Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 N 1.46501 * 109.47340 * 175.00162 * 3 2 1 5 5 C 1.37091 * 119.99765 * 90.74545 * 4 3 2 6 6 H 1.08003 * 120.00716 * 314.85369 * 5 4 3 7 7 C 1.38953 * 119.99703 * 134.85890 * 5 4 3 8 8 N 1.31411 * 120.00180 * 160.38092 * 7 5 4 9 9 Si 1.86801 * 120.00070 * 340.37634 * 7 5 4 10 10 H 1.48497 * 109.47077 * 95.24707 * 9 7 5 11 11 H 1.48497 * 109.47140 * 215.24954 * 9 7 5 12 12 H 1.48497 * 109.46978 * 335.24778 * 9 7 5 13 13 C 1.34777 * 119.99605 * 270.75076 * 4 3 2 14 14 O 1.21301 * 119.99367 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00731 * 359.97438 * 13 4 3 16 16 C 1.52990 * 109.47262 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.30311 * 55.41874 * 16 15 13 18 18 C 1.52920 * 109.29976 * 175.00182 * 16 15 13 19 19 C 1.53348 * 108.67549 * 171.06721 * 18 16 15 20 20 C 1.53076 * 108.42434 * 292.46559 * 19 18 16 21 21 C 1.50178 * 109.88745 * 48.89985 * 20 19 18 22 22 O 1.21283 * 118.24190 * 162.39060 * 21 20 19 23 23 N 1.33349 * 123.51020 * 342.42219 * 21 20 19 24 24 H 1.08991 * 109.46908 * 64.74538 * 1 2 3 25 25 H 1.09005 * 109.47115 * 184.74307 * 1 2 3 26 26 H 1.08998 * 109.47069 * 304.74399 * 1 2 3 27 27 H 1.08996 * 109.46801 * 239.99607 * 2 1 3 28 28 H 1.09006 * 109.46915 * 119.99909 * 2 1 3 29 29 H 1.09001 * 109.47124 * 295.00416 * 3 2 1 30 30 H 1.09003 * 109.47211 * 55.00186 * 3 2 1 31 31 H 0.96997 * 120.00777 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47104 * 300.00480 * 15 13 4 33 33 H 1.08999 * 109.46517 * 60.00217 * 15 13 4 34 34 H 1.09001 * 109.60173 * 290.81948 * 18 16 15 35 35 H 1.08997 * 109.60925 * 51.30764 * 18 16 15 36 36 H 1.09002 * 109.67669 * 52.20202 * 19 18 16 37 37 H 1.08999 * 109.67427 * 172.70027 * 19 18 16 38 38 H 1.08998 * 109.40192 * 169.02638 * 20 19 18 39 39 H 1.08996 * 109.40172 * 288.86025 * 20 19 18 40 40 H 0.97003 * 117.94807 * 182.22201 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 0.1203 5 6 4.2807 1.4260 -1.0065 6 1 4.0460 0.7499 -1.8153 7 6 5.3742 2.2774 -1.1079 8 7 6.3317 2.0174 -1.9695 9 14 5.4830 3.7918 -0.0196 10 1 6.2938 3.4787 1.1845 11 1 6.1240 4.8986 -0.7741 12 1 4.1176 4.2017 0.3960 13 6 4.0757 1.4637 1.3388 14 8 5.2847 1.4647 1.4384 15 6 3.2177 1.4841 2.5775 16 6 4.1130 1.5044 3.8179 17 1 4.7974 2.3504 3.7545 18 6 3.2429 1.6508 5.0669 19 6 4.1234 1.4454 6.3055 20 6 4.5776 -0.0161 6.3392 21 6 5.1208 -0.4133 4.9966 22 8 5.8118 -1.4077 4.9284 23 7 4.8845 0.2691 3.8756 24 1 -0.3633 0.4384 -0.9294 25 1 -0.3633 -1.0242 0.0850 26 1 -0.3633 0.5857 0.8444 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.7516 1.9298 -0.9314 30 1 1.6055 1.9815 0.8418 31 1 7.0949 2.6119 -2.0406 32 1 2.5888 2.3744 2.5691 33 1 2.5880 0.5946 2.5979 34 1 2.8038 2.6481 5.0918 35 1 2.4522 0.9008 5.0518 36 1 4.9939 2.0990 6.2495 37 1 3.5508 1.6730 7.2046 38 1 5.3545 -0.1365 7.0941 39 1 3.7291 -0.6533 6.5880 40 1 5.2487 -0.0785 3.0464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288193448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = -81.216543 kcal Electronic energy + Delta-G solvation = -21742.604579 eV Core-core repulsion = 18556.953175 eV Total energy + Delta-G solvation = -3185.651404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26813 -38.90503 -36.53659 -35.36312 -33.24006 -32.68501 -31.61015 -30.89970 -27.78570 -26.04942 -24.48845 -22.97190 -22.11147 -21.23755 -19.30626 -18.98639 -17.23063 -16.89698 -16.14842 -15.68415 -15.42573 -15.11523 -14.66093 -14.26988 -13.96182 -13.76385 -13.64055 -13.35243 -13.05099 -12.79960 -12.58684 -12.23756 -11.90125 -11.83586 -11.56147 -11.38789 -11.15723 -11.08616 -11.02061 -10.95104 -10.76134 -10.30274 -10.19307 -9.99620 -9.50707 -8.71573 -8.62291 -8.55154 -7.61646 -6.23639 -4.01429 2.91565 3.24841 3.37701 3.56340 3.62451 3.74749 4.25936 4.48861 4.59896 4.68950 4.72999 4.83743 5.15285 5.23285 5.26911 5.29156 5.36628 5.40408 5.54046 5.57414 5.64536 5.70214 5.75718 5.77758 5.88121 5.94486 5.96714 6.05399 6.15496 6.22746 6.27419 6.50826 6.69045 7.18858 7.75971 7.82316 7.96864 8.54491 8.73735 8.88409 9.39135 9.76588 10.83071 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.007451 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.704016 B = 3757.063161 C = 4586.093348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.103 3.897 4 N -0.460 5.460 5 C -0.351 4.351 6 H 0.092 0.908 7 C 0.094 3.906 8 N -0.863 5.863 9 Si 0.905 3.095 10 H -0.257 1.257 11 H -0.304 1.304 12 H -0.280 1.280 13 C 0.446 3.554 14 O -0.546 6.546 15 C -0.153 4.153 16 C 0.156 3.844 17 H 0.080 0.920 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.134 4.134 21 C 0.512 3.488 22 O -0.570 6.570 23 N -0.699 5.699 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.272 0.728 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 1.636 13.161 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.021 4.021 4 N -0.182 5.182 5 C -0.477 4.477 6 H 0.110 0.890 7 C -0.115 4.115 8 N -0.497 5.497 9 Si 0.734 3.266 10 H -0.183 1.183 11 H -0.233 1.233 12 H -0.205 1.205 13 C 0.236 3.764 14 O -0.429 6.429 15 C -0.194 4.194 16 C 0.050 3.950 17 H 0.098 0.902 18 C -0.171 4.171 19 C -0.161 4.161 20 C -0.174 4.174 21 C 0.299 3.701 22 O -0.450 6.450 23 N -0.353 5.353 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.226 1.259 13.241 17.405 hybrid contribution 0.058 0.753 -0.052 0.757 sum -11.169 2.012 13.189 17.399 Atomic orbital electron populations 1.21719 0.96102 1.01185 1.01529 1.21920 0.94885 0.98331 1.02634 1.21693 0.83109 0.95627 1.01701 1.43668 1.04140 1.65325 1.05034 1.18752 1.09753 1.22960 0.96247 0.89035 1.25300 0.94084 0.97458 0.94651 1.69758 1.07433 1.36392 1.36163 0.86457 0.78363 0.80257 0.81524 1.18259 1.23302 1.20533 1.20358 0.89000 0.82329 0.84751 1.90566 1.14184 1.52478 1.85662 1.22137 0.99223 1.04072 0.93969 1.20702 0.92699 0.87894 0.93715 0.90186 1.21974 0.98202 1.03315 0.93586 1.21654 1.00295 0.95775 0.98353 1.21635 1.02838 0.97783 0.95164 1.20131 0.80372 0.83124 0.86485 1.90739 1.39841 1.27441 1.86997 1.45731 1.53375 1.25234 1.10987 0.92747 0.93078 0.93032 0.91353 0.92400 0.90608 0.92555 0.91810 0.88826 0.89170 0.89796 0.90771 0.91034 0.90616 0.88549 0.88591 0.74823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.14 -2.08 6.24 -26.73 -0.17 -2.24 16 3 C 0.10 1.76 5.17 -4.04 -0.02 1.73 16 4 N -0.46 -10.40 2.10 -114.81 -0.24 -10.64 16 5 C -0.35 -9.64 9.63 -14.94 -0.14 -9.78 16 6 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 7 C 0.09 2.73 4.83 -17.47 -0.08 2.65 16 8 N -0.86 -26.24 13.96 55.50 0.77 -25.46 16 9 Si 0.90 23.30 25.01 -169.99 -4.25 19.05 16 10 H -0.26 -6.92 6.48 56.52 0.37 -6.56 16 11 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.45 9.75 5.55 -10.99 -0.06 9.69 16 14 O -0.55 -14.15 10.49 5.54 0.06 -14.09 16 15 C -0.15 -2.36 3.91 -27.89 -0.11 -2.47 16 16 C 0.16 2.28 2.65 -68.38 -0.18 2.10 16 17 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 18 C -0.13 -1.32 5.30 -26.59 -0.14 -1.46 16 19 C -0.12 -1.14 6.03 -26.51 -0.16 -1.30 16 20 C -0.13 -1.51 6.03 -28.10 -0.17 -1.68 16 21 C 0.51 8.55 7.71 -11.87 -0.09 8.46 16 22 O -0.57 -12.00 17.78 5.55 0.10 -11.91 16 23 N -0.70 -12.08 5.00 -54.86 -0.27 -12.35 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.87 7.21 -51.93 -0.37 0.50 16 29 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 30 H 0.06 0.80 6.47 -51.93 -0.34 0.47 16 31 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.09 1.22 7.40 -51.93 -0.38 0.84 16 33 H 0.09 1.24 7.15 -51.93 -0.37 0.87 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.41 8.48 6.84 -40.82 -0.28 8.20 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -34.71 316.83 -6.42 -41.13 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.39 Total: 5.11 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.96 Total: 4.39 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.26 Total: -48.45 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.16 Total: -26.00 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.25 Total: 19.05 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.71 -6.42 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288193448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.089 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds