Wall clock time and date at job start Mon Mar 30 2020 01:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50707 * 119.99867 * 2 1 4 4 C 1.53005 * 109.46957 * 240.00639 * 3 2 1 5 5 O 1.42898 * 109.47061 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.46827 * 120.00498 * 3 2 1 7 7 C 1.50707 * 109.46827 * 179.97438 * 6 3 2 8 8 O 1.21275 * 120.00197 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99596 * 180.02562 * 7 6 3 10 10 C 1.46969 * 120.59184 * 179.97438 * 9 7 6 11 11 C 1.53365 * 108.63823 * 235.24762 * 10 9 7 12 12 N 1.46971 * 108.63406 * 310.57818 * 11 10 9 13 13 C 1.36933 * 120.58954 * 235.20080 * 12 11 10 14 14 H 1.08004 * 119.99676 * 151.84704 * 13 12 11 15 15 C 1.38804 * 120.00274 * 331.57456 * 13 12 11 16 16 N 1.31613 * 120.00257 * 342.82344 * 15 13 12 17 17 Si 1.86809 * 120.00042 * 162.81945 * 15 13 12 18 18 H 1.48504 * 109.46931 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46750 * 119.99895 * 17 15 13 20 20 H 1.48498 * 109.47076 * 239.99975 * 17 15 13 21 21 C 1.46964 * 118.81046 * 55.47559 * 12 11 10 22 22 C 1.46965 * 120.59893 * 0.02562 * 9 7 6 23 23 H 1.07997 * 120.00120 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99371 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00405 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46797 * 299.99654 * 4 3 2 27 27 H 1.08992 * 109.47522 * 59.99886 * 4 3 2 28 28 H 1.09000 * 109.46737 * 180.02562 * 4 3 2 29 29 H 0.96693 * 114.00122 * 59.99659 * 5 3 2 30 30 H 1.09008 * 109.47542 * 60.00220 * 6 3 2 31 31 H 1.08996 * 109.47528 * 300.00248 * 6 3 2 32 32 H 1.09001 * 109.60759 * 115.50025 * 10 9 7 33 33 H 1.08998 * 109.74755 * 355.07824 * 10 9 7 34 34 H 1.08993 * 109.61301 * 190.83327 * 11 10 9 35 35 H 1.09004 * 109.75220 * 70.40370 * 11 10 9 36 36 H 0.97004 * 120.00510 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.60931 * 64.27031 * 21 12 11 38 38 H 1.09004 * 109.60392 * 184.78099 * 21 12 11 39 39 H 1.09002 * 109.60509 * 244.49992 * 22 9 7 40 40 H 1.09000 * 109.60856 * 4.83277 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2494 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3861 1.2491 7 6 3.6972 2.6910 1.2488 8 8 3.5462 3.4784 0.3389 9 7 4.5400 2.9824 2.2593 10 6 5.2823 4.2508 2.2720 11 6 6.7793 3.9415 2.3963 12 7 6.9730 2.9964 3.5050 13 6 7.8301 3.2922 4.5312 14 1 7.6586 2.8789 5.5141 15 6 8.9225 4.1186 4.3067 16 7 9.3352 4.3446 3.0776 17 14 9.8068 4.9102 5.7493 18 1 9.1519 4.4994 7.0172 19 1 11.2256 4.4719 5.7609 20 1 9.7463 6.3880 5.6164 21 6 6.2350 1.7255 3.4895 22 6 4.7342 2.0371 3.3677 23 1 -0.5400 0.9353 0.0004 24 1 -0.5399 -0.9354 -0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 3.6514 0.5578 -1.2494 27 1 2.3164 1.3286 -2.1393 28 1 3.4884 2.3301 -1.2491 29 1 0.5439 2.4030 0.7658 30 1 3.6516 0.5576 1.2491 31 1 2.3167 1.3283 2.1392 32 1 4.9616 4.8539 3.1214 33 1 5.0969 4.7953 1.3461 34 1 7.3273 4.8614 2.5999 35 1 7.1419 3.4972 1.4693 36 1 10.0988 4.9219 2.9207 37 1 6.5569 1.1260 2.6381 38 1 6.4235 1.1818 4.4153 39 1 4.3744 2.4823 4.2954 40 1 4.1840 1.1182 3.1654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279419205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:07 Heat of formation + Delta-G solvation = -31.087572 kcal Electronic energy + Delta-G solvation = -21393.427143 eV Core-core repulsion = 18209.949494 eV Total energy + Delta-G solvation = -3183.477649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04438 -38.15723 -36.55987 -33.89124 -33.05608 -31.50164 -31.18502 -30.22226 -28.09449 -26.56772 -23.73988 -23.12963 -22.34604 -20.46074 -19.71514 -18.58175 -17.29443 -16.74099 -16.16951 -15.67780 -15.31060 -14.82212 -14.75384 -14.34462 -13.72822 -13.64272 -13.28763 -13.14240 -12.93188 -12.56153 -12.27971 -12.12752 -11.78710 -11.59869 -11.43264 -11.25942 -11.08252 -10.84316 -10.71271 -10.55923 -10.24618 -10.16759 -9.96342 -9.82170 -9.58488 -9.12147 -8.60026 -8.18399 -6.72486 -5.86255 -3.31932 2.02720 3.04935 3.32942 3.40718 3.42545 3.47645 4.23639 4.42672 4.57022 4.73933 4.93902 5.07315 5.10199 5.25922 5.31552 5.50368 5.61960 5.66383 5.72208 5.76166 5.86972 5.90634 6.04913 6.16437 6.31534 6.35414 6.37854 6.45487 6.49738 6.61736 6.68518 6.89384 7.27076 7.54708 7.68030 7.71205 7.96505 8.34762 8.66548 9.10553 9.73321 10.30097 11.21007 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.004207 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.628218 B = 6654.263673 C = 6866.582095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.182 4.182 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.163 4.163 7 C 0.509 3.491 8 O -0.534 6.534 9 N -0.600 5.600 10 C 0.088 3.912 11 C 0.158 3.842 12 N -0.591 5.591 13 C -0.258 4.258 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.900 5.900 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.131 3.869 22 C 0.089 3.911 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.366 0.634 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.255 0.745 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 -8.317 -2.649 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.201 4.201 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.203 4.203 7 C 0.297 3.703 8 O -0.411 6.411 9 N -0.333 5.333 10 C -0.035 4.035 11 C 0.032 3.968 12 N -0.314 5.314 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.544 5.544 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.214 1.214 21 C 0.003 3.997 22 C -0.036 4.036 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.213 0.787 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.164 -7.648 -3.727 16.522 hybrid contribution 0.311 0.008 1.398 1.432 sum -13.853 -7.639 -2.329 15.990 Atomic orbital electron populations 1.23837 0.96033 1.02236 1.00169 1.23672 0.96745 0.98973 1.00695 1.19872 0.87938 0.83764 0.94878 1.21937 0.98784 1.04656 0.95005 1.86727 1.50056 1.49059 1.48369 1.22384 1.00241 0.97763 0.99954 1.20300 0.79755 0.88181 0.82081 1.90626 1.65031 1.50291 1.35186 1.48098 1.42487 1.20279 1.22445 1.22455 0.95248 0.84362 1.01454 1.21185 0.89292 0.96315 0.89997 1.44020 1.48923 1.13839 1.24631 1.19229 1.02725 1.28072 0.88748 0.91444 1.25090 0.96185 1.01936 0.96271 1.70028 1.26221 1.39461 1.18679 0.86211 0.79236 0.79197 0.82019 1.20197 1.21675 1.21439 1.21351 0.89131 0.89712 0.99489 1.22430 0.99968 0.91864 0.89337 0.87777 0.88369 0.86666 0.91924 0.92470 0.88490 0.78743 0.88225 0.89144 0.92412 0.90145 0.88335 0.95918 0.93482 0.95929 0.91553 0.91729 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 13.93 29.01 0.40 -1.19 16 2 C -0.18 -1.76 8.77 -36.02 -0.32 -2.07 16 3 C 0.18 2.16 0.94 -91.77 -0.09 2.07 16 4 C -0.15 -1.99 8.51 37.16 0.32 -1.67 16 5 O -0.54 -7.23 10.85 -53.47 -0.58 -7.81 16 6 C -0.16 -2.00 3.27 -27.88 -0.09 -2.09 16 7 C 0.51 8.63 7.26 -10.98 -0.08 8.55 16 8 O -0.53 -10.71 12.37 -12.68 -0.16 -10.86 16 9 N -0.60 -10.72 2.95 -172.24 -0.51 -11.23 16 10 C 0.09 1.79 6.59 -3.60 -0.02 1.76 16 11 C 0.16 3.77 5.51 -3.60 -0.02 3.75 16 12 N -0.59 -14.32 2.96 -171.80 -0.51 -14.83 16 13 C -0.26 -6.84 9.57 -15.06 -0.14 -6.98 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 15 C 0.00 0.12 4.91 -17.44 -0.09 0.03 16 16 N -0.90 -25.67 11.20 55.49 0.62 -25.04 16 17 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.13 2.54 6.70 -3.39 -0.02 2.51 16 22 C 0.09 1.41 6.52 -3.39 -0.02 1.39 16 23 H 0.10 0.88 6.41 -52.49 -0.34 0.55 16 24 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 25 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.63 5.51 -51.93 -0.29 1.34 16 29 H 0.37 3.60 8.05 45.56 0.37 3.97 16 30 H 0.10 1.10 7.72 -51.92 -0.40 0.69 16 31 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.65 7.00 -51.93 -0.36 1.28 16 34 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.86 5.91 -51.93 -0.31 0.55 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -31.67 317.32 -6.94 -38.62 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.39 Total: 4.22 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.17 Total: 6.06 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.40 Total: -51.10 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.74 Total: -18.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.67 -6.94 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279419205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.531 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds