Wall clock time and date at job start Mon Mar 30 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09007 * 109.87464 * 318.98284 * 16 14 13 18 18 C 1.54326 * 109.88342 * 79.99688 * 16 14 13 19 19 C 1.55163 * 102.94307 * 141.61046 * 18 16 14 20 20 C 1.54910 * 101.58071 * 324.50196 * 19 18 16 21 21 N 1.47021 * 109.88482 * 197.80876 * 16 14 13 22 22 C 1.34780 * 125.65180 * 61.61847 * 21 16 14 23 23 C 1.50702 * 120.00282 * 180.02562 * 22 21 16 24 24 O 1.21282 * 119.99594 * 0.02562 * 22 21 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08998 * 110.72289 * 259.97405 * 18 16 14 33 33 H 1.09002 * 110.71942 * 23.07555 * 18 16 14 34 34 H 1.08997 * 111.00034 * 82.57274 * 19 18 16 35 35 H 1.08996 * 111.00224 * 206.42806 * 19 18 16 36 36 H 1.08995 * 110.37095 * 155.84676 * 20 19 18 37 37 H 1.09002 * 110.36593 * 278.05973 * 20 19 18 38 38 H 1.09001 * 109.46302 * 89.99871 * 23 22 21 39 39 H 1.08991 * 109.47099 * 209.99892 * 23 22 21 40 40 H 1.09001 * 109.46916 * 330.00640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.8767 3.9106 -3.0486 18 6 -0.4078 2.2801 -3.6856 19 6 -1.6015 2.9689 -4.3983 20 6 -2.2473 3.7574 -3.2317 21 7 -1.1107 4.2275 -2.4190 22 6 -1.1217 5.2949 -1.5963 23 6 -2.3737 6.1209 -1.4502 24 8 -0.1240 5.5907 -0.9734 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.3946 2.0700 -4.3928 33 1 -0.7288 1.3660 -3.1860 34 1 -1.2530 3.6437 -5.1802 35 1 -2.2944 2.2306 -4.8017 36 1 -2.8156 4.6047 -3.6152 37 1 -2.8920 3.1043 -2.6435 38 1 -2.9814 5.7191 -0.6395 39 1 -2.1041 7.1527 -1.2252 40 1 -2.9411 6.0881 -2.3803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273817928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:25 Heat of formation + Delta-G solvation = -102.477917 kcal Electronic energy + Delta-G solvation = -21685.651575 eV Core-core repulsion = 18499.078208 eV Total energy + Delta-G solvation = -3186.573367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63998 -39.95846 -38.22861 -36.80868 -34.35519 -33.23069 -32.72573 -30.92218 -29.81317 -28.67312 -25.36541 -24.62176 -22.81821 -22.00933 -21.24450 -20.28184 -18.92143 -18.19494 -17.86761 -17.12944 -16.74078 -16.30365 -16.13169 -15.81690 -15.29243 -14.64435 -14.59257 -14.46427 -13.95018 -13.86728 -13.49073 -13.45322 -13.23193 -13.20773 -13.03172 -12.89059 -12.74229 -12.57058 -12.18529 -12.09674 -12.03143 -11.74799 -11.59281 -11.09629 -10.96979 -10.73749 -10.55202 -9.68226 -9.60702 -8.18921 -6.36833 1.40806 1.42643 1.52589 1.56290 1.83195 2.05444 2.35913 2.71121 3.10064 3.49671 3.62308 3.88670 3.94479 4.17988 4.20349 4.44306 4.45078 4.52631 4.56991 4.58880 4.72755 4.75561 4.86049 4.92351 5.00092 5.02340 5.11115 5.20184 5.27754 5.34970 5.41729 5.53405 5.61294 5.76943 5.91988 6.14911 6.52512 6.71387 6.97844 7.18286 7.30737 7.59541 8.86678 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.005330 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.186910 B = 5251.988419 C = 5563.308597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C 0.281 3.719 4 H -0.017 1.017 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.493 3.507 15 O -0.582 6.582 16 C 0.113 3.887 17 H 0.094 0.906 18 C -0.116 4.116 19 C -0.115 4.115 20 C 0.090 3.910 21 N -0.604 5.604 22 C 0.510 3.490 23 C -0.155 4.155 24 O -0.604 6.604 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 4.854 -17.896 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.001 0.999 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.182 1.182 13 N -0.355 5.355 14 C 0.278 3.722 15 O -0.463 6.463 16 C 0.005 3.995 17 H 0.112 0.888 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.031 4.031 21 N -0.337 5.337 22 C 0.302 3.698 23 C -0.214 4.214 24 O -0.485 6.485 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.213 4.962 -16.679 21.259 hybrid contribution 1.442 -0.073 0.863 1.682 sum -10.771 4.889 -15.816 19.750 Atomic orbital electron populations 1.21643 0.96902 0.99118 0.99991 1.21736 0.93800 0.98670 1.01402 1.18312 0.93586 0.89264 0.81146 0.99864 1.21587 0.91469 1.38879 1.06875 0.91306 1.25812 1.03615 0.94289 0.94886 1.70061 1.37164 1.38419 1.09823 0.85343 0.78802 0.77415 0.78760 1.20798 1.20480 1.18164 1.46222 1.15428 1.56447 1.17395 1.21447 0.81913 0.78328 0.90464 1.90615 1.52806 1.60740 1.42109 1.21683 0.92015 0.93077 0.92727 0.88793 1.22670 1.01269 0.95593 0.95857 1.22830 0.96257 0.99844 0.96308 1.22744 0.88182 1.00332 0.91838 1.48517 1.14028 1.26618 1.44552 1.21536 0.91252 0.80285 0.76743 1.21881 0.93478 0.99826 1.06170 1.90733 1.38793 1.71828 1.47181 0.96427 0.93194 0.93525 0.91203 0.93514 0.92571 0.76463 0.86645 0.91384 0.88192 0.86721 0.86551 0.91539 0.88460 0.88653 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 15.44 2.24 44.24 0.10 15.54 16 4 H -0.02 -1.11 7.58 -2.38 -0.02 -1.13 16 5 C -0.55 -30.94 8.73 25.60 0.22 -30.72 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -54.84 11.29 21.45 0.24 -54.60 16 9 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.71 -31.67 5.02 -446.09 -2.24 -33.91 16 14 C 0.49 21.23 4.85 87.66 0.43 21.65 16 15 O -0.58 -30.25 13.23 -3.03 -0.04 -30.29 16 16 C 0.11 3.42 3.26 44.59 0.15 3.57 16 17 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 18 C -0.12 -2.23 6.47 31.79 0.21 -2.03 16 19 C -0.11 -1.30 7.09 31.99 0.23 -1.07 16 20 C 0.09 1.43 6.67 86.85 0.58 2.01 16 21 N -0.60 -16.94 2.76 -792.16 -2.18 -19.12 16 22 C 0.51 17.00 7.34 87.66 0.64 17.65 16 23 C -0.15 -3.10 9.90 71.24 0.71 -2.40 16 24 O -0.60 -28.08 16.89 -3.04 -0.05 -28.13 16 25 H 0.02 0.88 7.85 -2.39 -0.02 0.86 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.05 5.65 -2.38 -0.01 2.03 16 28 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 31 H 0.40 15.30 8.54 -92.71 -0.79 14.51 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.55 7.84 -2.39 -0.02 1.53 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.98 6.75 -2.39 -0.02 0.97 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.12 1.31 6.52 -2.39 -0.02 1.29 16 Total: -1.00 -84.97 321.84 2.48 -82.49 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.25 Total: 22.86 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 4.48 Total: 14.69 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.18 Total: -107.63 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: -0.09 Total: -58.42 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -84.97 2.48 -82.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273817928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.991 kcal (2) G-P(sol) polarization free energy of solvation -84.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds