Wall clock time and date at job start Mon Mar 30 2020 01:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50707 * 119.99867 * 2 1 4 4 C 1.53005 * 109.46957 * 240.00639 * 3 2 1 5 5 O 1.42898 * 109.47061 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.46827 * 120.00498 * 3 2 1 7 7 C 1.50707 * 109.46827 * 179.97438 * 6 3 2 8 8 O 1.21275 * 120.00197 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99596 * 180.02562 * 7 6 3 10 10 C 1.46969 * 120.59184 * 179.97438 * 9 7 6 11 11 C 1.53365 * 108.63823 * 235.24762 * 10 9 7 12 12 N 1.46971 * 108.63406 * 310.57818 * 11 10 9 13 13 C 1.36933 * 120.58954 * 235.20080 * 12 11 10 14 14 H 1.08004 * 119.99676 * 151.84704 * 13 12 11 15 15 C 1.38804 * 120.00274 * 331.57456 * 13 12 11 16 16 N 1.31613 * 120.00257 * 342.82344 * 15 13 12 17 17 Si 1.86809 * 120.00042 * 162.81945 * 15 13 12 18 18 H 1.48504 * 109.46931 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46750 * 119.99895 * 17 15 13 20 20 H 1.48498 * 109.47076 * 239.99975 * 17 15 13 21 21 C 1.46964 * 118.81046 * 55.47559 * 12 11 10 22 22 C 1.46965 * 120.59893 * 0.02562 * 9 7 6 23 23 H 1.07997 * 120.00120 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99371 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00405 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46797 * 299.99654 * 4 3 2 27 27 H 1.08992 * 109.47522 * 59.99886 * 4 3 2 28 28 H 1.09000 * 109.46737 * 180.02562 * 4 3 2 29 29 H 0.96693 * 114.00122 * 59.99659 * 5 3 2 30 30 H 1.09008 * 109.47542 * 60.00220 * 6 3 2 31 31 H 1.08996 * 109.47528 * 300.00248 * 6 3 2 32 32 H 1.09001 * 109.60759 * 115.50025 * 10 9 7 33 33 H 1.08998 * 109.74755 * 355.07824 * 10 9 7 34 34 H 1.08993 * 109.61301 * 190.83327 * 11 10 9 35 35 H 1.09004 * 109.75220 * 70.40370 * 11 10 9 36 36 H 0.97004 * 120.00510 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.60931 * 64.27031 * 21 12 11 38 38 H 1.09004 * 109.60392 * 184.78099 * 21 12 11 39 39 H 1.09002 * 109.60509 * 244.49992 * 22 9 7 40 40 H 1.09000 * 109.60856 * 4.83277 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2494 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3861 1.2491 7 6 3.6972 2.6910 1.2488 8 8 3.5462 3.4784 0.3389 9 7 4.5400 2.9824 2.2593 10 6 5.2823 4.2508 2.2720 11 6 6.7793 3.9415 2.3963 12 7 6.9730 2.9964 3.5050 13 6 7.8301 3.2922 4.5312 14 1 7.6586 2.8789 5.5141 15 6 8.9225 4.1186 4.3067 16 7 9.3352 4.3446 3.0776 17 14 9.8068 4.9102 5.7493 18 1 9.1519 4.4994 7.0172 19 1 11.2256 4.4719 5.7609 20 1 9.7463 6.3880 5.6164 21 6 6.2350 1.7255 3.4895 22 6 4.7342 2.0371 3.3677 23 1 -0.5400 0.9353 0.0004 24 1 -0.5399 -0.9354 -0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 3.6514 0.5578 -1.2494 27 1 2.3164 1.3286 -2.1393 28 1 3.4884 2.3301 -1.2491 29 1 0.5439 2.4030 0.7658 30 1 3.6516 0.5576 1.2491 31 1 2.3167 1.3283 2.1392 32 1 4.9616 4.8539 3.1214 33 1 5.0969 4.7953 1.3461 34 1 7.3273 4.8614 2.5999 35 1 7.1419 3.4972 1.4693 36 1 10.0988 4.9219 2.9207 37 1 6.5569 1.1260 2.6381 38 1 6.4235 1.1818 4.4153 39 1 4.3744 2.4823 4.2954 40 1 4.1840 1.1182 3.1654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279419205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:07 Heat of formation + Delta-G solvation = -52.548217 kcal Electronic energy + Delta-G solvation = -21394.357746 eV Core-core repulsion = 18209.949494 eV Total energy + Delta-G solvation = -3184.408252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30959 -39.33861 -38.06320 -35.60579 -33.94785 -33.06745 -32.59251 -31.59369 -29.37985 -28.16916 -25.45890 -24.56010 -23.54805 -22.01508 -20.55586 -20.08196 -18.69764 -17.96265 -17.61864 -16.86486 -16.66164 -16.44151 -16.02927 -15.50535 -15.43728 -15.23177 -14.97401 -14.55953 -14.18393 -13.74308 -13.38178 -13.19704 -13.15456 -13.07746 -12.73693 -12.63366 -12.43375 -12.38228 -12.21910 -12.01693 -11.95372 -11.84745 -11.63377 -11.07812 -10.62848 -10.46547 -10.27974 -9.73874 -8.65428 -7.88715 -5.37835 1.35637 1.46931 1.49633 1.59624 1.75335 2.12975 2.51000 3.26266 3.34900 3.59304 3.60973 3.78969 4.06281 4.08360 4.26146 4.32801 4.43245 4.45372 4.53646 4.60907 4.67154 4.74566 4.81832 4.87449 4.89212 4.99022 5.07063 5.18161 5.25917 5.38165 5.48796 5.61533 5.69808 5.72266 5.86547 6.34996 6.61549 6.90566 7.09039 7.33218 7.79144 8.32349 9.16407 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.004207 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.628218 B = 6654.263673 C = 6866.582095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.190 4.190 3 C 0.176 3.824 4 C -0.149 4.149 5 O -0.562 6.562 6 C -0.154 4.154 7 C 0.504 3.496 8 O -0.570 6.570 9 N -0.607 5.607 10 C 0.104 3.896 11 C 0.171 3.829 12 N -0.610 5.610 13 C -0.262 4.262 14 H 0.077 0.923 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.124 3.876 22 C 0.099 3.901 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.133 0.867 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.380 0.620 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.066 0.934 35 H -0.009 1.009 36 H 0.250 0.750 37 H 0.017 0.983 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 -10.533 -1.156 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.208 4.208 3 C 0.135 3.865 4 C -0.206 4.206 5 O -0.369 6.369 6 C -0.194 4.194 7 C 0.294 3.706 8 O -0.450 6.450 9 N -0.340 5.340 10 C -0.021 4.021 11 C 0.044 3.956 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.094 0.906 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.220 1.220 21 C -0.002 4.002 22 C -0.024 4.024 23 H 0.120 0.880 24 H 0.136 0.864 25 H 0.151 0.849 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.009 0.991 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.348 -9.907 -2.207 19.242 hybrid contribution 0.923 0.661 0.869 1.430 sum -15.425 -9.246 -1.338 18.033 Atomic orbital electron populations 1.24028 0.95815 1.03088 0.98254 1.23537 0.96933 0.97949 1.02355 1.19874 0.87880 0.84918 0.93870 1.21920 0.99202 1.03187 0.96308 1.86695 1.50659 1.50014 1.49519 1.22443 1.00471 0.94978 1.01483 1.21209 0.79185 0.89457 0.80734 1.90630 1.66043 1.51932 1.36357 1.48202 1.42556 1.19646 1.23606 1.21996 0.93055 0.86016 1.01023 1.20850 0.91281 0.94760 0.88682 1.44275 1.49224 1.15797 1.24023 1.19618 1.02503 1.27402 0.89698 0.90584 1.25861 0.97407 1.02985 0.98420 1.70189 1.26868 1.40530 1.20759 0.85193 0.77732 0.77682 0.79723 1.18563 1.22140 1.21985 1.21594 0.91005 0.87687 0.99942 1.22447 0.97503 0.93417 0.89061 0.88031 0.86424 0.84917 0.90289 0.92513 0.92301 0.77127 0.86094 0.85970 0.92108 0.91116 0.91571 0.99134 0.94110 0.96535 0.90157 0.90943 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 13.93 67.78 0.94 -1.41 16 2 C -0.19 -2.93 8.77 25.65 0.22 -2.71 16 3 C 0.18 3.85 0.94 -11.54 -0.01 3.84 16 4 C -0.15 -3.90 8.51 71.98 0.61 -3.29 16 5 O -0.56 -14.18 10.85 -131.54 -1.43 -15.61 16 6 C -0.15 -3.22 3.27 29.85 0.10 -3.12 16 7 C 0.50 16.30 7.26 87.66 0.64 16.94 16 8 O -0.57 -23.03 12.37 14.42 0.18 -22.85 16 9 N -0.61 -20.80 2.95 -817.25 -2.41 -23.21 16 10 C 0.10 4.27 6.59 86.41 0.57 4.84 16 11 C 0.17 8.46 5.51 86.41 0.48 8.94 16 12 N -0.61 -29.57 2.96 -697.46 -2.06 -31.64 16 13 C -0.26 -13.84 9.57 84.03 0.80 -13.04 16 14 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 16 N -0.94 -55.37 11.20 21.65 0.24 -55.12 16 17 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 C 0.12 4.58 6.70 86.55 0.58 5.16 16 22 C 0.10 2.81 6.52 86.55 0.56 3.37 16 23 H 0.10 1.41 6.41 -2.91 -0.02 1.40 16 24 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 25 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 2.01 5.51 -2.39 -0.01 2.00 16 29 H 0.38 6.61 8.05 -74.06 -0.60 6.01 16 30 H 0.12 2.08 7.72 -2.38 -0.02 2.06 16 31 H 0.12 1.84 7.91 -2.39 -0.02 1.82 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 33 H 0.07 3.02 7.00 -2.39 -0.02 3.00 16 34 H 0.07 3.68 6.00 -2.39 -0.01 3.67 16 35 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 36 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.12 2.25 5.91 -2.39 -0.01 2.24 16 Total: -1.00 -71.50 317.32 2.90 -68.60 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.43 Total: 16.77 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.91 Total: 17.13 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.23 Total: -109.98 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.25 Total: -38.45 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.50 2.90 -68.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279419205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.053 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds