Wall clock time and date at job start Mon Mar 30 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 N 1.46900 * 109.47330 * 184.76825 * 3 2 1 5 5 C 1.46900 * 110.99905 * 160.40889 * 4 3 2 6 6 C 1.53001 * 109.47034 * 287.87156 * 5 4 3 7 7 C 1.50703 * 109.46896 * 179.40192 * 6 5 4 8 8 H 1.07994 * 119.99947 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99645 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00659 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47295 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47210 * 119.99476 * 11 9 7 14 14 H 1.48500 * 109.47458 * 239.99985 * 11 9 7 15 15 C 1.46894 * 111.00198 * 284.36537 * 4 3 2 16 16 H 1.09004 * 110.66417 * 52.06269 * 15 4 3 17 17 C 1.54228 * 110.60877 * 174.99929 * 15 4 3 18 18 C 1.51307 * 103.55785 * 118.51516 * 17 15 4 19 19 O 1.21220 * 125.40025 * 180.02562 * 18 17 15 20 20 N 1.33885 * 109.20817 * 0.02562 * 18 17 15 21 21 C 1.46492 * 122.76593 * 179.97438 * 20 18 17 22 22 C 1.33876 * 114.47016 * 359.97438 * 20 18 17 23 23 O 1.21227 * 125.39231 * 180.02562 * 22 20 18 24 24 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47085 * 300.00178 * 1 2 3 26 26 H 1.08999 * 109.46971 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47116 * 240.00338 * 2 1 3 28 28 H 1.08999 * 109.46971 * 120.00090 * 2 1 3 29 29 H 1.08996 * 109.47048 * 64.76735 * 3 2 1 30 30 H 1.09007 * 109.47050 * 304.77075 * 3 2 1 31 31 H 1.08993 * 109.47588 * 47.87341 * 5 4 3 32 32 H 1.09000 * 109.46801 * 167.87431 * 5 4 3 33 33 H 1.09003 * 109.47116 * 299.39519 * 6 5 4 34 34 H 1.09000 * 109.47146 * 59.39915 * 6 5 4 35 35 H 0.96997 * 120.00982 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.60348 * 359.97438 * 17 15 4 37 37 H 1.09004 * 110.60500 * 237.03463 * 17 15 4 38 38 H 1.09009 * 109.46987 * 359.97205 * 21 20 18 39 39 H 1.09000 * 109.47367 * 119.96874 * 21 20 18 40 40 H 1.08996 * 109.47711 * 239.97723 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5045 1.4441 -0.1151 5 6 3.9947 2.7490 -0.5788 6 6 3.6469 2.9281 -2.0580 7 6 4.1368 4.2729 -2.5299 8 1 4.6449 4.9338 -1.8434 9 6 3.9353 4.6598 -3.8379 10 7 3.3162 3.8552 -4.6738 11 14 4.5419 6.3270 -4.4226 12 1 5.2007 7.0368 -3.2969 13 1 5.5158 6.1396 -5.5279 14 1 3.3910 7.1303 -4.9077 15 6 4.1331 1.0678 1.1581 16 1 3.7147 0.1334 1.5323 17 6 5.6623 0.9509 0.9949 18 6 6.2014 2.0010 1.9415 19 8 7.3744 2.2462 2.1238 20 7 5.1774 2.6165 2.5458 21 6 5.3641 3.6886 3.5265 22 6 3.9689 2.1714 2.1801 23 8 2.9107 2.5870 2.6010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7481 1.9310 0.9296 30 1 1.6086 1.9804 -0.8442 31 1 3.5247 3.5415 0.0034 32 1 5.0761 2.7970 -0.4514 33 1 4.1258 2.1418 -2.6416 34 1 2.5662 2.8693 -2.1869 35 1 3.1748 4.1272 -5.5940 36 1 5.9565 1.1716 -0.0312 37 1 6.0046 -0.0417 1.2878 38 1 6.4294 3.8765 3.6612 39 1 4.8774 4.5963 3.1695 40 1 4.9245 3.3910 4.4784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282583781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:23 Heat of formation + Delta-G solvation = -66.448908 kcal Electronic energy + Delta-G solvation = -21512.542825 eV Core-core repulsion = 18327.531793 eV Total energy + Delta-G solvation = -3185.011032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05708 -38.77795 -37.37493 -35.78806 -33.63219 -33.29534 -31.66663 -29.36024 -27.07991 -25.89574 -25.56863 -23.50938 -21.95079 -21.18719 -20.41665 -19.11154 -17.26508 -17.19042 -16.54323 -16.15055 -15.27609 -15.13895 -14.82080 -14.49023 -14.33244 -14.13419 -13.79132 -13.44402 -12.93345 -12.85771 -12.66875 -12.49999 -12.24790 -11.81753 -11.67673 -11.47609 -11.31065 -10.99100 -10.86048 -10.64677 -10.56485 -10.31348 -10.21232 -9.85484 -9.79463 -9.53171 -9.18278 -8.38838 -7.99983 -6.04960 -4.07851 1.48821 2.52049 2.69653 3.28530 3.36303 3.40143 3.93333 4.08914 4.33157 4.40274 4.52664 4.98153 5.08285 5.21229 5.24112 5.31200 5.32070 5.41808 5.45720 5.54349 5.60556 5.75305 5.79766 5.96130 6.00913 6.07125 6.22016 6.30466 6.46345 6.54717 6.75508 6.78428 7.15793 7.25652 7.31446 7.67478 7.75475 7.77351 7.98311 8.34677 8.98643 9.56475 11.06158 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.006720 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.939891 B = 4165.837657 C = 5483.850277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.035 3.965 4 N -0.503 5.503 5 C 0.048 3.952 6 C 0.034 3.966 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.051 3.949 16 H 0.129 0.871 17 C -0.154 4.154 18 C 0.530 3.470 19 O -0.487 6.487 20 N -0.577 5.577 21 C 0.066 3.934 22 C 0.498 3.502 23 O -0.479 6.479 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -7.847 13.615 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.092 4.092 4 N -0.226 5.226 5 C -0.078 4.078 6 C -0.004 4.004 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.061 4.061 16 H 0.147 0.853 17 C -0.194 4.194 18 C 0.320 3.680 19 O -0.359 6.359 20 N -0.321 5.321 21 C -0.076 4.076 22 C 0.285 3.715 23 O -0.349 6.349 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.391 -7.816 13.425 15.539 hybrid contribution 0.098 1.747 0.275 1.772 sum 0.489 -6.068 13.699 14.991 Atomic orbital electron populations 1.21722 0.95947 1.01223 1.01941 1.21468 0.95208 0.96641 1.01970 1.22467 0.86373 0.97486 1.02842 1.62590 1.07025 1.32543 1.20490 1.22590 0.98767 0.85583 1.00832 1.19052 0.97261 0.96862 0.87191 1.21175 1.37729 1.01848 0.95584 0.92891 1.24959 0.95151 0.97169 0.96794 1.69964 1.41876 1.36144 1.04966 0.86558 0.78597 0.84204 0.78796 1.19807 1.20869 1.20969 1.22767 0.95894 0.97750 0.89730 0.85338 1.22680 0.94115 0.99851 1.02759 1.20934 0.84889 0.82054 0.80131 1.90748 1.16105 1.65718 1.63376 1.46794 1.09764 1.35472 1.40085 1.21903 1.04174 0.89878 0.91620 1.22376 0.82671 0.84627 0.81801 1.90709 1.28160 1.60707 1.55301 0.92945 0.93047 0.92403 0.90956 0.92893 0.92645 0.89204 0.95650 0.92017 0.95375 0.96164 0.92953 0.84471 0.85882 0.89006 0.90580 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.11 -1.48 5.98 -26.73 -0.16 -1.64 16 3 C 0.04 0.57 4.73 -3.83 -0.02 0.55 16 4 N -0.50 -8.19 4.37 -226.91 -0.99 -9.18 16 5 C 0.05 0.97 3.89 -3.82 -0.01 0.96 16 6 C 0.03 0.84 5.05 -27.88 -0.14 0.70 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 11 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.05 0.67 3.08 -67.92 -0.21 0.46 16 16 H 0.13 1.35 6.84 -51.93 -0.35 0.99 16 17 C -0.15 -1.80 6.03 -26.94 -0.16 -1.96 16 18 C 0.53 7.35 7.84 -11.09 -0.09 7.26 16 19 O -0.49 -7.92 17.23 5.61 0.10 -7.83 16 20 N -0.58 -7.89 2.95 -122.73 -0.36 -8.26 16 21 C 0.07 0.76 10.65 59.84 0.64 1.39 16 22 C 0.50 7.33 6.06 -11.09 -0.07 7.27 16 23 O -0.48 -8.20 15.66 5.60 0.09 -8.11 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.60 7.00 -51.93 -0.36 0.24 16 29 H 0.06 0.93 5.76 -51.93 -0.30 0.63 16 30 H 0.09 1.65 6.25 -51.93 -0.32 1.33 16 31 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 32 H 0.06 1.20 5.95 -51.93 -0.31 0.89 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.53 6.53 -51.93 -0.34 0.20 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 1.78 6.72 -51.93 -0.35 1.43 16 37 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.99 7.41 -51.92 -0.38 0.60 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -31.97 323.34 -6.89 -38.85 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.04 Total: -1.65 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.27 Total: 0.30 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.62 Total: -42.96 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.18 Total: -15.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.97 -6.89 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282583781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.598 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds