Wall clock time and date at job start Mon Mar 30 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 N 1.46900 * 109.47330 * 184.76825 * 3 2 1 5 5 C 1.46900 * 110.99905 * 160.40889 * 4 3 2 6 6 C 1.53001 * 109.47034 * 287.87156 * 5 4 3 7 7 C 1.50703 * 109.46896 * 179.40192 * 6 5 4 8 8 H 1.07994 * 119.99947 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99645 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00659 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47295 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47210 * 119.99476 * 11 9 7 14 14 H 1.48500 * 109.47458 * 239.99985 * 11 9 7 15 15 C 1.46894 * 111.00198 * 284.36537 * 4 3 2 16 16 H 1.09004 * 110.66417 * 52.06269 * 15 4 3 17 17 C 1.54228 * 110.60877 * 174.99929 * 15 4 3 18 18 C 1.51307 * 103.55785 * 118.51516 * 17 15 4 19 19 O 1.21220 * 125.40025 * 180.02562 * 18 17 15 20 20 N 1.33885 * 109.20817 * 0.02562 * 18 17 15 21 21 C 1.46492 * 122.76593 * 179.97438 * 20 18 17 22 22 C 1.33876 * 114.47016 * 359.97438 * 20 18 17 23 23 O 1.21227 * 125.39231 * 180.02562 * 22 20 18 24 24 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47085 * 300.00178 * 1 2 3 26 26 H 1.08999 * 109.46971 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47116 * 240.00338 * 2 1 3 28 28 H 1.08999 * 109.46971 * 120.00090 * 2 1 3 29 29 H 1.08996 * 109.47048 * 64.76735 * 3 2 1 30 30 H 1.09007 * 109.47050 * 304.77075 * 3 2 1 31 31 H 1.08993 * 109.47588 * 47.87341 * 5 4 3 32 32 H 1.09000 * 109.46801 * 167.87431 * 5 4 3 33 33 H 1.09003 * 109.47116 * 299.39519 * 6 5 4 34 34 H 1.09000 * 109.47146 * 59.39915 * 6 5 4 35 35 H 0.96997 * 120.00982 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.60348 * 359.97438 * 17 15 4 37 37 H 1.09004 * 110.60500 * 237.03463 * 17 15 4 38 38 H 1.09009 * 109.46987 * 359.97205 * 21 20 18 39 39 H 1.09000 * 109.47367 * 119.96874 * 21 20 18 40 40 H 1.08996 * 109.47711 * 239.97723 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5045 1.4441 -0.1151 5 6 3.9947 2.7490 -0.5788 6 6 3.6469 2.9281 -2.0580 7 6 4.1368 4.2729 -2.5299 8 1 4.6449 4.9338 -1.8434 9 6 3.9353 4.6598 -3.8379 10 7 3.3162 3.8552 -4.6738 11 14 4.5419 6.3270 -4.4226 12 1 5.2007 7.0368 -3.2969 13 1 5.5158 6.1396 -5.5279 14 1 3.3910 7.1303 -4.9077 15 6 4.1331 1.0678 1.1581 16 1 3.7147 0.1334 1.5323 17 6 5.6623 0.9509 0.9949 18 6 6.2014 2.0010 1.9415 19 8 7.3744 2.2462 2.1238 20 7 5.1774 2.6165 2.5458 21 6 5.3641 3.6886 3.5265 22 6 3.9689 2.1714 2.1801 23 8 2.9107 2.5870 2.6010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7481 1.9310 0.9296 30 1 1.6086 1.9804 -0.8442 31 1 3.5247 3.5415 0.0034 32 1 5.0761 2.7970 -0.4514 33 1 4.1258 2.1418 -2.6416 34 1 2.5662 2.8693 -2.1869 35 1 3.1748 4.1272 -5.5940 36 1 5.9565 1.1716 -0.0312 37 1 6.0046 -0.0417 1.2878 38 1 6.4294 3.8765 3.6612 39 1 4.8774 4.5963 3.1695 40 1 4.9245 3.3910 4.4784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282583781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:23 Heat of formation + Delta-G solvation = -88.278958 kcal Electronic energy + Delta-G solvation = -21513.489447 eV Core-core repulsion = 18327.531793 eV Total energy + Delta-G solvation = -3185.957654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.19385 -39.98526 -38.70141 -36.96914 -35.42189 -34.56161 -33.14884 -30.99190 -28.07544 -27.28061 -27.02260 -25.02513 -23.28776 -22.43393 -21.83980 -20.31589 -18.76223 -18.33908 -18.14723 -17.46879 -16.62033 -16.51811 -16.25328 -16.04348 -15.59752 -15.33715 -14.97838 -14.82688 -14.27213 -14.07233 -13.92659 -13.62309 -13.56472 -13.37665 -13.12119 -12.88641 -12.66291 -12.51781 -12.45469 -12.15014 -11.90087 -11.68244 -11.52096 -11.32590 -11.30626 -11.21272 -10.91161 -10.55718 -9.37465 -8.22534 -6.33250 0.34163 1.37353 1.38221 1.45340 1.50337 1.60545 2.36715 2.70120 3.04053 3.11226 3.26894 3.38940 3.92781 4.10148 4.16479 4.22201 4.28561 4.32473 4.38608 4.45926 4.55045 4.63426 4.67927 4.68831 4.78582 4.92413 4.97456 5.04838 5.22966 5.37298 5.41015 5.44520 5.64137 5.65359 5.71258 5.96380 6.02948 6.16573 6.23638 6.63617 6.82724 7.35672 8.89253 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.006720 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.939891 B = 4165.837657 C = 5483.850277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.039 3.961 4 N -0.503 5.503 5 C 0.071 3.929 6 C 0.043 3.957 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.278 1.278 15 C 0.053 3.947 16 H 0.167 0.833 17 C -0.145 4.145 18 C 0.531 3.469 19 O -0.513 6.513 20 N -0.580 5.580 21 C 0.060 3.940 22 C 0.497 3.503 23 O -0.506 6.506 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.007 0.993 32 H 0.068 0.932 33 H 0.006 0.994 34 H -0.004 1.004 35 H 0.265 0.735 36 H 0.127 0.873 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -8.732 14.626 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.088 4.088 4 N -0.226 5.226 5 C -0.057 4.057 6 C 0.005 3.995 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.204 1.204 15 C -0.059 4.059 16 H 0.184 0.816 17 C -0.184 4.184 18 C 0.322 3.678 19 O -0.387 6.387 20 N -0.323 5.323 21 C -0.081 4.081 22 C 0.285 3.715 23 O -0.378 6.378 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.025 0.975 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.186 0.814 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.025 -8.706 14.449 16.900 hybrid contribution -0.116 2.017 -0.004 2.020 sum 0.908 -6.689 14.445 15.945 Atomic orbital electron populations 1.21718 0.95110 1.02491 1.01366 1.21430 0.95905 0.94187 1.02962 1.22433 0.86071 0.99443 1.00892 1.62499 1.07371 1.29804 1.22924 1.22119 0.98916 0.87245 0.97390 1.18845 0.95254 0.95126 0.90258 1.21577 1.37835 1.03053 0.96034 0.93010 1.25831 0.95202 1.01024 0.96975 1.70077 1.42859 1.38116 1.05412 0.85503 0.78258 0.79500 0.78429 1.19141 1.19980 1.20351 1.23003 0.96858 0.98494 0.87513 0.81607 1.22755 0.92603 1.01461 1.01577 1.21274 0.84454 0.82079 0.80013 1.90741 1.17080 1.66551 1.64294 1.46891 1.09532 1.35653 1.40247 1.22060 1.04773 0.89262 0.91986 1.22586 0.82456 0.84665 0.81770 1.90700 1.29100 1.61593 1.56379 0.90706 0.92818 0.93865 0.91415 0.90258 0.93277 0.92674 0.97482 0.91371 0.97547 0.98611 0.92637 0.85527 0.81395 0.88326 0.91173 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.11 -2.58 5.98 30.60 0.18 -2.40 16 3 C 0.04 1.24 4.73 86.30 0.41 1.65 16 4 N -0.50 -16.03 4.37 -871.79 -3.81 -19.84 16 5 C 0.07 2.87 3.89 86.30 0.34 3.20 16 6 C 0.04 2.20 5.05 29.85 0.15 2.35 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.01 0.48 5.46 84.66 0.46 0.94 16 10 N -0.92 -55.54 13.29 21.45 0.28 -55.25 16 11 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 C 0.05 1.25 3.08 44.78 0.14 1.39 16 16 H 0.17 2.74 6.84 -2.39 -0.02 2.73 16 17 C -0.14 -2.97 6.03 30.46 0.18 -2.79 16 18 C 0.53 13.72 7.84 87.99 0.69 14.41 16 19 O -0.51 -15.92 17.23 -2.85 -0.05 -15.97 16 20 N -0.58 -15.03 2.95 -780.05 -2.30 -17.34 16 21 C 0.06 1.32 10.65 127.77 1.36 2.68 16 22 C 0.50 13.90 6.06 87.99 0.53 14.44 16 23 O -0.51 -16.89 15.66 -2.87 -0.04 -16.94 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.51 7.00 -2.39 -0.02 1.50 16 29 H 0.05 1.64 5.76 -2.39 -0.01 1.62 16 30 H 0.05 2.13 6.25 -2.38 -0.01 2.12 16 31 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 32 H 0.07 2.66 5.95 -2.39 -0.01 2.65 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.00 -0.25 6.53 -2.39 -0.02 -0.26 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.13 3.03 6.72 -2.39 -0.02 3.02 16 37 H 0.17 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.10 2.02 7.41 -2.38 -0.02 2.00 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.34 323.34 2.53 -67.81 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.03 Total: 8.64 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.39 Total: 2.50 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -5.83 Total: -92.43 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.09 Total: -32.91 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.34 2.53 -67.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282583781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.469 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds