Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 O 1.21283 * 119.99876 * 120.00091 * 5 3 2 7 7 N 1.34776 * 119.99921 * 300.00312 * 5 3 2 8 8 C 1.46495 * 119.99697 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47123 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99985 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99697 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46967 * 59.99717 * 14 12 10 16 16 H 1.48490 * 109.47056 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47153 * 300.00180 * 14 12 10 18 18 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 19 19 C 1.46767 * 124.34884 * 120.00064 * 18 3 2 20 20 C 1.54482 * 105.47346 * 197.01620 * 19 18 3 21 21 C 1.54636 * 101.76092 * 334.58117 * 20 19 18 22 22 C 1.34414 * 124.35184 * 299.69622 * 18 3 2 23 23 O 1.21283 * 124.93949 * 359.56634 * 22 18 3 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96993 * 119.99863 * 359.97438 * 7 5 3 30 30 H 1.08997 * 109.47668 * 299.99971 * 8 7 5 31 31 H 1.09001 * 109.47461 * 60.00362 * 8 7 5 32 32 H 1.09006 * 109.46782 * 299.99541 * 9 8 7 33 33 H 1.09001 * 109.46897 * 59.99722 * 9 8 7 34 34 H 0.97005 * 119.99685 * 180.02562 * 13 12 10 35 35 H 1.09004 * 110.24004 * 316.01087 * 19 18 3 36 36 H 1.08995 * 110.25240 * 78.01185 * 19 18 3 37 37 H 1.08998 * 110.97007 * 92.69444 * 20 19 18 38 38 H 1.08995 * 110.97161 * 216.46246 * 20 19 18 39 39 H 1.09001 * 110.48467 * 143.47588 * 21 20 19 40 40 H 1.08995 * 110.48206 * 265.98693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2031 8 6 5.5898 0.8925 1.3232 9 6 5.9947 0.2079 2.6303 10 6 7.4966 0.2098 2.7542 11 1 8.1019 0.6544 1.9780 12 6 8.0980 -0.3570 3.8578 13 7 7.3609 -0.8988 4.8027 14 14 9.9597 -0.3552 4.0110 15 1 10.4550 1.0448 4.0118 16 1 10.3526 -1.0195 5.2796 17 1 10.5515 -1.0889 2.8635 18 7 1.6524 2.0975 -1.2518 19 6 0.8076 3.2949 -1.3328 20 6 0.3193 3.3565 -2.7971 21 6 1.4367 2.5828 -3.5348 22 6 2.0296 1.6825 -2.4734 23 8 2.7399 0.7243 -2.6928 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.5861 0.4921 1.9003 30 1 6.0242 0.3532 0.4814 31 1 5.9535 1.9200 1.3230 32 1 5.5604 0.7469 3.4724 33 1 5.6310 -0.8197 2.6301 34 1 7.7841 -1.2972 5.5793 35 1 -0.0417 3.2037 -0.6555 36 1 1.3896 4.1843 -1.0915 37 1 -0.6419 2.8549 -2.9092 38 1 0.2627 4.3874 -3.1464 39 1 1.0177 1.9921 -4.3494 40 1 2.1916 3.2718 -3.9133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273085908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = -109.223317 kcal Electronic energy + Delta-G solvation = -20879.002990 eV Core-core repulsion = 17692.137121 eV Total energy + Delta-G solvation = -3186.865869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84976 -40.16926 -37.41691 -36.62571 -35.87530 -34.79465 -31.94943 -31.63558 -28.51620 -28.29801 -26.41484 -23.35688 -23.06945 -22.67905 -21.99028 -20.04406 -18.68493 -18.36434 -17.87470 -17.01411 -16.67816 -16.50252 -16.29166 -16.12364 -15.26595 -15.01534 -14.87385 -14.52466 -14.35351 -14.24665 -13.78376 -13.64516 -13.33432 -13.26045 -13.02251 -12.91702 -12.57067 -12.41062 -12.27219 -12.12367 -12.00125 -11.77663 -11.70232 -11.50770 -10.93166 -10.65529 -10.62536 -10.06727 -9.65779 -8.26585 -6.37374 1.39335 1.41951 1.49869 1.57009 1.62228 1.92594 2.32904 2.47427 3.07751 3.44826 3.65689 3.74873 3.84405 3.96098 4.09423 4.23853 4.37043 4.41542 4.43221 4.51766 4.71256 4.71627 4.78462 4.79205 4.88449 5.05311 5.12156 5.14554 5.24364 5.26578 5.34833 5.44690 5.54088 5.58593 5.75206 6.13324 6.21450 6.56945 6.74583 7.20161 7.31176 7.31770 8.85006 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034820 B = 0.003719 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.948224 B = 7527.640822 C = 7899.082696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 C 0.148 3.852 4 H 0.153 0.847 5 C 0.488 3.512 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.144 3.856 9 C 0.026 3.974 10 C -0.552 4.552 11 H 0.055 0.945 12 C 0.010 3.990 13 N -0.924 5.924 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.271 1.271 18 N -0.605 5.605 19 C 0.094 3.906 20 C -0.112 4.112 21 C -0.152 4.152 22 C 0.503 3.497 23 O -0.580 6.580 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.411 0.589 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.267 0.733 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.828 8.973 -10.073 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 C 0.041 3.959 4 H 0.171 0.829 5 C 0.274 3.726 6 O -0.458 6.458 7 N -0.367 5.367 8 C 0.020 3.980 9 C -0.011 4.011 10 C -0.590 4.590 11 H 0.073 0.927 12 C -0.189 4.189 13 N -0.563 5.563 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.339 5.339 19 C -0.027 4.027 20 C -0.150 4.150 21 C -0.192 4.192 22 C 0.293 3.707 23 O -0.460 6.460 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.248 0.752 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.960 8.729 -10.569 25.044 hybrid contribution 1.436 -0.545 0.537 1.627 sum -19.524 8.184 -10.032 23.426 Atomic orbital electron populations 1.21653 0.91778 1.02733 1.03019 1.21867 0.99293 0.93166 1.02890 1.20995 0.88772 0.97018 0.89156 0.82942 1.21770 0.92417 0.77351 0.81019 1.90657 1.66733 1.47233 1.41130 1.46070 1.08034 1.59500 1.23048 1.21163 0.79048 0.99330 0.98479 1.19110 0.95831 0.94976 0.91225 1.21426 0.92853 1.38738 1.06005 0.92714 1.25849 1.03557 0.94398 0.95130 1.70040 1.37435 1.38772 1.10077 0.85506 0.79184 0.78770 0.77644 1.19249 1.20209 1.19634 1.48153 1.51205 1.30085 1.04412 1.22484 0.94474 0.85766 0.99975 1.22620 0.97621 1.02959 0.91791 1.22364 1.00481 0.99066 0.97311 1.21708 0.78747 0.84302 0.85948 1.90680 1.39108 1.31445 1.84735 0.89988 0.91958 0.92487 0.89596 0.93646 0.75240 0.94880 0.93641 0.96745 0.97408 0.92409 0.86978 0.91092 0.87977 0.86600 0.87290 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.80 71.98 0.71 -1.31 16 2 C -0.13 -3.09 5.31 30.59 0.16 -2.93 16 3 C 0.15 3.63 2.67 44.24 0.12 3.75 16 4 H 0.15 2.45 8.07 -2.38 -0.02 2.43 16 5 C 0.49 17.95 6.85 87.66 0.60 18.56 16 6 O -0.58 -26.95 14.84 11.91 0.18 -26.77 16 7 N -0.71 -26.47 5.42 -463.06 -2.51 -28.98 16 8 C 0.14 6.66 5.61 86.38 0.48 7.14 16 9 C 0.03 1.36 5.09 29.85 0.15 1.51 16 10 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 11 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 12 C 0.01 0.56 5.46 84.66 0.46 1.02 16 13 N -0.92 -54.73 13.29 21.45 0.28 -54.45 16 14 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 N -0.61 -14.02 2.08 -798.19 -1.66 -15.68 16 19 C 0.09 1.13 7.30 86.83 0.63 1.77 16 20 C -0.11 -0.92 7.18 31.66 0.23 -0.70 16 21 C -0.15 -2.67 6.86 30.59 0.21 -2.46 16 22 C 0.50 14.89 6.69 87.90 0.59 15.48 16 23 O -0.58 -24.18 15.33 11.91 0.18 -24.00 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.83 7.75 -2.38 -0.02 0.82 16 27 H 0.09 1.86 7.43 -2.39 -0.02 1.84 16 28 H 0.04 1.43 6.67 -2.39 -0.02 1.41 16 29 H 0.41 12.60 7.83 -92.71 -0.73 11.87 16 30 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 35 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -82.97 331.23 3.38 -79.59 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.30 Total: 13.56 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.58 Total: 10.16 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -3.88 Total: -99.11 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: 0.36 Total: -50.77 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -82.97 3.38 -79.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273085908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.631 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds