Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 N 1.46501 * 109.47340 * 175.00162 * 3 2 1 5 5 C 1.37091 * 119.99765 * 90.74545 * 4 3 2 6 6 H 1.08003 * 120.00716 * 314.85369 * 5 4 3 7 7 C 1.38953 * 119.99703 * 134.85890 * 5 4 3 8 8 N 1.31411 * 120.00180 * 160.38092 * 7 5 4 9 9 Si 1.86801 * 120.00070 * 340.37634 * 7 5 4 10 10 H 1.48497 * 109.47077 * 95.24707 * 9 7 5 11 11 H 1.48497 * 109.47140 * 215.24954 * 9 7 5 12 12 H 1.48497 * 109.46978 * 335.24778 * 9 7 5 13 13 C 1.34777 * 119.99605 * 270.75076 * 4 3 2 14 14 O 1.21301 * 119.99367 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00731 * 359.97438 * 13 4 3 16 16 C 1.52990 * 109.47262 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.30311 * 55.41874 * 16 15 13 18 18 C 1.52920 * 109.29976 * 175.00182 * 16 15 13 19 19 C 1.53348 * 108.67549 * 171.06721 * 18 16 15 20 20 C 1.53076 * 108.42434 * 292.46559 * 19 18 16 21 21 C 1.50178 * 109.88745 * 48.89985 * 20 19 18 22 22 O 1.21283 * 118.24190 * 162.39060 * 21 20 19 23 23 N 1.33349 * 123.51020 * 342.42219 * 21 20 19 24 24 H 1.08991 * 109.46908 * 64.74538 * 1 2 3 25 25 H 1.09005 * 109.47115 * 184.74307 * 1 2 3 26 26 H 1.08998 * 109.47069 * 304.74399 * 1 2 3 27 27 H 1.08996 * 109.46801 * 239.99607 * 2 1 3 28 28 H 1.09006 * 109.46915 * 119.99909 * 2 1 3 29 29 H 1.09001 * 109.47124 * 295.00416 * 3 2 1 30 30 H 1.09003 * 109.47211 * 55.00186 * 3 2 1 31 31 H 0.96997 * 120.00777 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47104 * 300.00480 * 15 13 4 33 33 H 1.08999 * 109.46517 * 60.00217 * 15 13 4 34 34 H 1.09001 * 109.60173 * 290.81948 * 18 16 15 35 35 H 1.08997 * 109.60925 * 51.30764 * 18 16 15 36 36 H 1.09002 * 109.67669 * 52.20202 * 19 18 16 37 37 H 1.08999 * 109.67427 * 172.70027 * 19 18 16 38 38 H 1.08998 * 109.40192 * 169.02638 * 20 19 18 39 39 H 1.08996 * 109.40172 * 288.86025 * 20 19 18 40 40 H 0.97003 * 117.94807 * 182.22201 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 0.1203 5 6 4.2807 1.4260 -1.0065 6 1 4.0460 0.7499 -1.8153 7 6 5.3742 2.2774 -1.1079 8 7 6.3317 2.0174 -1.9695 9 14 5.4830 3.7918 -0.0196 10 1 6.2938 3.4787 1.1845 11 1 6.1240 4.8986 -0.7741 12 1 4.1176 4.2017 0.3960 13 6 4.0757 1.4637 1.3388 14 8 5.2847 1.4647 1.4384 15 6 3.2177 1.4841 2.5775 16 6 4.1130 1.5044 3.8179 17 1 4.7974 2.3504 3.7545 18 6 3.2429 1.6508 5.0669 19 6 4.1234 1.4454 6.3055 20 6 4.5776 -0.0161 6.3392 21 6 5.1208 -0.4133 4.9966 22 8 5.8118 -1.4077 4.9284 23 7 4.8845 0.2691 3.8756 24 1 -0.3633 0.4384 -0.9294 25 1 -0.3633 -1.0242 0.0850 26 1 -0.3633 0.5857 0.8444 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.7516 1.9298 -0.9314 30 1 1.6055 1.9815 0.8418 31 1 7.0949 2.6119 -2.0406 32 1 2.5888 2.3744 2.5691 33 1 2.5880 0.5946 2.5979 34 1 2.8038 2.6481 5.0918 35 1 2.4522 0.9008 5.0518 36 1 4.9939 2.0990 6.2495 37 1 3.5508 1.6730 7.2046 38 1 5.3545 -0.1365 7.0941 39 1 3.7291 -0.6533 6.5880 40 1 5.2487 -0.0785 3.0464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288193448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = -107.155115 kcal Electronic energy + Delta-G solvation = -21743.729360 eV Core-core repulsion = 18556.953175 eV Total energy + Delta-G solvation = -3186.776185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57789 -40.51302 -37.82794 -36.93607 -34.81393 -33.94971 -33.23179 -32.25384 -29.00784 -27.46732 -26.00702 -24.13573 -23.31768 -22.46195 -21.08862 -19.98336 -18.96648 -18.18340 -17.67711 -17.12653 -17.06145 -16.48847 -16.05342 -15.67956 -15.31732 -15.11261 -14.83804 -14.64864 -14.44329 -14.19584 -13.90205 -13.77207 -13.33571 -13.15534 -12.78300 -12.73734 -12.46612 -12.20787 -12.16520 -12.10209 -11.90078 -11.85707 -11.77582 -11.50237 -10.80767 -10.76450 -10.33764 -10.05649 -9.50468 -8.43197 -6.20020 1.21665 1.33397 1.46756 1.65078 1.97684 2.40234 2.41362 2.69140 3.10542 3.61249 3.71739 3.74915 3.97726 4.07949 4.13838 4.22467 4.27681 4.38054 4.52795 4.58901 4.70466 4.76410 4.76601 4.84747 4.92272 5.02408 5.08873 5.12631 5.13250 5.26815 5.33284 5.39810 5.53491 5.70871 5.76139 5.87852 6.52501 6.78100 6.93560 7.22186 7.36548 7.91099 8.67311 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.007451 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.704016 B = 3757.063161 C = 4586.093348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.098 3.902 4 N -0.478 5.478 5 C -0.345 4.345 6 H 0.056 0.944 7 C 0.039 3.961 8 N -0.916 5.916 9 Si 0.963 3.037 10 H -0.280 1.280 11 H -0.305 1.305 12 H -0.246 1.246 13 C 0.440 3.560 14 O -0.593 6.593 15 C -0.141 4.141 16 C 0.149 3.851 17 H 0.058 0.942 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.125 4.125 21 C 0.503 3.497 22 O -0.627 6.627 23 N -0.709 5.709 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.270 0.730 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 3.181 16.658 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.024 4.024 4 N -0.200 5.200 5 C -0.472 4.472 6 H 0.074 0.926 7 C -0.165 4.165 8 N -0.554 5.554 9 Si 0.790 3.210 10 H -0.207 1.207 11 H -0.234 1.234 12 H -0.170 1.170 13 C 0.232 3.768 14 O -0.478 6.478 15 C -0.181 4.181 16 C 0.044 3.956 17 H 0.076 0.924 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.165 4.165 21 C 0.292 3.708 22 O -0.512 6.512 23 N -0.358 5.358 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.309 2.840 16.755 22.873 hybrid contribution 1.299 0.132 -1.163 1.748 sum -14.010 2.971 15.593 21.172 Atomic orbital electron populations 1.21661 0.92591 1.02494 1.02889 1.21847 0.97788 0.96547 1.01037 1.21963 0.79556 0.97465 1.03418 1.43912 1.06226 1.65881 1.03964 1.18623 1.10231 1.21396 0.96996 0.92618 1.26074 0.94054 1.00310 0.96026 1.69875 1.08597 1.37941 1.38983 0.85511 0.79478 0.77201 0.78789 1.20712 1.23374 1.16980 1.21576 0.89217 0.79738 0.86291 1.90548 1.16916 1.53774 1.86586 1.22191 0.98651 1.07073 0.90216 1.20971 0.92747 0.85742 0.96098 0.92429 1.22022 0.97571 1.05864 0.90632 1.21692 1.00408 0.93584 0.99849 1.21698 1.03686 0.99951 0.91141 1.21252 0.79350 0.82048 0.88131 1.90703 1.42487 1.30054 1.87931 1.46011 1.53435 1.26078 1.10252 0.92456 0.92091 0.90373 0.94640 0.92484 0.91144 0.88072 0.92047 0.84702 0.86724 0.86614 0.88773 0.92073 0.86605 0.87927 0.85998 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.13 -3.73 6.24 30.59 0.19 -3.54 16 3 C 0.10 3.10 5.17 86.38 0.45 3.55 16 4 N -0.48 -21.29 2.10 -635.53 -1.34 -22.63 16 5 C -0.35 -19.63 9.63 84.04 0.81 -18.82 16 6 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 7 C 0.04 2.33 4.83 84.93 0.41 2.74 16 8 N -0.92 -58.79 13.96 21.66 0.30 -58.49 16 9 Si 0.96 49.06 25.01 68.60 1.72 50.78 16 10 H -0.28 -15.24 6.48 99.48 0.64 -14.59 16 11 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 12 H -0.25 -10.98 7.11 99.48 0.71 -10.28 16 13 C 0.44 18.75 5.55 87.66 0.49 19.24 16 14 O -0.59 -31.32 10.49 -3.09 -0.03 -31.35 16 15 C -0.14 -3.78 3.91 29.84 0.12 -3.66 16 16 C 0.15 3.92 2.65 45.10 0.12 4.04 16 17 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 18 C -0.12 -1.73 5.30 30.68 0.16 -1.57 16 19 C -0.12 -1.59 6.03 30.74 0.19 -1.40 16 20 C -0.13 -2.40 6.03 29.71 0.18 -2.22 16 21 C 0.50 16.42 7.71 87.72 0.68 17.10 16 22 O -0.63 -27.11 17.78 -3.04 -0.05 -27.17 16 23 N -0.71 -24.06 5.00 -446.66 -2.23 -26.29 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.59 7.21 -2.38 -0.02 1.57 16 29 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 30 H 0.10 2.30 6.47 -2.39 -0.02 2.29 16 31 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 32 H 0.14 2.58 7.40 -2.39 -0.02 2.57 16 33 H 0.11 2.59 7.15 -2.39 -0.02 2.57 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.03 8.11 -2.39 -0.02 1.01 16 36 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.39 16.52 6.84 -92.71 -0.63 15.88 16 Total: -1.00 -84.64 316.83 3.19 -81.46 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.33 Total: 20.12 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 4.50 Total: 13.57 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.27 Total: -107.41 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.09 Total: -58.52 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.72 Total: 50.78 kcal Total: -84.64 3.19 -81.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288193448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.700 kcal (2) G-P(sol) polarization free energy of solvation -84.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds