Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 O 1.21283 * 119.99876 * 120.00091 * 5 3 2 7 7 N 1.34776 * 119.99921 * 300.00312 * 5 3 2 8 8 C 1.46495 * 119.99697 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47123 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99985 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99697 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46967 * 59.99717 * 14 12 10 16 16 H 1.48490 * 109.47056 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47153 * 300.00180 * 14 12 10 18 18 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 19 19 C 1.46767 * 124.34884 * 120.00064 * 18 3 2 20 20 C 1.54482 * 105.47346 * 197.01620 * 19 18 3 21 21 C 1.54636 * 101.76092 * 334.58117 * 20 19 18 22 22 C 1.34414 * 124.35184 * 299.69622 * 18 3 2 23 23 O 1.21283 * 124.93949 * 359.56634 * 22 18 3 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96993 * 119.99863 * 359.97438 * 7 5 3 30 30 H 1.08997 * 109.47668 * 299.99971 * 8 7 5 31 31 H 1.09001 * 109.47461 * 60.00362 * 8 7 5 32 32 H 1.09006 * 109.46782 * 299.99541 * 9 8 7 33 33 H 1.09001 * 109.46897 * 59.99722 * 9 8 7 34 34 H 0.97005 * 119.99685 * 180.02562 * 13 12 10 35 35 H 1.09004 * 110.24004 * 316.01087 * 19 18 3 36 36 H 1.08995 * 110.25240 * 78.01185 * 19 18 3 37 37 H 1.08998 * 110.97007 * 92.69444 * 20 19 18 38 38 H 1.08995 * 110.97161 * 216.46246 * 20 19 18 39 39 H 1.09001 * 110.48467 * 143.47588 * 21 20 19 40 40 H 1.08995 * 110.48206 * 265.98693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2031 8 6 5.5898 0.8925 1.3232 9 6 5.9947 0.2079 2.6303 10 6 7.4966 0.2098 2.7542 11 1 8.1019 0.6544 1.9780 12 6 8.0980 -0.3570 3.8578 13 7 7.3609 -0.8988 4.8027 14 14 9.9597 -0.3552 4.0110 15 1 10.4550 1.0448 4.0118 16 1 10.3526 -1.0195 5.2796 17 1 10.5515 -1.0889 2.8635 18 7 1.6524 2.0975 -1.2518 19 6 0.8076 3.2949 -1.3328 20 6 0.3193 3.3565 -2.7971 21 6 1.4367 2.5828 -3.5348 22 6 2.0296 1.6825 -2.4734 23 8 2.7399 0.7243 -2.6928 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.5861 0.4921 1.9003 30 1 6.0242 0.3532 0.4814 31 1 5.9535 1.9200 1.3230 32 1 5.5604 0.7469 3.4724 33 1 5.6310 -0.8197 2.6301 34 1 7.7841 -1.2972 5.5793 35 1 -0.0417 3.2037 -0.6555 36 1 1.3896 4.1843 -1.0915 37 1 -0.6419 2.8549 -2.9092 38 1 0.2627 4.3874 -3.1464 39 1 1.0177 1.9921 -4.3494 40 1 2.1916 3.2718 -3.9133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273085908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = -84.387131 kcal Electronic energy + Delta-G solvation = -20877.926012 eV Core-core repulsion = 17692.137121 eV Total energy + Delta-G solvation = -3185.788891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77376 -38.78359 -36.32015 -34.91274 -34.79991 -32.78723 -31.13439 -29.76515 -27.68738 -27.15421 -24.53223 -22.38849 -22.05085 -21.22515 -20.51567 -18.86438 -17.32529 -16.91460 -16.37663 -15.96783 -15.47678 -14.86912 -14.67922 -14.47389 -14.34293 -13.73501 -13.61393 -13.31852 -13.20849 -13.04858 -12.72666 -12.46277 -12.26356 -11.96426 -11.73714 -11.35305 -11.26510 -11.17870 -11.05280 -10.98772 -10.64150 -10.28734 -9.80257 -9.56022 -9.49829 -9.26198 -8.59488 -8.50352 -8.31441 -6.07621 -4.10237 2.69753 2.85763 3.02618 3.32859 3.36268 3.39874 3.76282 4.25739 4.28966 4.43653 4.58447 4.77336 4.82538 4.90793 5.01952 5.15951 5.24451 5.29376 5.33964 5.42575 5.45940 5.56687 5.62743 5.75438 5.81440 5.94720 6.13786 6.34582 6.38959 6.51196 6.77671 6.95952 7.15862 7.53550 7.64091 7.90632 8.03164 8.28545 8.32978 8.70445 8.95443 9.54386 11.03979 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034820 B = 0.003719 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.948224 B = 7527.640822 C = 7899.082696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.143 3.857 4 H 0.110 0.890 5 C 0.495 3.505 6 O -0.530 6.530 7 N -0.721 5.721 8 C 0.124 3.876 9 C 0.014 3.986 10 C -0.522 4.522 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.606 5.606 19 C 0.104 3.896 20 C -0.129 4.129 21 C -0.155 4.155 22 C 0.524 3.476 23 O -0.514 6.514 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.396 0.604 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 7.594 -10.486 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.036 3.964 4 H 0.128 0.872 5 C 0.278 3.722 6 O -0.407 6.407 7 N -0.372 5.372 8 C 0.002 3.998 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.341 5.341 19 C -0.019 4.019 20 C -0.167 4.167 21 C -0.195 4.195 22 C 0.312 3.688 23 O -0.388 6.388 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.846 7.316 -11.006 23.018 hybrid contribution 0.814 -0.121 0.666 1.058 sum -18.033 7.195 -10.340 21.997 Atomic orbital electron populations 1.21704 0.94834 1.01953 1.01643 1.21899 0.96780 0.94338 1.04570 1.20896 0.92974 0.95440 0.87099 0.87188 1.20707 0.89982 0.79047 0.82434 1.90684 1.65015 1.45262 1.39694 1.46260 1.09685 1.59177 1.22057 1.21702 0.76375 1.00785 1.00985 1.19316 0.97005 0.95817 0.90242 1.21025 0.91251 1.38148 1.05625 0.92337 1.24988 0.98529 0.95080 0.95644 1.69946 1.35403 1.38410 1.09609 0.86569 0.85247 0.78364 0.77348 1.20125 1.21232 1.20087 1.47895 1.51560 1.29210 1.05392 1.22084 0.94146 0.87848 0.97827 1.22562 0.98420 1.01785 0.93953 1.22313 0.99396 0.99605 0.98188 1.20682 0.79507 0.84607 0.84007 1.90727 1.36115 1.28465 1.83503 0.92622 0.92316 0.92772 0.90020 0.89746 0.77044 0.92612 0.92728 0.95977 0.95916 0.92810 0.90380 0.91143 0.90062 0.89271 0.88346 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.80 37.16 0.36 -0.92 16 2 C -0.14 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C 0.14 1.85 2.67 -69.08 -0.18 1.67 16 4 H 0.11 1.09 8.07 -51.93 -0.42 0.67 16 5 C 0.50 8.96 6.85 -10.99 -0.08 8.88 16 6 O -0.53 -11.89 14.84 -10.08 -0.15 -12.04 16 7 N -0.72 -13.10 5.42 -60.29 -0.33 -13.43 16 8 C 0.12 2.76 5.61 -4.04 -0.02 2.74 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 11 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 14 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 N -0.61 -7.45 2.08 -166.16 -0.35 -7.80 16 19 C 0.10 0.81 7.30 -3.12 -0.02 0.79 16 20 C -0.13 -0.78 7.18 -25.09 -0.18 -0.96 16 21 C -0.15 -1.46 6.86 -26.74 -0.18 -1.64 16 22 C 0.52 7.70 6.69 -10.86 -0.07 7.62 16 23 O -0.51 -10.10 15.33 -10.08 -0.15 -10.25 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 27 H 0.08 0.91 7.43 -51.93 -0.39 0.53 16 28 H 0.08 1.27 6.67 -51.93 -0.35 0.93 16 29 H 0.40 6.09 7.83 -40.82 -0.32 5.77 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -36.09 331.23 -7.83 -43.92 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.49 Total: 0.48 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.07 Total: 3.08 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.06 Total: -46.88 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.30 Total: -22.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.09 -7.83 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273085908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.465 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds