Wall clock time and date at job start Mon Mar 30 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09007 * 109.87464 * 318.98284 * 16 14 13 18 18 C 1.54326 * 109.88342 * 79.99688 * 16 14 13 19 19 C 1.55163 * 102.94307 * 141.61046 * 18 16 14 20 20 C 1.54910 * 101.58071 * 324.50196 * 19 18 16 21 21 N 1.47021 * 109.88482 * 197.80876 * 16 14 13 22 22 C 1.34780 * 125.65180 * 61.61847 * 21 16 14 23 23 C 1.50702 * 120.00282 * 180.02562 * 22 21 16 24 24 O 1.21282 * 119.99594 * 0.02562 * 22 21 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08998 * 110.72289 * 259.97405 * 18 16 14 33 33 H 1.09002 * 110.71942 * 23.07555 * 18 16 14 34 34 H 1.08997 * 111.00034 * 82.57274 * 19 18 16 35 35 H 1.08996 * 111.00224 * 206.42806 * 19 18 16 36 36 H 1.08995 * 110.37095 * 155.84676 * 20 19 18 37 37 H 1.09002 * 110.36593 * 278.05973 * 20 19 18 38 38 H 1.09001 * 109.46302 * 89.99871 * 23 22 21 39 39 H 1.08991 * 109.47099 * 209.99892 * 23 22 21 40 40 H 1.09001 * 109.46916 * 330.00640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.8767 3.9106 -3.0486 18 6 -0.4078 2.2801 -3.6856 19 6 -1.6015 2.9689 -4.3983 20 6 -2.2473 3.7574 -3.2317 21 7 -1.1107 4.2275 -2.4190 22 6 -1.1217 5.2949 -1.5963 23 6 -2.3737 6.1209 -1.4502 24 8 -0.1240 5.5907 -0.9734 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.3946 2.0700 -4.3928 33 1 -0.7288 1.3660 -3.1860 34 1 -1.2530 3.6437 -5.1802 35 1 -2.2944 2.2306 -4.8017 36 1 -2.8156 4.6047 -3.6152 37 1 -2.8920 3.1043 -2.6435 38 1 -2.9814 5.7191 -0.6395 39 1 -2.1041 7.1527 -1.2252 40 1 -2.9411 6.0881 -2.3803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273817928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:26 Heat of formation + Delta-G solvation = -75.818489 kcal Electronic energy + Delta-G solvation = -21684.495535 eV Core-core repulsion = 18499.078208 eV Total energy + Delta-G solvation = -3185.417327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33351 -38.35908 -36.98804 -34.86568 -32.43716 -31.90005 -31.01014 -29.84074 -28.68444 -26.77082 -23.95737 -22.90618 -21.66888 -20.66909 -19.35911 -18.86183 -17.34363 -17.00216 -16.23891 -15.41894 -15.22849 -14.80291 -14.50283 -14.27519 -13.96067 -13.49390 -13.06701 -12.87134 -12.73059 -12.55720 -12.38410 -12.18989 -11.92431 -11.52670 -11.34030 -11.32127 -11.19368 -10.92637 -10.90670 -10.78372 -10.26297 -10.13094 -9.65639 -9.58629 -9.17230 -8.98237 -8.45823 -8.31230 -7.71967 -6.06191 -4.14898 2.81579 3.05870 3.29128 3.35434 3.37225 3.50166 4.17824 4.37789 4.47301 4.48673 4.76264 4.94841 5.14482 5.21779 5.24807 5.31096 5.37096 5.46992 5.60768 5.65538 5.74238 5.80950 5.83030 6.05555 6.32917 6.40722 6.47873 6.68764 7.05978 7.24464 7.41883 7.54982 7.63424 7.68477 7.80061 7.98545 8.24274 8.38706 8.76613 8.85796 9.24535 9.52399 10.99352 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.005330 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.186910 B = 5251.988419 C = 5563.308597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.538 6.538 16 C 0.114 3.886 17 H 0.090 0.910 18 C -0.120 4.120 19 C -0.131 4.131 20 C 0.101 3.899 21 N -0.601 5.601 22 C 0.528 3.472 23 C -0.165 4.165 24 O -0.531 6.531 25 H 0.048 0.952 26 H 0.021 0.979 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 4.903 -14.592 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.283 3.717 15 O -0.415 6.415 16 C 0.006 3.994 17 H 0.108 0.892 18 C -0.159 4.159 19 C -0.169 4.169 20 C -0.022 4.022 21 N -0.337 5.337 22 C 0.317 3.683 23 C -0.225 4.225 24 O -0.407 6.407 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.454 5.025 -13.292 18.252 hybrid contribution 1.277 -0.102 -0.187 1.294 sum -10.178 4.923 -13.479 17.593 Atomic orbital electron populations 1.21826 0.98477 0.97800 1.01131 1.21924 0.92490 0.99902 1.02197 1.18748 0.94143 0.88983 0.81119 0.93469 1.21241 0.90780 1.38662 1.06274 0.92147 1.24883 0.98570 0.94877 0.95388 1.69901 1.35063 1.37842 1.09314 0.86458 0.84949 0.77595 0.78149 1.20582 1.21114 1.19871 1.46419 1.14372 1.56266 1.18394 1.20381 0.83040 0.79355 0.88897 1.90644 1.51651 1.59293 1.39932 1.21576 0.90834 0.91925 0.95051 0.89180 1.22596 0.98911 0.97631 0.96716 1.22776 0.97595 0.99494 0.97006 1.22343 0.89406 0.98598 0.91884 1.48228 1.12835 1.27721 1.44926 1.20397 0.90460 0.79711 0.77712 1.21860 0.95958 1.00814 1.03844 1.90776 1.35922 1.69718 1.44247 0.93269 0.95961 0.94430 0.88351 0.95079 0.92648 0.78212 0.89251 0.89844 0.90368 0.89548 0.90388 0.91058 0.88810 0.89128 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 7.14 2.24 -69.08 -0.15 6.99 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.57 8.73 -34.44 -0.30 -14.88 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.53 11.29 55.43 0.63 -24.90 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -15.40 5.02 -54.93 -0.28 -15.67 16 14 C 0.50 10.48 4.85 -10.99 -0.05 10.42 16 15 O -0.54 -13.29 13.23 5.56 0.07 -13.22 16 16 C 0.11 1.77 3.26 -68.11 -0.22 1.55 16 17 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 18 C -0.12 -1.33 6.47 -24.89 -0.16 -1.50 16 19 C -0.13 -1.05 7.09 -24.58 -0.17 -1.22 16 20 C 0.10 0.98 6.67 -2.53 -0.02 0.97 16 21 N -0.60 -8.83 2.76 -164.32 -0.45 -9.29 16 22 C 0.53 8.80 7.34 -10.98 -0.08 8.72 16 23 C -0.17 -1.81 9.90 36.01 0.36 -1.45 16 24 O -0.53 -11.77 16.89 5.56 0.09 -11.68 16 25 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 28 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.39 7.32 8.54 -40.82 -0.35 6.97 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.04 7.84 -51.93 -0.41 0.64 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.58 6.52 -51.93 -0.34 0.24 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -35.59 321.84 -7.03 -42.62 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.19 Total: 5.73 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.73 Total: 5.31 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.10 Total: -49.86 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.17 Total: -24.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.59 -7.03 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273817928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.194 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds