11 37 37 H 1.09002 * 109.46807 * 299.99867 * 13 12 11 38 38 H 1.08998 * 109.46837 * 59.99832 * 14 13 12 39 39 H 1.09002 * 109.46926 * 299.99636 * 14 13 12 40 40 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4442 -0.1256 7 1 3.8770 0.9157 -1.0264 8 7 4.1840 0.8439 1.0686 9 6 4.9472 1.7999 1.6281 10 8 5.6054 1.6350 2.6364 11 7 4.8977 2.9539 0.9527 12 6 5.6275 4.1645 1.3373 13 6 4.7566 5.0111 2.2678 14 6 5.5185 6.2758 2.6689 15 6 4.6605 7.1099 3.5848 16 1 3.6705 6.7721 3.8536 17 6 5.1393 8.3045 4.0798 18 7 4.3884 9.0351 4.8748 19 14 6.8513 8.8892 3.6144 20 1 6.7743 9.7158 2.3831 21 1 7.4148 9.7021 4.7219 22 1 7.7256 7.7144 3.3680 23 6 4.0980 2.8631 -0.1283 24 8 3.8551 3.7353 -0.9346 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.9982 3.1543 1.3073 31 1 0.5490 2.1252 1.3970 32 1 2.0699 1.5874 2.1492 33 1 4.0675 -0.0650 1.3869 34 1 5.8720 4.7404 0.4447 35 1 6.5465 3.8863 1.8533 36 1 4.5121 4.4352 3.1603 37 1 3.8376 5.2893 1.7518 38 1 5.7626 6.8514 1.7761 39 1 6.4377 5.9979 3.1847 40 1 4.7254 9.8753 5.2232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272334477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:43 Heat of formation + Delta-G solvation = -92.000142 kcal Electronic energy + Delta-G solvation = -21098.272236 eV Core-core repulsion = 17912.153220 eV Total energy + Delta-G solvation = -3186.119016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.57992 -39.70739 -38.38033 -37.14497 -36.13612 -34.89769 -33.32705 -30.83682 -29.50101 -28.25636 -25.82928 -24.91290 -23.63267 -22.30156 -21.34980 -20.92896 -19.15180 -18.81905 -18.07249 -17.57238 -16.70837 -16.60111 -16.14691 -15.85606 -15.76417 -15.61654 -15.28371 -14.94125 -14.80365 -14.28873 -14.09011 -13.49584 -13.21290 -13.11962 -12.97252 -12.64061 -12.61154 -12.36160 -12.31910 -11.91260 -11.83967 -11.64403 -11.63048 -11.48780 -11.46206 -11.10834 -10.78613 -10.78519 -10.39592 -8.31552 -6.36957 0.57079 1.19266 1.36202 1.38690 1.50867 1.95476 2.20003 2.35684 2.92634 3.03659 3.47570 3.73682 3.89600 3.97350 4.04275 4.26887 4.28872 4.39849 4.41425 4.50540 4.57115 4.68549 4.68802 4.76721 4.89047 4.92902 5.01130 5.10381 5.11557 5.25191 5.35482 5.40913 5.46142 5.53234 5.60987 5.82636 6.06529 6.23394 6.36883 6.69680 7.10974 7.27376 8.85534 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.004376 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.023168 B = 6396.926028 C = 6716.807436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.083 4.083 4 H 0.100 0.900 5 C -0.157 4.157 6 C 0.109 3.891 7 H 0.170 0.830 8 N -0.698 5.698 9 C 0.698 3.302 10 O -0.582 6.582 11 N -0.580 5.580 12 C 0.121 3.879 13 C -0.102 4.102 14 C -0.007 4.007 15 C -0.537 4.537 16 H 0.025 0.975 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.242 1.242 23 C 0.518 3.482 24 O -0.496 6.496 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.453 0.547 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -22.754 -14.886 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.103 4.103 4 H 0.118 0.882 5 C -0.214 4.214 6 C 0.001 3.999 7 H 0.187 0.813 8 N -0.364 5.364 9 C 0.399 3.601 10 O -0.459 6.459 11 N -0.324 5.324 12 C 0.000 4.000 13 C -0.140 4.140 14 C -0.044 4.044 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.777 3.223 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.165 1.165 23 C 0.307 3.693 24 O -0.368 6.368 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.300 0.700 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.827 -22.140 -14.693 26.722 hybrid contribution 0.242 0.709 0.706 1.030 sum -2.584 -21.431 -13.986 25.721 Atomic orbital electron populations 1.21828 0.95360 1.02306 1.01909 1.21534 0.96434 0.92945 1.03798 1.21429 0.89743 0.99801 0.99295 0.88212 1.21952 1.02907 0.98792 0.97790 1.22401 0.96083 0.89289 0.92098 0.81276 1.45384 1.48025 1.14536 1.28433 1.16031 0.80648 0.81038 0.82376 1.90998 1.47108 1.82202 1.25555 1.46558 1.45429 1.13420 1.27034 1.21779 0.95083 0.82774 1.00389 1.21563 0.98444 0.96263 0.97750 1.19432 0.95940 0.93168 0.95910 1.21421 1.01696 1.05421 1.28966 0.95629 1.26083 1.02595 0.96392 0.94314 1.70079 1.39612 1.14580 1.34961 0.85589 0.79107 0.79276 0.78304 1.18842 1.20852 1.16543 1.21529 0.77076 0.91398 0.79331 1.90794 1.58564 1.46495 1.40903 0.92413 0.91598 0.93300 0.89037 0.90969 0.95932 0.90445 0.92514 0.69975 0.87874 0.88394 0.93890 0.93688 0.95354 0.95421 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.67 71.98 0.70 -0.69 16 2 C -0.11 -0.81 5.25 30.59 0.16 -0.65 16 3 C -0.08 -1.10 2.32 -10.79 -0.03 -1.13 16 4 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.16 -3.14 8.42 71.98 0.61 -2.53 16 6 C 0.11 1.59 3.44 44.37 0.15 1.74 16 7 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 8 N -0.70 -11.31 5.06 -459.61 -2.32 -13.63 16 9 C 0.70 19.28 8.53 179.44 1.53 20.81 16 10 O -0.58 -20.94 17.48 -3.83 -0.07 -21.00 16 11 N -0.58 -16.85 2.60 -773.12 -2.01 -18.86 16 12 C 0.12 4.03 5.70 86.38 0.49 4.53 16 13 C -0.10 -4.30 5.48 30.59 0.17 -4.13 16 14 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 15 C -0.54 -32.47 9.66 25.60 0.25 -32.22 16 16 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 17 C 0.00 0.17 5.47 84.66 0.46 0.63 16 18 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 19 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 23 C 0.52 13.19 6.47 87.94 0.57 13.76 16 24 O -0.50 -15.62 17.76 -2.90 -0.05 -15.67 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 0.54 6.57 -2.38 -0.02 0.53 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.47 7.61 -2.39 -0.02 0.45 16 30 H 0.02 0.60 7.28 -2.39 -0.02 0.58 16 31 H 0.08 1.37 6.57 -2.39 -0.02 1.36 16 32 H 0.06 1.17 7.51 -2.39 -0.02 1.15 16 33 H 0.45 4.60 8.54 -92.71 -0.79 3.80 16 34 H 0.10 3.18 8.00 -2.39 -0.02 3.16 16 35 H 0.10 3.18 7.85 -2.39 -0.02 3.16 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 39 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 40 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -78.68 327.51 3.09 -75.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.19 Total: 7.86 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.18 Total: -0.09 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -4.04 Total: -93.69 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.12 Total: -36.67 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -78.68 3.09 -75.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272334477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.416 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds